Locked Nucleic Acid (LNA)-based nucleic acid sensors

Journal of Bioanalysis and Biomedicine

Volumn 5, Issue 2, 2013, Pages

  Mishra, Sourav ^a   Mukhopadhyay, Rupa ^a  

^a DEPARTMENT OF MATERIALS SCIENCE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER; DNA; LOCKED NUCLEIC ACID; MAGNESIUM ION; MICRORNA; OLIGONUCLEOTIDE; PEPTIDE NUCLEIC ACID; RNA;

BIOSENSOR; CHRONIC MYELOID LEUKEMIA; COVALENT BOND; DNA PROBE; EDITORIAL; FLUORESCENCE POLARIZATION; GENE EXPRESSION PROFILING; HUMAN; LIMIT OF DETECTION; MICROARRAY ANALYSIS; MOLECULAR BEACON; NONHUMAN; NUCLEIC ACID ANALYSIS; NUCLEIC ACID HYBRIDIZATION; NUCLEIC ACID IMMOBILIZATION; PHYSICAL CHEMISTRY; SIGNAL TRANSDUCTION; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84881483573     PISSN: None     EISSN: 1948593X     Source Type: Journal    
DOI: None     Document Type: Editorial

References (26)

1. Newman JD, Tigwell LJ, Turner APF, Warner PJ (2004) Biosensors: a clearer view. Cranfield University.
2. Labuda J, Oliveira Brett AM, Evtugyn G, Fojta M, Mascini M, et al. (2010) Electrochemical nucleic acid-based biosensors: concepts, terms, and methodology (IUPAC Technical report). Pure Appl Chem 82: 1161-1187.
3. Juskowiak B (2011) Nucleic acid-based fluorescent probes and their analytical potential. Anal Bioanal Chem 399: 3157-3176.
4. Rasooly A, Herold K (2009) Biosensors and biodetection: methods and protocols volume1: optical-based detectors. vol 503. Humana Press.
5. Rasooly A, Herold K (2009) Biosensors and biodetection: methods and protocols volume 2: electrochemical and mechanical detectors, lateral flow and ligands for biosensors vol 504. Humana Press.
6. Sassolas A, Leca-Bouvier BD, Blum LJ (2008) DNA biosensors and microarrays. Chem Rev 108: 109-139.
7. Fritz J, Baller MK, Lang HP, Rothuizen H, Vettiger P, et al. (2000) Translating biomolecular recognition into nanomechanics. Science 288: 316-318.
8. Mukhopadhyay R, Lorentzen M, Kjems J, Besenbacher F (2005) Nanomechanical sensing of DNA sequences using piezoresistive cantilevers. Langmuir 21: 8400-8408.
9. Drummond TG, Hill MG, Barton JK (2003) Electrochemical DNA sensors. Nat Biotechnol 21: 1192-1199.
10. Hansen JA, Mukhopadhyay R, Hansen JÃ, Gothelf KV (2006) Femtomolar electrochemical detection of DNA targets using metal sulfide nanoparticles. J Am Chem Soc 128: 3860-3861.
11. Singh SK, Nielsen P, Koshkin AA, Wengel J (1998) LNA (locked nucleic acids): synthesis and high-affinity nucleic acid recognition. Chem Commun 455.
12. Koshkin AA, Nielsen P, Singh SK, Wengel J (1998) LNA (Locked Nucleic Acid): An RNA Mimic Forming Exceedingly Stable LNA:LNA Duplexes. J Am Chem Soc 120: 13252.
13. Vester B, Wengel J (2004) LNA (Locked Nucleic Acid): HighAffinity Targeting of Complementary RNA and DNA. Biochemistry 43: 13233.
14. Kurreck J, Wyszko E, Gillen C, Erdmann VA (2002) Design of antisense oligonucleotides stabilized by locked nucleic acids. Nucleic Acids Res 30: 1911-1918.
15. Martinez K, Estevez MC, Wu Y, Phillips JA, Medley CD, et al. (2009) Locked nucleic acid based beacons for surface interaction studies and biosensor development. Anal Chem 81: 3448-3454.
16. Petersen M, Wengel J (2003) LNA: a versatile tool for therapeutics and genomics. Trends Biotechnol 21: 74-81.
17. Orum H, Jakobsen MH, Koch T, Vuust J, Borre MB (1999) Detection of the factor V Leiden mutation by direct allele-specific hybridization of PCR amplicons to photoimmobilized locked nucleic acids. Clin Chem 45: 1898-1905.
18. Fang S, Lee HJ, Wark AW, Corn RM (2006) Attomole microarray detection of microRNAs by nanoparticle-amplified SPR imaging measurements of surface polyadenylation reactions. J Am Chem Soc 128: 14044-14046.
19. Simeonov A, Nikiforov TT (2002) Single nucleotide polymorphism genotyping using short, fluorescently labeled locked nucleic acid (LNA) probes and fluorescence polarization detection. Nucleic Acids Res 30: e91.
20. Wang L, Yang CJ, Medley CD, Benner SA, Tan W (2005) Locked nucleic acid molecular beacons. J Am Chem Soc 127: 15664-15665.
21. Chen J, Zhang J, Wang K, Lin X, Huang L, et al. (2008) Electrochemical biosensor for detection of BCR/ABL fusion gene using locked nucleic acids on 4-aminobenzenesulfonic acid-modified glassy carbon electrode. Anal Chem 80: 8028-8034.
22. Lin L, Liu Q, Wang L, Liu A, Weng S, et al. (2011) Enzyme-amplified electrochemical biosensor for detection of PML-RARα fusion gene based on hairpin LNA probe. Biosens Bioelectron 28: 277-283.
23. Laschi S, Palchetti I, Marrazza G, Mascini M (2009) Enzyme-amplified electrochemical hybridization assay based on PNA, LNA and DNA probe-modified micro-magnetic beads. Bioelectrochemistry 76: 214-220.
24. Darfeuille F, Hansen JB, Orum H, Di Primo C, Toulme JJ (2004) LNA/DNA chimeric oligomers mimic RNA aptamers targeted to the TAR RNA element of HIV-1. Nucleic Acids Res 32: 3101-3107.
25. Mishra S, Ghosh S, Mukhopadhyay R (2012) Ordered self-assembled locked nucleic acid (LNA) structures on gold(111) surface with enhanced single base mismatch recognition capability. Langmuir 28: 4325-4333.
26. Mishra S, Ghosh S, Mukhopadhyay R (2013) Maximizing mismatch discrimination by surface-tethered locked nucleic acid probes via ionic tuning. Anal Chem 85: 1615-1623.