Whole-cell phase contrast imaging at the nanoscale using Fresnel Coherent Diffractive Imaging Tomography

Scientific Reports

Volumn 3, Issue , 2013, Pages

  Jones, Michael W M ^a   Van Riessen, Grant A ^a   Abbey, Brian ^a   Putkunz, Corey T ^b   Junker, Mark D ^a   Balaur, Eugeniu ^a   Vine, David J ^c   McNulty, Ian ^d   Chen, Bo ^a,b   Arhatari, Benedicta D ^a   Frankland, Sarah ^b   Nugent, Keith A ^a,b   Tilley, Leann ^b   Peele, Andrew G ^a,e  

^a LA TROBE UNIVERSITY   (Australia)

^b UNIVERSITY OF MELBOURNE   (Australia)

^c ARGONNE NATIONAL LABORATORY   (United States)

^d ARGONNE NATIONAL LABORATORY   (United States)

^e AUSTRALIAN SYNCHROTRON   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER ASSISTED TOMOGRAPHY; CYTOLOGY; ERYTHROCYTE; HUMAN; PARASITOLOGY; PROCEDURES; SINGLE CELL ANALYSIS; ARTICLE; METHODOLOGY;

ERYTHROCYTES; HUMANS; SINGLE-CELL ANALYSIS; TOMOGRAPHY, X-RAY COMPUTED;

EID: 84881342547     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep02288     Document Type: Article

References (45)

1. Miao, J., Charalamous, P., Kirz, J.& Sayre, D. Extending the methodology of X-ray crystallography to allow imaging of micrometre-sized non-crystaline specimens. Nature 400, 342-344 (1999). (Pubitemid 29344194)
2. Chapman, H. N. et al. High-resolution ab initio three-dimentional x-ray diffraction microscopy. Journal of the Optical society of America A 23, 1179-1200 (2006).
3. Luu, M. B. et al. Multi-wavelength elemental contrast absorption imaging. Optics Express 19, 25969-25980 (2011).
4. Mancuso, A. P., Yefanov, O. M. & Vartanyants, I. A. Coherent diffractive imaging of biological samples at synchrotron and free electron laser facilities. Journal of Biotechnology 149, 229-237 (2010).
5. Jiang, H. et al. Quantitative 3D imaging of whole, unstained cells by using X-ray diffraction microscopy. PNAS 107, 11234-11239 (2010).
6. Nugent, K. A. Coherent methods in the X-ray sciences. Advances in Physics 59, 1-99 (2010).
7. Williams, G. J. et al. High-resolution X-ray imaging of Plasmodium falciparuminfected red blood cells. Cytomety A 73, 949-957 (2008).
8. Shapiro, D. et al. Biological imaging by soft x-ray diffraction microscopy. PNAS 102, 15343-15346 (2005). (Pubitemid 41528058)
9. Mancuso, A. P. et al. Internal structure of an intact Convallaria majalis pollen grain observed with X-ray Fresnel coherent diffractive imaging. Optics Express 20, 26778-26785 (2012).
10. Beckers, M. et al. Chemical contrast in soft X-ray ptychography. Physical Review Letters 107, 208101 (2011).
11. Howells, M. R. et al. An assessment of the resolution limitation due to radiationdamage in X-ray diffraction microscopy. Journal of Electron Spectroscopy and Related Phenomena 170, 4-12 (2009).
12. Bergh, M., Huldt, G., Timneanu, N., Maia, F. R. N. C. & Hajdu, J. Feasibility of imaging living cells at subnanometer resolutions by ultrafast X-ray diffraction. Quarterly Reviews of Biophysics 41, 181-204 (2008).
13. Sayre, D. Some implications of a theorem due to Shannon. Acta Crystallographica 5, 843 (1952).
14. Bates, R. H. T. Fourier phase problems are uniquely solvable in more than one dimension 1. underlying theory. Optik 61, 247-262 (1982).
15. Abbey, B. et al. Keyhole coherent diffractive imaging. Nature Physics 4, 394-398 (2008).
16. Williams, G. J. et al. Fresnel coherent diffractive imaging. Physical Review Letters 97, 0255061-0255064 (2006).
17. Rodenburg, J. M. et al. Hard X-ray lensless imaging of extended objects. Physical Review Letters 98, 034801 (2007).
18. Williams, G. J., Quiney, H. M., Peele, A. G. & Nugent, K. A. Coherent diffractive imaging and partial coherence. Physical Review B 75, 104102-104107 (2007).
19. Clark, J. N., Huang, X., Harder, R. & Robinson, I. K. High-resolution threedimensional partially coherent diffractive imaging. Nature Communications 3, 993 (2012).
20. Giewekemeyer, K. et al. Ptychographic coherent x-ray diffractive imaging in the water window. Optics Express 19, 1037-1050 (2011).
21. Giewekemeyer, K. et al. Quantitative biological imaging by ptychographic x-ray diffraction microscopy. PNAS 107, 529-534 (2010).
22. Dierolf, M. et al. Ptychographic X-ray computed tomography at the nanoscale. Nature 467, 436-440 (2010).
23. Wilke, R. N. et al. Hard X-ray imaging of bactirial cells: nano-diffraction and ptychographic reconstrcuction. Optics Express 20, 19232-19254 (2012).
24. Vine, D. J. et al. Ptychographic Fresnel coherent diffractive imaging. Physical Review A 80, 0638231-0638235 (2009).
25. Peterson, I. et al. Nanoscale Fresnel coherent diffraction imaging tomography using ptychography. Optics Express 20, 24678-24685 (2012).
26. Putkunz, C. T. et al. Phase-Diverse CoherentDiffractive Imaging: High Sensitivity with Low Dose. Physical Review Letters 106, 013903 (2011).
27. Goldberg, D. E. Hemoglobin degradation in Plasmodium-infected red blood cells. Seminars in Cell Biology 4, 355-361 (1993).
28. Gordon, R., Bender, R. & Herman, G. T. Algebraic reconstruction techinques (ART) for three-dimensional electron microscopy and X-ray photography. Journal of Theoretical Biology 29, 471-481 (1970).
29. Hanssen, E. et al. Cryo transmission X-ray imaging of the malaria parasite. P. falciparum. Journal of Structural Biology 173, 161-168 (2011).
30. Haldar, K. & Mohandas, N. Erythrocyte remodeling by malaria parasites. Current Opinion in Hematology 14, 203-209 (2007). (Pubitemid 46597604)
31. Bannister, L. H., Hopkins, J. M., Margos, G., Dluzewski, A. R. & Mitchell, G. H. Three-dimensional ultrastructure of the ring stage of Plasmodium falciparum: Evidence for export pathways. Microscopy and Mcroanalysis 10, 551-562 (2004). (Pubitemid 39404018)
32. Henke, B. L., Gullikson, E. M. & Davis, J. C. X-ray interactions: photoabsorption, scattering, transmission, and reflection at E 5 50-30000 eV, Z 5 1-92. Atomic Data and Nuclear Data Tables 54, 181-342 (1993).
33. Pagola, S., Stephens, P. W., Bohle, D. S., Kosar, A. D.& Madsen, S. K. The structure of malaria pigment b-haematin. Nature 404, 307-310 (2000).
34. Hanssen, E. et al. Soft X-ray microscopy analysis of cell volume and hemoglobin content in erythrocytes infected with asexual and sexual stages of Plasmodium falciparum. Journal of Structural Biology 177, 224-232 (2012).
35. Bozdech, Z. et al. The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. PLoS Biology 1, 85-100 (2003).
36. Quiney, H. M., Peele, A. G., Cai, Z., Paterson, D. & Nugent, K. A. Diffractive imaging of highly focused X-ray fields. Nature Physics 2, 101-104 (2006). (Pubitemid 43731379)
37. Kaulich, B., Thibault, P., Gianoncelli, A. & Kiskinova, M. Transmission and emission x-ray microscopy: operation modes, contrast mechanisms and applications. Journal of Physics: Condensed Matter 23, 083002 (2011).
38. Larabell, C. A. & Le Gros, M. A. X-ray tomography generates 3-D reconstructions of the yeast, Saccharomyces cervisiae, at 60-nmresolution. Molecular Biology of the Cell 15, 957-962 (2004). (Pubitemid 38316206)
39. Chen, B. et al.Diffraction imaging: The limits of partial coherence. Physical Review B 86, 235401 (2012).
40. Doering, D. et al.Development of a compact fastCCDcamera and resonant soft xray scattering endstation for time-resolved pump-probe experiments. Review of Scientific Instruments 82, 073303 (2011).
41. McNulty, I. et al. A beamline for 1-4 keV microscopy and coherence experiments at the Advanced Photon Source. Review of Scientific Instruments 67, 3372 (1996).
42. Vine, D. J. et al. An in-vacuum x-ray diffraction microscope for use in the 0.7- 2.9 keV range. Review of Scientific Instruments 83, 033703 (2012).
43. Putkunz, C. T. et al. Fresnel coherent diffraction tomography. Optics Express 18, 11746-11753 (2010).
44. Born, M. & Wolf, E. Principles of Optics: Electromagnetic Theory of Propagation, Interference and Diffraction of Light. 7 edn, (Cambridge University Press, 1999).
45. Clark, J. N. et al. Use of a complex constraint in coherent diffractive imaging. Optics Express 18, 1981-1993 (2010).