-
1
-
-
84860779000
-
The two-regime method for optimizing stochastic reaction-diffusion simulations
-
M. B. Flegg, S. J. Chapman, and R. Erban, "The two-regime method for optimizing stochastic reaction-diffusion simulations," J. R. Soc., Interface 9, 859-868 (2012).
-
(2012)
J. R. Soc., Interface
, vol.9
, pp. 859-868
-
-
Flegg, M.B.1
Chapman, S.J.2
Erban, R.3
-
2
-
-
0003880161
-
-
Garland Science, New York
-
B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts, and P.Walter, Molecular Biology of the Cell (Garland Science, New York, 2007).
-
(2007)
Molecular Biology of the Cell
-
-
Alberts, B.1
Johnson, A.2
Lewis, J.3
Raff, M.4
Roberts, K.5
Walter, P.6
-
5
-
-
0028913955
-
2+ evoked by inositol trisphosphate in xenopus oocytes
-
2+ evoked by inositol trisphosphate in xenopus oocytes," J. Physiol. 482, 533 (1995).
-
(1995)
J. Physiol.
, vol.482
, pp. 533
-
-
Yao, J.1
Choi, J.2
Parker, I.3
-
7
-
-
34249823358
-
Calcium dynamics: Spatio-temporal organization from the subcellular to the organ level
-
G. Dupont, L. Combettes, and L. Leybaert, "Calcium dynamics: Spatio-temporal organization from the subcellular to the organ level," Int. Rev. Cytol. 261, 193-245 (2007).
-
(2007)
Int. Rev. Cytol.
, vol.261
, pp. 193-245
-
-
Dupont, G.1
Combettes, L.2
Leybaert, L.3
-
9
-
-
60149106912
-
Calcium flickers steer cell migration
-
C. Wei, X. Wang, M. Chen, K. Ouyang, L.-S. Song, and H. Cheng, "Calcium flickers steer cell migration," Nature (London) 457, 901-905 (2008).
-
(2008)
Nature (London)
, vol.457
, pp. 901-905
-
-
Wei, C.1
Wang, X.2
Chen, M.3
Ouyang, K.4
Song, L.-S.5
Cheng, H.6
-
10
-
-
67349272867
-
2+ oscillations through the spatial signature drives gene expression
-
2+ oscillations through the spatial signature drives gene expression," Curr. Biol. 19, 853-858 (2009).
-
(2009)
Curr. Biol.
, vol.19
, pp. 853-858
-
-
Capite, J.D.1
Ng, S.2
Parekh, A.3
-
12
-
-
0033598765
-
From calcium blips to calcium puffs: Theoretical analysis of the requirements for interchannel communication
-
S. Swillens, G. Dupont, and P. Champeil, "From calcium blips to calcium puffs: Theoretical analysis of the requirements for interchannel communication," Proc. Natl. Acad. Sci. U.S.A. 96, 13750-13755 (1999).
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 13750-13755
-
-
Swillens, S.1
Dupont, G.2
Champeil, P.3
-
13
-
-
0037215762
-
2+ dynamics
-
2+ dynamics," Biophys. J. 84, 42-56 (2003).
-
(2003)
Biophys. J.
, vol.84
, pp. 42-56
-
-
Falcke, M.1
-
15
-
-
0037457952
-
Optimal ion channel clustering for intracellular calcium signaling
-
J. Shuai and P. Jung, "Optimal ion channel clustering for intracellular calcium signaling," Proc. Natl. Acad. Sci. U.S.A. 100, 506-510 (2003).
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 506-510
-
-
Shuai, J.1
Jung, P.2
-
16
-
-
46249103287
-
Calcium release site ultrastructure and the dynamics of puffs and sparks
-
H. DeRemigio, J. Groff, and G. Smith, "Calcium release site ultrastructure and the dynamics of puffs and sparks," Math. Med. Biol. 25, 65 (2008).
-
(2008)
Math. Med. Biol.
, vol.25
, pp. 65
-
-
DeRemigio, H.1
Groff, J.2
Smith, G.3
-
17
-
-
77954923613
-
Law of mass action, detailed balance, and the modeling of calcium puffs
-
S. Rüdiger, J. Shuai, and I. Sokolov, "Law of mass action, detailed balance, and the modeling of calcium puffs," Phys. Rev. Lett. 105, 048103 (2010).
-
(2010)
Phys. Rev. Lett.
, vol.105
, pp. 048103
-
-
Rüdiger, S.1
Shuai, J.2
Sokolov, I.3
-
18
-
-
0017664223
-
Physics of chemoreception
-
H. Berg and E. Purcell, "Physics of chemoreception," Biophys. J. 20, 193-219 (1977).
-
(1977)
Biophys. J.
, vol.20
, pp. 193-219
-
-
Berg, H.1
Purcell, E.2
-
20
-
-
0242490781
-
Fast evaluation of fluctuations in biochemical networks with the linear noise approximation
-
J. Elf and M. Ehrenberg, "Fast evaluation of fluctuations in biochemical networks with the linear noise approximation," Genome Res. 13, 2475-2484 (2003).
-
(2003)
Genome Res.
, vol.13
, pp. 2475-2484
-
-
Elf, J.1
Ehrenberg, M.2
-
21
-
-
0029658406
-
2+ liberation in xenopus oocytes: Hot spots, puffs, and blips
-
2+ liberation in xenopus oocytes: Hot spots, puffs, and blips," Cell Calcium 20, 105-121 (1996).
-
(1996)
Cell Calcium
, vol.20
, pp. 105-121
-
-
Parker, I.1
Choi, J.2
Yao, Y.3
-
22
-
-
84859887430
-
The probability of triggering calcium puffs is linearly related to the number of inositol trisphosphate receptors in a cluster
-
G. D. Dickinson, D. Swaminathan, and I. Parker, "The probability of triggering calcium puffs is linearly related to the number of inositol trisphosphate receptors in a cluster," Biophys. J. 102, 1826-1836 (2012).
-
(2012)
Biophys. J.
, vol.102
, pp. 1826-1836
-
-
Dickinson, G.D.1
Swaminathan, D.2
Parker, I.3
-
23
-
-
0001144902
-
Efficient exact stochastic simulation of chemical systems with many species and channels
-
M. Gibson and J. Bruck, "Efficient exact stochastic simulation of chemical systems with many species and channels," J. Phys. Chem. A 104, 1876-1889 (2000).
-
(2000)
J. Phys. Chem. A
, vol.104
, pp. 1876-1889
-
-
Gibson, M.1
Bruck, J.2
-
25
-
-
33748520215
-
Stochastic simulation of chemical reactions with spatial resolution and single molecular detail
-
S. S. Andrews and D. Bray, "Stochastic simulation of chemical reactions with spatial resolution and single molecular detail," Phys. Biol. 1, 137-151 (2004).
-
(2004)
Phys. Biol.
, vol.1
, pp. 137-151
-
-
Andrews, S.S.1
Bray, D.2
-
26
-
-
61849164660
-
Simulation of stochastic reaction-diffusion processes on unstructured meshes
-
(USA)
-
S. Engblom, L. Ferm, A. Hellander, and P. Lötstedt, "Simulation of stochastic reaction-diffusion processes on unstructured meshes," SIAM J. Sci. Comput. (USA) 31, 1774-1797 (2009).
-
(2009)
SIAM J. Sci. Comput.
, vol.31
, pp. 1774-1797
-
-
Engblom, S.1
Ferm, L.2
Hellander, A.3
Lötstedt, P.4
-
27
-
-
79960351109
-
Analysis of brownian dynamics simulations of reversible biomolecular reactions
-
J. Lipkova, K. C. Zygalakis, S. J. Chapman, and R. Erban, "Analysis of brownian dynamics simulations of reversible biomolecular reactions," SIAM J. Appl. Math. 71, 714-730 (2011).
-
(2011)
SIAM J. Appl. Math.
, vol.71
, pp. 714-730
-
-
Lipkova, J.1
Zygalakis, K.C.2
Chapman, S.J.3
Erban, R.4
-
28
-
-
70350729439
-
Stochastic modelling of reaction-diffusion processes: Algorithms for bimolecular reactions
-
R. Erban and S. J. Chapman, "Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions," Phys. Biol. 6, 046001 (2009).
-
(2009)
Phys. Biol.
, vol.6
, pp. 046001
-
-
Erban, R.1
Chapman, S.J.2
-
29
-
-
34147128541
-
Reactive boundary conditions for stochastic simulations of reaction-diffusion processes
-
R. Erban and S. J. Chapman, "Reactive boundary conditions for stochastic simulations of reaction-diffusion processes," Phys. Biol. 4, 16-28 (2007).
-
(2007)
Phys. Biol.
, vol.4
, pp. 16-28
-
-
Erban, R.1
Chapman, S.J.2
-
31
-
-
84873020690
-
Receptor clustering affects signal transduction at the membrane level in the reaction-limited regime
-
B. R. Caré and H. A. Soula, "Receptor clustering affects signal transduction at the membrane level in the reaction-limited regime," Phys. Rev. E 87, 012720 (2013).
-
(2013)
Phys. Rev. E
, vol.87
, pp. 012720
-
-
Caré, B.R.1
Soula, H.A.2
-
34
-
-
0035183189
-
Asymptotic analysis of buffered calcium diffusion near a point source
-
A. Sherman, G. D. Smith, L. Dai, and R. M. Miura, "Asymptotic analysis of buffered calcium diffusion near a point source," SIAM J. Appl. Math. 61, 1816-1838 (2001).
-
(2001)
SIAM J. Appl. Math.
, vol.61
, pp. 1816-1838
-
-
Sherman, A.1
Smith, G.D.2
Dai, L.3
Miura, R.M.4
-
35
-
-
44849133527
-
2+ Ions in the Dyadic Cleft; Continuous versus Random Walk Description of Diffusion
-
2+ Ions in the Dyadic Cleft; Continuous versus Random Walk Description of Diffusion," Biophys. J. 94, 4184 (2008).
-
(2008)
Biophys. J.
, vol.94
, pp. 4184
-
-
Hake, J.1
Lines, G.2
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