메뉴 건너뛰기




Volumn 5, Issue 5, 2013, Pages 1010-1020

Evolutionary dynamics of retrotransposons assessed by high-throughput sequencing in wild relatives of wheat

Author keywords

454 Pyrosequencing; Aegilops; Molecular population genetics; Repetitive fraction composition; Transposable elements; Whole genome snapshot

Indexed keywords

454 PYROSEQUENCING; AEGILOPS; ARTICLE; GENETICS; HIGH THROUGHPUT SEQUENCING; LONG TERMINAL REPEAT; MOLECULAR EVOLUTION; MOLECULAR POPULATION GENETICS; PLANT GENOME; POACEAE; REPETITIVE FRACTION COMPOSITION; RETROPOSON; TRANSPOSABLE ELEMENTS; WHEAT; WHOLE-GENOME SNAPSHOT;

EID: 84881609643     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evt064     Document Type: Article
Times cited : (26)

References (69)
  • 1
    • 3042523445 scopus 로고    scopus 로고
    • Genome differentiation in Aegilops. 4. Evolution of the U-genome cluster
    • Badaeva ED, et al. 2004. Genome differentiation in Aegilops. 4. Evolution of the U-genome cluster. Plant Syst Evol. 246:45-76.
    • (2004) Plant Syst Evol. , vol.246 , pp. 45-76
    • Badaeva, E.D.1
  • 2
    • 73649140264 scopus 로고    scopus 로고
    • Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome
    • Baucom RS, et al. 2009. Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome. PLoS Genet. 5:e1000732.
    • (2009) PLoS Genet. , vol.5
    • Baucom, R.S.1
  • 3
    • 84863265162 scopus 로고    scopus 로고
    • Phylogenetic relationships among the polyploid and diploid Aegilops species inferred from the nuclear 5S rDNA sequences (Poaceae: Triticeae)
    • Baum BR, et al. 2012. Phylogenetic relationships among the polyploid and diploid Aegilops species inferred from the nuclear 5S rDNA sequences (Poaceae: Triticeae). Genome 55:177-193.
    • (2012) Genome , vol.55 , pp. 177-193
    • Baum, B.R.1
  • 4
    • 77956369865 scopus 로고    scopus 로고
    • Transposable elements in a marginal plant population: Temporal fluctuations provide new insights into genome evolution of wild diploid wheat
    • Belyayev A, et al. 2010. Transposable elements in a marginal plant population: temporal fluctuations provide new insights into genome evolution of wild diploid wheat. Mob DNA. 1:6.
    • (2010) Mob DNA. , vol.1 , pp. 6
    • Belyayev, A.1
  • 5
    • 27444444339 scopus 로고    scopus 로고
    • Transposable elements, gene creation and genome rearrangement in flowering plants
    • Bennetzen JL. 2005. Transposable elements, gene creation and genome rearrangement in flowering plants. Curr Opin Genet Dev. 15:621-627.
    • (2005) Curr Opin Genet Dev. , vol.15 , pp. 621-627
    • Bennetzen, J.L.1
  • 6
    • 0000637348 scopus 로고    scopus 로고
    • Do plants have a one-way ticket to genomic obesity?
    • Bennetzen JL, Kellogg EA. 1997. Do plants have a one-way ticket to genomic obesity? Plant Cell 9:1509-1514.
    • (1997) Plant Cell , vol.9 , pp. 1509-1514
    • Bennetzen, J.L.1    Kellogg, E.A.2
  • 7
    • 84858592204 scopus 로고    scopus 로고
    • Next-generation sequencing applications for wheat crop improvement
    • Berkman P, Lai K, Lorenc M, Edwards D. 2012. Next-generation sequencing applications for wheat crop improvement. Am J Bot. 99:365-371.
    • (2012) Am J Bot. , vol.99 , pp. 365-371
    • Berkman, P.1    Lai, K.2    Lorenc, M.3    Edwards, D.4
  • 8
    • 33749522239 scopus 로고    scopus 로고
    • Junk DNA as an evolutionary force
    • Biemont C, Vieira C. 2006. Junk DNA as an evolutionary force. Nature 443:521-524.
    • (2006) Nature , vol.443 , pp. 521-524
    • Biemont, C.1    Vieira, C.2
  • 9
    • 33846936303 scopus 로고    scopus 로고
    • Comparison of orthologous loci from small grass genomes Brachypodium and rice: Implications for wheat genomics and grass genome annotation
    • Bossolini E, Wicker T, Knobel P, Keller B. 2007. Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation. Plant J. 49:704-717.
    • (2007) Plant J. , vol.49 , pp. 704-717
    • Bossolini, E.1    Wicker, T.2    Knobel, P.3    Keller, B.4
  • 10
    • 84870260198 scopus 로고    scopus 로고
    • Analysis of the bread wheat genome using whole-genome shotgun sequencing
    • Brenchley R, et al. 2012. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature 491:705-710.
    • (2012) Nature , vol.491 , pp. 705-710
    • Brenchley, R.1
  • 11
    • 13144255696 scopus 로고    scopus 로고
    • The ecology of the genome - Mobile DNA elements and their hosts
    • Brookfield J F Y. 2005a. The ecology of the genome - Mobile DNA elements and their hosts. Nat Rev Genet. 6:128-136.
    • (2005) Nat Rev Genet. , vol.6 , pp. 128-136
    • Brookfield, J.F.Y.1
  • 12
    • 23844528470 scopus 로고    scopus 로고
    • Evolutionary forces generating sequence homogeneity and heterogeneity within retrotransposon families
    • Brookfield J F Y. 2005b. Evolutionary forces generating sequence homogeneity and heterogeneity within retrotransposon families. Cytogenet Genome Res. 110:383-391.
    • (2005) Cytogenet Genome Res. , vol.110 , pp. 383-391
    • Brookfield, J.F.Y.1
  • 13
    • 33646862254 scopus 로고    scopus 로고
    • The evolution of mobile DNAs: When will transposons create phylogenies that look as if there is a master gene?
    • Brookfield J F Y, Johnson L. 2006. The evolution of mobile DNAs: when will transposons create phylogenies that look as if there is a master gene? Genetics 173:1115-1123.
    • (2006) Genetics , vol.173 , pp. 1115-1123
    • Brookfield, J.F.Y.1    Johnson, L.2
  • 14
    • 0031438820 scopus 로고    scopus 로고
    • Quasispecies in retrotransposons: A role for sequence variability in Tnt1 evolution
    • Casacuberta JM, Vernhettes S, Audeon C, Grandbastien MA. 1997. Quasispecies in retrotransposons: a role for sequence variability in Tnt1 evolution. Genetica 100:109-117.
    • (1997) Genetica , vol.100 , pp. 109-117
    • Casacuberta, J.M.1    Vernhettes, S.2    Audeon, C.3    Grandbastien, M.A.4
  • 15
    • 1542637559 scopus 로고    scopus 로고
    • SiZer for exploration of structures in curves
    • Chaudhui P, Marron J. 1999. SiZer for exploration of structures in curves. J Am Stat Assoc. 94:807-823.
    • (1999) J Am Stat Assoc. , vol.94 , pp. 807-823
    • Chaudhui, P.1    Marron, J.2
  • 16
    • 0141495095 scopus 로고    scopus 로고
    • A rapid DNAminipreparation method suitable for AFLP and other PCR amplifications
    • Chen DH, Ronald PC. 1999. A rapid DNAminipreparation method suitable for AFLP and other PCR amplifications. Plant Mol Biol Rep. 17:53-57.
    • (1999) Plant Mol Biol Rep. , vol.17 , pp. 53-57
    • Chen, D.H.1    Ronald, P.C.2
  • 17
    • 77955908237 scopus 로고    scopus 로고
    • Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces
    • Choulet F, et al. 2010. Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell 22:1686-1701.
    • (2010) Plant Cell , vol.22 , pp. 1686-1701
    • Choulet, F.1
  • 18
    • 44849114374 scopus 로고    scopus 로고
    • Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the assissted automated assembler of repeat families (AAARF) algorithm
    • De Barry JD, Liu R, Bennetzen JL. 2008. Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the assissted automated assembler of repeat families (AAARF) algorithm. BMC Bioinformatics 9:235.
    • (2008) BMC Bioinformatics , vol.9 , pp. 235
    • De Barry, J.D.1    Liu, R.2    Bennetzen, J.L.3
  • 19
    • 77949918995 scopus 로고    scopus 로고
    • Triticeae genome structure and evolution
    • Muehlbauer GJ, Feuillet C, editors, New York: Springer-Verlag
    • Dvorak J. 2009. Triticeae genome structure and evolution. In: Muehlbauer GJ, Feuillet C, editors. Genetics and genomics of the Triticeae. New York: Springer-Verlag. p. 685-712.
    • (2009) Genetics and Genomics of the Triticeae , pp. 685-712
    • Dvorak, J.1
  • 20
    • 49249116833 scopus 로고    scopus 로고
    • Nuclear DNA amount and genome downsizing in natural and synthetic allopolyploids of the genera Aegilops and Triticum
    • Eilam T, Anikster Y, Millet E, Manisterski J, Feldman M. 2008. Nuclear DNA amount and genome downsizing in natural and synthetic allopolyploids of the genera Aegilops and Triticum. Genome 51:616-627.
    • (2008) Genome , vol.51 , pp. 616-627
    • Eilam, T.1    Anikster, Y.2    Millet, E.3    Manisterski, J.4    Feldman, M.5
  • 21
    • 84872537101 scopus 로고    scopus 로고
    • The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution
    • Estep MC, De Barry JD, Bennetzen JL. 2013. The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution. Heredity 110:194-204.
    • (2013) Heredity , vol.110 , pp. 194-204
    • Estep, M.C.1    De Barry, J.D.2    Bennetzen, J.L.3
  • 22
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin (version 3.0): An integrated software package for population genetics data analysis
    • Excoffier L, Laval G, Schneider S. 2005. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform. 1:47-50.
    • (2005) Evol Bioinform. , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 23
    • 84868534630 scopus 로고    scopus 로고
    • Transposable elements, epigenetics, and genome evolution
    • Fedoroff NV. 2012. Transposable elements, epigenetics, and genome evolution. Science 338:758-767.
    • (2012) Science , vol.338 , pp. 758-767
    • Fedoroff, N.V.1
  • 24
    • 84869028379 scopus 로고    scopus 로고
    • Genome evolution due to allopolyploidization in wheat
    • Feldman M, Levy AA. 2012. Genome evolution due to allopolyploidization in wheat. Genetics 192:763-774.
    • (2012) Genetics , vol.192 , pp. 763-774
    • Feldman, M.1    Levy, A.A.2
  • 25
    • 0036250001 scopus 로고    scopus 로고
    • Plant transposable elements: Where genetics meets genomics
    • Feschotte C, Jiang N, Wessler SR. 2002. Plant transposable elements: where genetics meets genomics. Nat Rev Genet. 3:329-341.
    • (2002) Nat Rev Genet. , vol.3 , pp. 329-341
    • Feschotte, C.1    Jiang, N.2    Wessler, S.R.3
  • 26
    • 42549094998 scopus 로고    scopus 로고
    • Selection on major components of angiosperm genomes
    • Gaut B, Ross Ibarra J. 2008. Selection on major components of angiosperm genomes. Science 320:484-486.
    • (2008) Science , vol.320 , pp. 484-486
    • Gaut, B.1    Ross Ibarra, J.2
  • 27
    • 70350294348 scopus 로고    scopus 로고
    • Systematic artifacts in metagenomes from complex microbial communities
    • Gomez-Alvarez V, Teal TK, Schmidt TM. 2009. Systematic artifacts in metagenomes from complex microbial communities. ISME J. 3:1314-1317.
    • (2009) ISME J. , vol.3 , pp. 1314-1317
    • Gomez-Alvarez, V.1    Teal, T.K.2    Schmidt, T.M.3
  • 28
    • 67349176068 scopus 로고    scopus 로고
    • Genetics in geographically structured populations: Defining, estimating and interpreting F (ST)
    • Holsinger K, Weir B. 2009. Genetics in geographically structured populations: defining, estimating and interpreting F (ST). Nat Rev Genet. 10:639-650.
    • (2009) Nat Rev Genet. , vol.10 , pp. 639-650
    • Holsinger, K.1    Weir, B.2
  • 30
    • 0037062465 scopus 로고    scopus 로고
    • Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat
    • Huang S, Sirikhachornkit A, Su XJ, Faris J, Gill B. 2002. Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat. Proc Natl Acad Sci U S A. 99:8133-8138.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 8133-8138
    • Huang, S.1    Sirikhachornkit, A.2    Su, X.J.3    Faris, J.4    Gill, B.5
  • 31
    • 80052854314 scopus 로고    scopus 로고
    • Families of transposable elements, population structure and the origin of species
    • Jurka J, Bao W, Kojima K. 2011. Families of transposable elements, population structure and the origin of species. Biol Direct. 6:44.
    • (2011) Biol Direct. , vol.6 , pp. 44
    • Jurka, J.1    Bao, W.2    Kojima, K.3
  • 32
    • 0034612315 scopus 로고    scopus 로고
    • Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence
    • Kalendar R, Tanskanen J, Immonen S, Nevo E, Schulman AH. 2000. Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence. Proc Natl Acad Sci U S A. 97:6603-6607.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6603-6607
    • Kalendar, R.1    Tanskanen, J.2    Immonen, S.3    Nevo, E.4    Schulman, A.H.5
  • 33
    • 1542513556 scopus 로고    scopus 로고
    • Mobile elements: Drivers of genome evolution
    • Kazazian HH. 2004. Mobile elements: drivers of genome evolution. Science 303:1626-1632.
    • (2004) Science , vol.303 , pp. 1626-1632
    • Kazazian, H.H.1
  • 34
    • 69749117757 scopus 로고    scopus 로고
    • Contrasting evolutionary dynamics between angiosperm and mammalian genomes
    • Kejnovsky E, Leitch IJ, Leitch AR. 2009. Contrasting evolutionary dynamics between angiosperm and mammalian genomes. Trends Ecol Evol. 24:572-582.
    • (2009) Trends Ecol Evol. , vol.24 , pp. 572-582
    • Kejnovsky, E.1    Leitch, I.J.2    Leitch, A.R.3
  • 36
    • 33846902534 scopus 로고    scopus 로고
    • Genome ecosystem and transposable elements species
    • Le Rouzic A, Dupas S, Capy P. 2007. Genome ecosystem and transposable elements species. Gene 390:214-220.
    • (2007) Gene , vol.390 , pp. 214-220
    • Le Rouzic, A.1    Dupas, S.2    Capy, P.3
  • 37
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 38
    • 0033150470 scopus 로고    scopus 로고
    • Molecular cytogenetic analysis of Aegilops cylindrica host
    • Linc G, Friebe B, Kynast RG. 1999. Molecular cytogenetic analysis of Aegilops cylindrica host. Genome 42:497-503.
    • (1999) Genome , vol.42 , pp. 497-503
    • Linc, G.1    Friebe, B.2    Kynast, R.G.3
  • 39
    • 8444242268 scopus 로고    scopus 로고
    • Sequence composition, organization, and evolution of the core Triticeae genome
    • Li WL, Zhang P, Fellers JP, Friebe B, Gill BS. 2004. Sequence composition, organization, and evolution of the core Triticeae genome. Plant J. 40:500-511.
    • (2004) Plant J. , vol.40 , pp. 500-511
    • Li, W.L.1    Zhang, P.2    Fellers, J.P.3    Friebe, B.4    Gill, B.S.5
  • 40
    • 38349101340 scopus 로고    scopus 로고
    • Repetitive DNA in the pea (Pisum sativum L.) genome: Comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula
    • Macas G, Pavel N, Navratilova A. 2007. Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula. BMC Genomics 8:427.
    • (2007) BMC Genomics , vol.8 , pp. 427
    • Macas, G.1    Pavel, N.2    Navratilova, A.3
  • 41
    • 84872488175 scopus 로고    scopus 로고
    • Comparative analysis of genome composition in Triticeae reveals strong variation in transposable element dynamics and nucleotide diversity
    • Forthcoming
    • Middleton C, Stein N, Keller B, Kilian B, Wicker T. Forthcoming 2012. Comparative analysis of genome composition in Triticeae reveals strong variation in transposable element dynamics and nucleotide diversity. Plant J. 73:347-356.
    • (2012) Plant J. , vol.73 , pp. 347-356
    • Middleton, C.1    Stein, N.2    Keller, B.3    Kilian, B.4    Wicker, T.5
  • 42
    • 77954854627 scopus 로고    scopus 로고
    • Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
    • Novák P, Neumann P, Macas J. 2010. Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data. BMC Bioinformatics 11:378.
    • (2010) BMC Bioinformatics , vol.11 , pp. 378
    • Novák, P.1    Neumann, P.2    Macas, J.3
  • 43
    • 70449341719 scopus 로고    scopus 로고
    • Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina
    • Parisod C, et al. 2009. Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina. New Phytol. 184:1003-1015.
    • (2009) New Phytol. , vol.184 , pp. 1003-1015
    • Parisod, C.1
  • 44
    • 84869832038 scopus 로고    scopus 로고
    • Differential dynamics of transposable elements during long-term diploidization of Nicotiana section Repandae (Solanaceae) allopolyploid genomes
    • Parisod C, et al. 2012. Differential dynamics of transposable elements during long-term diploidization of Nicotiana section Repandae (Solanaceae) allopolyploid genomes. PLoS One 7:e50352.
    • (2012) PLoS One , vol.7
    • Parisod, C.1
  • 45
    • 84875438593 scopus 로고    scopus 로고
    • Responses of transposable elements to polyploidy
    • Grandbastien MA, Casacuberta JM, editors, Berlin: Springer-Verlag
    • Parisod C, Senerchia N. 2012. Responses of transposable elements to polyploidy. In: Grandbastien MA, Casacuberta JM, editors. Plant transposable elements. Topics in current genetics. Vol. 24. Berlin: Springer-Verlag. p. 147-168.
    • (2012) Plant Transposable Elements. Topics in Current genetics. , vol.24 , pp. 147-168
    • Parisod, C.1    Senerchia, N.2
  • 46
    • 27144543515 scopus 로고    scopus 로고
    • Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations
    • Sabot F, et al. 2005. Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations. Mol Genet Genomics. 274:119-130.
    • (2005) Mol Genet Genomics. , vol.274 , pp. 119-130
    • Sabot, F.1
  • 47
    • 33845190150 scopus 로고    scopus 로고
    • Parasitism and the retrotransposon life cycle in plants: A hitchhiker's guide to the genome
    • Sabot F, Schulman AH. 2006. Parasitism and the retrotransposon life cycle in plants: a hitchhiker's guide to the genome. Heredity 97:381-388.
    • (2006) Heredity , vol.97 , pp. 381-388
    • Sabot, F.1    Schulman, A.H.2
  • 48
    • 80052273129 scopus 로고    scopus 로고
    • Genomics of transposable elements in the Triticeae
    • Muehlbauer GJ, Feuillet C, editors, New York: Springer-Verlag
    • Sabot F, Schulman AH. 2009. Genomics of transposable elements in the Triticeae. In: Muehlbauer GJ, Feuillet C, editors. Genetics and genomics of the Triticeae. New York: Springer-Verlag. p. 387-405.
    • (2009) Genetics and Genomics of the Triticeae , pp. 387-405
    • Sabot, F.1    Schulman, A.H.2
  • 49
    • 0013630297 scopus 로고    scopus 로고
    • Nested retrotransposons in the intergenic regions of the maize genome
    • San Miguel P, et al. 1996. Nested retrotransposons in the intergenic regions of the maize genome. Science 274:765-768.
    • (1996) Science , vol.274 , pp. 765-768
    • San Miguel, P.1
  • 51
    • 79952422304 scopus 로고    scopus 로고
    • Quality control and preprocessing of metagenomic datasets
    • Schmieder R, Edwards R. 2011. Quality control and preprocessing of metagenomic datasets. Bioinformatics 27:863-864.
    • (2011) Bioinformatics , vol.27 , pp. 863-864
    • Schmieder, R.1    Edwards, R.2
  • 52
    • 70450202132 scopus 로고    scopus 로고
    • The B73 maize genome: Complexity, diversity, and dynamics
    • Schnable PS, et al. 2009. The B73 maize genome: complexity, diversity, and dynamics. Science 326:1112-1115.
    • (2009) Science , vol.326 , pp. 1112-1115
    • Schnable, P.S.1
  • 53
    • 0032814604 scopus 로고    scopus 로고
    • Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates very among sites: Application to human mitochondrial DNA
    • Schneider S, Excoffier L. 1999. Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates very among sites: application to human mitochondrial DNA. Genetics 152:1079-1089.
    • (1999) Genetics , vol.152 , pp. 1079-1089
    • Schneider, S.1    Excoffier, L.2
  • 54
    • 33947303168 scopus 로고    scopus 로고
    • Transposable elements and the epigenetic regulation of the genome
    • Slotkin RK, Martienssen R. 2007. Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet. 8:272-285.
    • (2007) Nat Rev Genet. , vol.8 , pp. 272-285
    • Slotkin, R.K.1    Martienssen, R.2
  • 55
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 56
    • 84865806641 scopus 로고    scopus 로고
    • LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders
    • Sun G, et al. 2012. LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders. Genome Biol Evol. 4:168-183.
    • (2012) Genome Biol Evol. , vol.4 , pp. 168-183
    • Sun, G.1
  • 57
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, et al. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731-2739.
    • (2011) Mol Biol Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1
  • 58
    • 77955273950 scopus 로고    scopus 로고
    • A triptych of the evolution of plant transposable elements
    • Tenaillon M, Hollister J, Gaut B. 2010. A triptych of the evolution of plant transposable elements. Trends Plant Sci. 15:471-478.
    • (2010) Trends Plant Sci. , vol.15 , pp. 471-478
    • Tenaillon, M.1    Hollister, J.2    Gaut, B.3
  • 59
    • 79960095966 scopus 로고    scopus 로고
    • Genome size and transposable element content as determined by highthroughput sequencing in maize and Zea luxurians
    • Tenaillon MI, Hufford MB, Gaut BS, Ross-Ibarra J. 2011. Genome size and transposable element content as determined by highthroughput sequencing in maize and Zea luxurians. Gen Biol Evol. 3:219-229.
    • (2011) Gen Biol Evol. , vol.3 , pp. 219-229
    • Tenaillon, M.I.1    Hufford, M.B.2    Gaut, B.S.3    Ross-Ibarra, J.4
  • 60
    • 83855165105 scopus 로고    scopus 로고
    • Repetitive DNA and next-generation sequencing: Computational challenges and solutions
    • Treangen TJ, Salzberg SL. 2012. Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nat Rev Genet. 13:36-46.
    • (2012) Nat Rev Genet. , vol.13 , pp. 36-46
    • Treangen, T.J.1    Salzberg, S.L.2
  • 62
    • 0032718558 scopus 로고    scopus 로고
    • Retrotransposon BARE-1 and its role in genome evolution in the genus Hordeum
    • Vicient CM, et al. 1999. Retrotransposon BARE-1 and its role in genome evolution in the genus Hordeum. Plant Cell 11:1769-1784.
    • (1999) Plant Cell , vol.11 , pp. 1769-1784
    • Vicient, C.M.1
  • 64
    • 23844543047 scopus 로고    scopus 로고
    • LTR retrotransposons and flowering plant genome size: Emergence of the increase/decrease model
    • Vitte C, Panaud O. 2005. LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model. Cytogenet Genome Res. 110:91-107.
    • (2005) Cytogenet Genome Res. , vol.110 , pp. 91-107
    • Vitte, C.1    Panaud, O.2
  • 65
    • 84892662490 scopus 로고    scopus 로고
    • Gene and repetitive sequence annotation in the Triticeae
    • Muehlbauer GJ, Feuillet C, editors, New York: Springer-Verlag
    • Wicker T, Buell CR. 2009. Gene and repetitive sequence annotation in the Triticeae. In: Muehlbauer GJ, Feuillet C, editors. Genetics and genomics of the Triticeae. New York: Springer-Verlag. p. 407-425.
    • (2009) Genetics and Genomics of the Triticeae , pp. 407-425
    • Wicker, T.1    Buell, C.R.2
  • 66
    • 36249023071 scopus 로고    scopus 로고
    • A unified classification system for eukaryotic transposable elements
    • Wicker T, et al. 2007. A unified classification system for eukaryotic transposable elements. Nat Rev Genet. 8:973-982.
    • (2007) Nat Rev Genet. , vol.8 , pp. 973-982
    • Wicker, T.1
  • 67
    • 69249142634 scopus 로고    scopus 로고
    • A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley
    • Wicker T, et al. 2009. A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley. Plant J. 59:712-722.
    • (2009) Plant J. , vol.59 , pp. 712-722
    • Wicker, T.1
  • 68
    • 0024712231 scopus 로고
    • Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data
    • Wolfe KH, Gouy ML, Yang YW, Sharp PM, Li WH. 1989. Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc Natl Acad Sci U S A. 86:6201-6205.
    • (1989) Proc Natl Acad Sci U S A , vol.86 , pp. 6201-6205
    • Wolfe, K.H.1    Gouy, M.L.2    Yang, Y.W.3    Sharp, P.M.4    Li, W.H.5
  • 69
    • 84876799103 scopus 로고    scopus 로고
    • Mobile element biology: New possibilities with high-throughput sequencing
    • pii:S0168-95251200206-5
    • Xing J, Witherspoon DJ, Jorde LB. 2013. Mobile element biology: new possibilities with high-throughput sequencing. Trends Genet. pii:S0168-9525 (12) 00206-5.
    • (2013) Trends Genet.
    • Xing, J.1    Witherspoon, D.J.2    Jorde, L.B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.