-
1
-
-
3042523445
-
Genome differentiation in Aegilops. 4. Evolution of the U-genome cluster
-
Badaeva ED, et al. 2004. Genome differentiation in Aegilops. 4. Evolution of the U-genome cluster. Plant Syst Evol. 246:45-76.
-
(2004)
Plant Syst Evol.
, vol.246
, pp. 45-76
-
-
Badaeva, E.D.1
-
2
-
-
73649140264
-
Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome
-
Baucom RS, et al. 2009. Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome. PLoS Genet. 5:e1000732.
-
(2009)
PLoS Genet.
, vol.5
-
-
Baucom, R.S.1
-
3
-
-
84863265162
-
Phylogenetic relationships among the polyploid and diploid Aegilops species inferred from the nuclear 5S rDNA sequences (Poaceae: Triticeae)
-
Baum BR, et al. 2012. Phylogenetic relationships among the polyploid and diploid Aegilops species inferred from the nuclear 5S rDNA sequences (Poaceae: Triticeae). Genome 55:177-193.
-
(2012)
Genome
, vol.55
, pp. 177-193
-
-
Baum, B.R.1
-
4
-
-
77956369865
-
Transposable elements in a marginal plant population: Temporal fluctuations provide new insights into genome evolution of wild diploid wheat
-
Belyayev A, et al. 2010. Transposable elements in a marginal plant population: temporal fluctuations provide new insights into genome evolution of wild diploid wheat. Mob DNA. 1:6.
-
(2010)
Mob DNA.
, vol.1
, pp. 6
-
-
Belyayev, A.1
-
5
-
-
27444444339
-
Transposable elements, gene creation and genome rearrangement in flowering plants
-
Bennetzen JL. 2005. Transposable elements, gene creation and genome rearrangement in flowering plants. Curr Opin Genet Dev. 15:621-627.
-
(2005)
Curr Opin Genet Dev.
, vol.15
, pp. 621-627
-
-
Bennetzen, J.L.1
-
6
-
-
0000637348
-
Do plants have a one-way ticket to genomic obesity?
-
Bennetzen JL, Kellogg EA. 1997. Do plants have a one-way ticket to genomic obesity? Plant Cell 9:1509-1514.
-
(1997)
Plant Cell
, vol.9
, pp. 1509-1514
-
-
Bennetzen, J.L.1
Kellogg, E.A.2
-
7
-
-
84858592204
-
Next-generation sequencing applications for wheat crop improvement
-
Berkman P, Lai K, Lorenc M, Edwards D. 2012. Next-generation sequencing applications for wheat crop improvement. Am J Bot. 99:365-371.
-
(2012)
Am J Bot.
, vol.99
, pp. 365-371
-
-
Berkman, P.1
Lai, K.2
Lorenc, M.3
Edwards, D.4
-
8
-
-
33749522239
-
Junk DNA as an evolutionary force
-
Biemont C, Vieira C. 2006. Junk DNA as an evolutionary force. Nature 443:521-524.
-
(2006)
Nature
, vol.443
, pp. 521-524
-
-
Biemont, C.1
Vieira, C.2
-
9
-
-
33846936303
-
Comparison of orthologous loci from small grass genomes Brachypodium and rice: Implications for wheat genomics and grass genome annotation
-
Bossolini E, Wicker T, Knobel P, Keller B. 2007. Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation. Plant J. 49:704-717.
-
(2007)
Plant J.
, vol.49
, pp. 704-717
-
-
Bossolini, E.1
Wicker, T.2
Knobel, P.3
Keller, B.4
-
10
-
-
84870260198
-
Analysis of the bread wheat genome using whole-genome shotgun sequencing
-
Brenchley R, et al. 2012. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature 491:705-710.
-
(2012)
Nature
, vol.491
, pp. 705-710
-
-
Brenchley, R.1
-
11
-
-
13144255696
-
The ecology of the genome - Mobile DNA elements and their hosts
-
Brookfield J F Y. 2005a. The ecology of the genome - Mobile DNA elements and their hosts. Nat Rev Genet. 6:128-136.
-
(2005)
Nat Rev Genet.
, vol.6
, pp. 128-136
-
-
Brookfield, J.F.Y.1
-
12
-
-
23844528470
-
Evolutionary forces generating sequence homogeneity and heterogeneity within retrotransposon families
-
Brookfield J F Y. 2005b. Evolutionary forces generating sequence homogeneity and heterogeneity within retrotransposon families. Cytogenet Genome Res. 110:383-391.
-
(2005)
Cytogenet Genome Res.
, vol.110
, pp. 383-391
-
-
Brookfield, J.F.Y.1
-
13
-
-
33646862254
-
The evolution of mobile DNAs: When will transposons create phylogenies that look as if there is a master gene?
-
Brookfield J F Y, Johnson L. 2006. The evolution of mobile DNAs: when will transposons create phylogenies that look as if there is a master gene? Genetics 173:1115-1123.
-
(2006)
Genetics
, vol.173
, pp. 1115-1123
-
-
Brookfield, J.F.Y.1
Johnson, L.2
-
14
-
-
0031438820
-
Quasispecies in retrotransposons: A role for sequence variability in Tnt1 evolution
-
Casacuberta JM, Vernhettes S, Audeon C, Grandbastien MA. 1997. Quasispecies in retrotransposons: a role for sequence variability in Tnt1 evolution. Genetica 100:109-117.
-
(1997)
Genetica
, vol.100
, pp. 109-117
-
-
Casacuberta, J.M.1
Vernhettes, S.2
Audeon, C.3
Grandbastien, M.A.4
-
15
-
-
1542637559
-
SiZer for exploration of structures in curves
-
Chaudhui P, Marron J. 1999. SiZer for exploration of structures in curves. J Am Stat Assoc. 94:807-823.
-
(1999)
J Am Stat Assoc.
, vol.94
, pp. 807-823
-
-
Chaudhui, P.1
Marron, J.2
-
16
-
-
0141495095
-
A rapid DNAminipreparation method suitable for AFLP and other PCR amplifications
-
Chen DH, Ronald PC. 1999. A rapid DNAminipreparation method suitable for AFLP and other PCR amplifications. Plant Mol Biol Rep. 17:53-57.
-
(1999)
Plant Mol Biol Rep.
, vol.17
, pp. 53-57
-
-
Chen, D.H.1
Ronald, P.C.2
-
17
-
-
77955908237
-
Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces
-
Choulet F, et al. 2010. Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell 22:1686-1701.
-
(2010)
Plant Cell
, vol.22
, pp. 1686-1701
-
-
Choulet, F.1
-
18
-
-
44849114374
-
Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the assissted automated assembler of repeat families (AAARF) algorithm
-
De Barry JD, Liu R, Bennetzen JL. 2008. Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the assissted automated assembler of repeat families (AAARF) algorithm. BMC Bioinformatics 9:235.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 235
-
-
De Barry, J.D.1
Liu, R.2
Bennetzen, J.L.3
-
19
-
-
77949918995
-
Triticeae genome structure and evolution
-
Muehlbauer GJ, Feuillet C, editors, New York: Springer-Verlag
-
Dvorak J. 2009. Triticeae genome structure and evolution. In: Muehlbauer GJ, Feuillet C, editors. Genetics and genomics of the Triticeae. New York: Springer-Verlag. p. 685-712.
-
(2009)
Genetics and Genomics of the Triticeae
, pp. 685-712
-
-
Dvorak, J.1
-
20
-
-
49249116833
-
Nuclear DNA amount and genome downsizing in natural and synthetic allopolyploids of the genera Aegilops and Triticum
-
Eilam T, Anikster Y, Millet E, Manisterski J, Feldman M. 2008. Nuclear DNA amount and genome downsizing in natural and synthetic allopolyploids of the genera Aegilops and Triticum. Genome 51:616-627.
-
(2008)
Genome
, vol.51
, pp. 616-627
-
-
Eilam, T.1
Anikster, Y.2
Millet, E.3
Manisterski, J.4
Feldman, M.5
-
21
-
-
84872537101
-
The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution
-
Estep MC, De Barry JD, Bennetzen JL. 2013. The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution. Heredity 110:194-204.
-
(2013)
Heredity
, vol.110
, pp. 194-204
-
-
Estep, M.C.1
De Barry, J.D.2
Bennetzen, J.L.3
-
22
-
-
85007110786
-
Arlequin (version 3.0): An integrated software package for population genetics data analysis
-
Excoffier L, Laval G, Schneider S. 2005. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform. 1:47-50.
-
(2005)
Evol Bioinform.
, vol.1
, pp. 47-50
-
-
Excoffier, L.1
Laval, G.2
Schneider, S.3
-
23
-
-
84868534630
-
Transposable elements, epigenetics, and genome evolution
-
Fedoroff NV. 2012. Transposable elements, epigenetics, and genome evolution. Science 338:758-767.
-
(2012)
Science
, vol.338
, pp. 758-767
-
-
Fedoroff, N.V.1
-
24
-
-
84869028379
-
Genome evolution due to allopolyploidization in wheat
-
Feldman M, Levy AA. 2012. Genome evolution due to allopolyploidization in wheat. Genetics 192:763-774.
-
(2012)
Genetics
, vol.192
, pp. 763-774
-
-
Feldman, M.1
Levy, A.A.2
-
25
-
-
0036250001
-
Plant transposable elements: Where genetics meets genomics
-
Feschotte C, Jiang N, Wessler SR. 2002. Plant transposable elements: where genetics meets genomics. Nat Rev Genet. 3:329-341.
-
(2002)
Nat Rev Genet.
, vol.3
, pp. 329-341
-
-
Feschotte, C.1
Jiang, N.2
Wessler, S.R.3
-
26
-
-
42549094998
-
Selection on major components of angiosperm genomes
-
Gaut B, Ross Ibarra J. 2008. Selection on major components of angiosperm genomes. Science 320:484-486.
-
(2008)
Science
, vol.320
, pp. 484-486
-
-
Gaut, B.1
Ross Ibarra, J.2
-
27
-
-
70350294348
-
Systematic artifacts in metagenomes from complex microbial communities
-
Gomez-Alvarez V, Teal TK, Schmidt TM. 2009. Systematic artifacts in metagenomes from complex microbial communities. ISME J. 3:1314-1317.
-
(2009)
ISME J.
, vol.3
, pp. 1314-1317
-
-
Gomez-Alvarez, V.1
Teal, T.K.2
Schmidt, T.M.3
-
28
-
-
67349176068
-
Genetics in geographically structured populations: Defining, estimating and interpreting F (ST)
-
Holsinger K, Weir B. 2009. Genetics in geographically structured populations: defining, estimating and interpreting F (ST). Nat Rev Genet. 10:639-650.
-
(2009)
Nat Rev Genet.
, vol.10
, pp. 639-650
-
-
Holsinger, K.1
Weir, B.2
-
29
-
-
79952706183
-
The struggle for life of the genome's selfish architects
-
Hua-Van A, Le Rouzic A, Boutin TS, Filee J, Capy P. 2011. The struggle for life of the genome's selfish architects. Biol Direct. 6:19.
-
(2011)
Biol Direct.
, vol.6
, pp. 19
-
-
Hua-Van, A.1
Le Rouzic, A.2
Boutin, T.S.3
Filee, J.4
Capy, P.5
-
30
-
-
0037062465
-
Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat
-
Huang S, Sirikhachornkit A, Su XJ, Faris J, Gill B. 2002. Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat. Proc Natl Acad Sci U S A. 99:8133-8138.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 8133-8138
-
-
Huang, S.1
Sirikhachornkit, A.2
Su, X.J.3
Faris, J.4
Gill, B.5
-
31
-
-
80052854314
-
Families of transposable elements, population structure and the origin of species
-
Jurka J, Bao W, Kojima K. 2011. Families of transposable elements, population structure and the origin of species. Biol Direct. 6:44.
-
(2011)
Biol Direct.
, vol.6
, pp. 44
-
-
Jurka, J.1
Bao, W.2
Kojima, K.3
-
32
-
-
0034612315
-
Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence
-
Kalendar R, Tanskanen J, Immonen S, Nevo E, Schulman AH. 2000. Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence. Proc Natl Acad Sci U S A. 97:6603-6607.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 6603-6607
-
-
Kalendar, R.1
Tanskanen, J.2
Immonen, S.3
Nevo, E.4
Schulman, A.H.5
-
33
-
-
1542513556
-
Mobile elements: Drivers of genome evolution
-
Kazazian HH. 2004. Mobile elements: drivers of genome evolution. Science 303:1626-1632.
-
(2004)
Science
, vol.303
, pp. 1626-1632
-
-
Kazazian, H.H.1
-
34
-
-
69749117757
-
Contrasting evolutionary dynamics between angiosperm and mammalian genomes
-
Kejnovsky E, Leitch IJ, Leitch AR. 2009. Contrasting evolutionary dynamics between angiosperm and mammalian genomes. Trends Ecol Evol. 24:572-582.
-
(2009)
Trends Ecol Evol.
, vol.24
, pp. 572-582
-
-
Kejnovsky, E.1
Leitch, I.J.2
Leitch, A.R.3
-
36
-
-
33846902534
-
Genome ecosystem and transposable elements species
-
Le Rouzic A, Dupas S, Capy P. 2007. Genome ecosystem and transposable elements species. Gene 390:214-220.
-
(2007)
Gene
, vol.390
, pp. 214-220
-
-
Le Rouzic, A.1
Dupas, S.2
Capy, P.3
-
37
-
-
65649117685
-
DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
-
Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
38
-
-
0033150470
-
Molecular cytogenetic analysis of Aegilops cylindrica host
-
Linc G, Friebe B, Kynast RG. 1999. Molecular cytogenetic analysis of Aegilops cylindrica host. Genome 42:497-503.
-
(1999)
Genome
, vol.42
, pp. 497-503
-
-
Linc, G.1
Friebe, B.2
Kynast, R.G.3
-
39
-
-
8444242268
-
Sequence composition, organization, and evolution of the core Triticeae genome
-
Li WL, Zhang P, Fellers JP, Friebe B, Gill BS. 2004. Sequence composition, organization, and evolution of the core Triticeae genome. Plant J. 40:500-511.
-
(2004)
Plant J.
, vol.40
, pp. 500-511
-
-
Li, W.L.1
Zhang, P.2
Fellers, J.P.3
Friebe, B.4
Gill, B.S.5
-
40
-
-
38349101340
-
Repetitive DNA in the pea (Pisum sativum L.) genome: Comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula
-
Macas G, Pavel N, Navratilova A. 2007. Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula. BMC Genomics 8:427.
-
(2007)
BMC Genomics
, vol.8
, pp. 427
-
-
Macas, G.1
Pavel, N.2
Navratilova, A.3
-
41
-
-
84872488175
-
Comparative analysis of genome composition in Triticeae reveals strong variation in transposable element dynamics and nucleotide diversity
-
Forthcoming
-
Middleton C, Stein N, Keller B, Kilian B, Wicker T. Forthcoming 2012. Comparative analysis of genome composition in Triticeae reveals strong variation in transposable element dynamics and nucleotide diversity. Plant J. 73:347-356.
-
(2012)
Plant J.
, vol.73
, pp. 347-356
-
-
Middleton, C.1
Stein, N.2
Keller, B.3
Kilian, B.4
Wicker, T.5
-
42
-
-
77954854627
-
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
-
Novák P, Neumann P, Macas J. 2010. Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data. BMC Bioinformatics 11:378.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 378
-
-
Novák, P.1
Neumann, P.2
Macas, J.3
-
43
-
-
70449341719
-
Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina
-
Parisod C, et al. 2009. Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina. New Phytol. 184:1003-1015.
-
(2009)
New Phytol.
, vol.184
, pp. 1003-1015
-
-
Parisod, C.1
-
44
-
-
84869832038
-
Differential dynamics of transposable elements during long-term diploidization of Nicotiana section Repandae (Solanaceae) allopolyploid genomes
-
Parisod C, et al. 2012. Differential dynamics of transposable elements during long-term diploidization of Nicotiana section Repandae (Solanaceae) allopolyploid genomes. PLoS One 7:e50352.
-
(2012)
PLoS One
, vol.7
-
-
Parisod, C.1
-
45
-
-
84875438593
-
Responses of transposable elements to polyploidy
-
Grandbastien MA, Casacuberta JM, editors, Berlin: Springer-Verlag
-
Parisod C, Senerchia N. 2012. Responses of transposable elements to polyploidy. In: Grandbastien MA, Casacuberta JM, editors. Plant transposable elements. Topics in current genetics. Vol. 24. Berlin: Springer-Verlag. p. 147-168.
-
(2012)
Plant Transposable Elements. Topics in Current genetics.
, vol.24
, pp. 147-168
-
-
Parisod, C.1
Senerchia, N.2
-
46
-
-
27144543515
-
Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations
-
Sabot F, et al. 2005. Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations. Mol Genet Genomics. 274:119-130.
-
(2005)
Mol Genet Genomics.
, vol.274
, pp. 119-130
-
-
Sabot, F.1
-
47
-
-
33845190150
-
Parasitism and the retrotransposon life cycle in plants: A hitchhiker's guide to the genome
-
Sabot F, Schulman AH. 2006. Parasitism and the retrotransposon life cycle in plants: a hitchhiker's guide to the genome. Heredity 97:381-388.
-
(2006)
Heredity
, vol.97
, pp. 381-388
-
-
Sabot, F.1
Schulman, A.H.2
-
48
-
-
80052273129
-
Genomics of transposable elements in the Triticeae
-
Muehlbauer GJ, Feuillet C, editors, New York: Springer-Verlag
-
Sabot F, Schulman AH. 2009. Genomics of transposable elements in the Triticeae. In: Muehlbauer GJ, Feuillet C, editors. Genetics and genomics of the Triticeae. New York: Springer-Verlag. p. 387-405.
-
(2009)
Genetics and Genomics of the Triticeae
, pp. 387-405
-
-
Sabot, F.1
Schulman, A.H.2
-
49
-
-
0013630297
-
Nested retrotransposons in the intergenic regions of the maize genome
-
San Miguel P, et al. 1996. Nested retrotransposons in the intergenic regions of the maize genome. Science 274:765-768.
-
(1996)
Science
, vol.274
, pp. 765-768
-
-
San Miguel, P.1
-
50
-
-
0036579672
-
Transposable elements, genes and recombination in a 215-kb contig from wheat chromosome 5A (m)
-
San Miguel P, Ramakrishna W, Bennetzen J, Busso C, Dubcovsky J. 2002. Transposable elements, genes and recombination in a 215-kb contig from wheat chromosome 5A (m). Funct Integr Genomics. 2:70-80.
-
(2002)
Funct Integr Genomics.
, vol.2
, pp. 70-80
-
-
San Miguel, P.1
Ramakrishna, W.2
Bennetzen, J.3
Busso, C.4
Dubcovsky, J.5
-
51
-
-
79952422304
-
Quality control and preprocessing of metagenomic datasets
-
Schmieder R, Edwards R. 2011. Quality control and preprocessing of metagenomic datasets. Bioinformatics 27:863-864.
-
(2011)
Bioinformatics
, vol.27
, pp. 863-864
-
-
Schmieder, R.1
Edwards, R.2
-
52
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable PS, et al. 2009. The B73 maize genome: complexity, diversity, and dynamics. Science 326:1112-1115.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
-
53
-
-
0032814604
-
Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates very among sites: Application to human mitochondrial DNA
-
Schneider S, Excoffier L. 1999. Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates very among sites: application to human mitochondrial DNA. Genetics 152:1079-1089.
-
(1999)
Genetics
, vol.152
, pp. 1079-1089
-
-
Schneider, S.1
Excoffier, L.2
-
54
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome
-
Slotkin RK, Martienssen R. 2007. Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet. 8:272-285.
-
(2007)
Nat Rev Genet.
, vol.8
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.2
-
55
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
56
-
-
84865806641
-
LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders
-
Sun G, et al. 2012. LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders. Genome Biol Evol. 4:168-183.
-
(2012)
Genome Biol Evol.
, vol.4
, pp. 168-183
-
-
Sun, G.1
-
57
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, et al. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731-2739.
-
(2011)
Mol Biol Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
-
58
-
-
77955273950
-
A triptych of the evolution of plant transposable elements
-
Tenaillon M, Hollister J, Gaut B. 2010. A triptych of the evolution of plant transposable elements. Trends Plant Sci. 15:471-478.
-
(2010)
Trends Plant Sci.
, vol.15
, pp. 471-478
-
-
Tenaillon, M.1
Hollister, J.2
Gaut, B.3
-
59
-
-
79960095966
-
Genome size and transposable element content as determined by highthroughput sequencing in maize and Zea luxurians
-
Tenaillon MI, Hufford MB, Gaut BS, Ross-Ibarra J. 2011. Genome size and transposable element content as determined by highthroughput sequencing in maize and Zea luxurians. Gen Biol Evol. 3:219-229.
-
(2011)
Gen Biol Evol.
, vol.3
, pp. 219-229
-
-
Tenaillon, M.I.1
Hufford, M.B.2
Gaut, B.S.3
Ross-Ibarra, J.4
-
60
-
-
83855165105
-
Repetitive DNA and next-generation sequencing: Computational challenges and solutions
-
Treangen TJ, Salzberg SL. 2012. Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nat Rev Genet. 13:36-46.
-
(2012)
Nat Rev Genet.
, vol.13
, pp. 36-46
-
-
Treangen, T.J.1
Salzberg, S.L.2
-
62
-
-
0032718558
-
Retrotransposon BARE-1 and its role in genome evolution in the genus Hordeum
-
Vicient CM, et al. 1999. Retrotransposon BARE-1 and its role in genome evolution in the genus Hordeum. Plant Cell 11:1769-1784.
-
(1999)
Plant Cell
, vol.11
, pp. 1769-1784
-
-
Vicient, C.M.1
-
63
-
-
0035102628
-
Active retrotransposons are a common feature of grass genomes
-
Vicient CM, Jaaskelainen MJ, Kalendar R, Jääskeläinen MJ, Schulman AH. 2001. Active retrotransposons are a common feature of grass genomes. Plant Physiol. 125:1283-1292.
-
(2001)
Plant Physiol.
, vol.125
, pp. 1283-1292
-
-
Vicient, C.M.1
Jaaskelainen, M.J.2
Kalendar, R.3
Jääskeläinen, M.J.4
Schulman, A.H.5
-
64
-
-
23844543047
-
LTR retrotransposons and flowering plant genome size: Emergence of the increase/decrease model
-
Vitte C, Panaud O. 2005. LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model. Cytogenet Genome Res. 110:91-107.
-
(2005)
Cytogenet Genome Res.
, vol.110
, pp. 91-107
-
-
Vitte, C.1
Panaud, O.2
-
65
-
-
84892662490
-
Gene and repetitive sequence annotation in the Triticeae
-
Muehlbauer GJ, Feuillet C, editors, New York: Springer-Verlag
-
Wicker T, Buell CR. 2009. Gene and repetitive sequence annotation in the Triticeae. In: Muehlbauer GJ, Feuillet C, editors. Genetics and genomics of the Triticeae. New York: Springer-Verlag. p. 407-425.
-
(2009)
Genetics and Genomics of the Triticeae
, pp. 407-425
-
-
Wicker, T.1
Buell, C.R.2
-
66
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
Wicker T, et al. 2007. A unified classification system for eukaryotic transposable elements. Nat Rev Genet. 8:973-982.
-
(2007)
Nat Rev Genet.
, vol.8
, pp. 973-982
-
-
Wicker, T.1
-
67
-
-
69249142634
-
A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley
-
Wicker T, et al. 2009. A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley. Plant J. 59:712-722.
-
(2009)
Plant J.
, vol.59
, pp. 712-722
-
-
Wicker, T.1
-
68
-
-
0024712231
-
Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data
-
Wolfe KH, Gouy ML, Yang YW, Sharp PM, Li WH. 1989. Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc Natl Acad Sci U S A. 86:6201-6205.
-
(1989)
Proc Natl Acad Sci U S A
, vol.86
, pp. 6201-6205
-
-
Wolfe, K.H.1
Gouy, M.L.2
Yang, Y.W.3
Sharp, P.M.4
Li, W.H.5
-
69
-
-
84876799103
-
Mobile element biology: New possibilities with high-throughput sequencing
-
pii:S0168-95251200206-5
-
Xing J, Witherspoon DJ, Jorde LB. 2013. Mobile element biology: new possibilities with high-throughput sequencing. Trends Genet. pii:S0168-9525 (12) 00206-5.
-
(2013)
Trends Genet.
-
-
Xing, J.1
Witherspoon, D.J.2
Jorde, L.B.3
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