Biotechnology advances: A perspective on the diagnosis and research of rabies virus

Biologicals

Volumn 41, Issue 4, 2013, Pages 217-223

  Silva, S R ^a   Katz, I S S ^a   Mori, E ^a   Carnieli, P ^a   Vieira, L F P ^b   Batista, H B C R ^a   Chaves, L B ^a   Scheffer, K C ^a  

^a Instituto Pasteur de Sao Paulo   (Brazil)

^b Espírito Santo Institute of Agricultural and Forestry Defense   (Brazil)

Author keywords

Monoclonal recombinant antibody; Phylogeography; Proteomic; Rabies; Real time RT PCR

Indexed keywords

BIOLOGICAL MARKER; MONOCLONAL ANTIBODY; RECOMBINANT ANTIGEN;

ANTEMORTEM EXAMINATION; ANTIBODY DETECTION; BIOASSAY; BIOTECHNOLOGY; COST; DIAGNOSTIC PROCEDURE; DISEASE MARKER; EARLY DIAGNOSIS; ECONOMIC ASPECT; FLUORESCENT ANTIBODY TECHNIQUE; HUMAN; IMMUNOAFFINITY CHROMATOGRAPHY; IMMUNOLOGY TEST KIT; LABORATORY DIAGNOSIS; MOLECULAR DIAGNOSIS; MOLECULAR EPIDEMIOLOGY; MOUSE INOCULATION TEST; NONHUMAN; PHYLOGEOGRAPHY; PRIORITY JOURNAL; PROTEOMICS; QUANTITATIVE ANALYSIS; RABIES; RABIES VIRUS; RANDOM AMPLIFIED POLYMORPHIC DNA; RAPID IMMUNODIAGNOSTIC ASSAY; RAPID TEST; REAL TIME POLYMERASE CHAIN REACTION; RECOMBINANT DNA TECHNOLOGY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; REVIEW; SENSITIVITY AND SPECIFICITY; VIRUS DETECTION; VIRUS IDENTIFICATION; VIRUS LOAD; VIRUS STRAIN; VIRUS TITRATION;

MONOCLONAL/RECOMBINANT ANTIBODY; PHYLOGEOGRAPHY; PROTEOMIC; RABIES; REAL-TIME RT-PCR;

ANIMALS; BIOLOGICAL MARKERS; BIOTECHNOLOGY; FLUORESCENT ANTIBODY TECHNIQUE; HUMANS; MICE; MOLECULAR EPIDEMIOLOGY; RABIES; RABIES VIRUS;

RABIES VIRUS;

EID: 84881228358     PISSN: 10451056     EISSN: 10958320     Source Type: Journal    
DOI: 10.1016/j.biologicals.2013.04.002     Document Type: Review

References (96)

1. Hipólito O. Raiva. Doenças dos Animais Transmissíveis ao Homem 1948, 31-37. Serviço de Informação Agrícola, Ministério da Agricultura Inc., Rio de Janeiro.
2. World Health Organization WHO expert consultation on rabies 2005, First Report, WHO, Geneva, [Technical Report Series 931]. Available from:. http://www.who.int/rabies/trs931%252006_05.pdf.
3. Doc Electronic (internet) ICTVdB - The Universal Virus Database. Available from: http://www.ictvonline.org/virusTaxonomy.asp%3fversion%3d2011.
4. Adams M.J., Carstens E.B. Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses. Arch Virol 2012, 157:1411-1422.
5. Wunner H.W. Rabies virus. Rabies 2007, 23-68. Academic Press Inc., San Diego. A.C. Jackson, H.W. Wunner (Eds.).
6. Meslin F.-X., Kaplan M.M. An overview of laboratory techniques in the diagnosis and prevention of rabies and in rabies research. Laboratory techniques in rabies 1996, 9-27. World Health Organization, Geneva. 4th ed. F.X. Meslin, M.M. Kaplan, H. Koprowski (Eds.).
7. Wiktor T.J., Koprowski H. Monoclonal antibodies against rabies virus produced by somatic cell hybridization: detection of antigenic variants. Proc Natl Acad Sci 1978, 75:3938-3942.
8. Wiktor T.J., Flamand A., Koprowski H. Use of monoclonal antibodies in diagnosis of rabies virus infection and differentiation of rabies and rabies-related viruses. JVirol Methods 1980, 1:33-46.
9. Tordo N., Poch O., Ermine A., Keith G. Primary structure of leader RNA and nucleoprotein genes of the rabies genome: segmented homology with VSV. Nucleic Acids Res 1986, 14:2671-2683.
10. Roehe P.M., Pantoja L.D., Schaefer R., Nardi N.B., King A.A. Analysis of Brazilian rabies virus isolates with monoclonal antibodies to lyssavirus antigens. Rev Microbiol 1997, 28:288-292.
11. Loza-Rubio E., Aguilar-Setién A., Bahloul C., Brochier B., Pastoret P.P., Tordo N. Discrimination between epidemiological cycles of rabies in Mexico. Arch Med Res 1999, 30:144-149.
12. Ito M., Arai Y.T., Itou T., Sakai T., Ito F.H., Takasaki T., et al. Genetic characterization and geographic distribution of rabies virus isolates in Brazil: identification of two reservoirs, dogs and vampire bats. Virology 2001, 284:214-222.
13. Ito M., Itou T., Shoji Y., Sakai T., Ito F.H., Arai Y.T., et al. Discrimination between dog-related and vampire bat-related rabies viruses in Brazil by strain-specific reverse transcriptase-polymerase chain reaction and restriction fragment length polymorphism analysis. JClin Virol 2003, 26:317-330.
14. Favoretto S.R., Carrieri M.L., Cunha E.M.S., Aguiar E.A.C., Silva L.H.Q., Sodré M.M., et al. Antigenic typing of Brazilian rabies virus samples isolated from animals and humans, 1989-2000. Rev Inst Med Trop São Paulo 2002, 44:91-95.
15. Schaefer R., Batista H.B.C.R., Franco A.C., Rijsewijk F.A.M., Roehe P.M. Studies on antigenic and genomic properties of Brazilian rabies virus isolates. Vet Microbiol 2005, 107:161-170.
16. Carnieli P., Brandão P.E., Carrieri M.L., Castilho J.G., Macedo C.I., Lindenberg M.M., et al. Molecular epidemiology of rabies virus strains isolated from wild canids in Northeastern Brazil. Virus Res 2006, 120:113-120.
17. Oliveira R de N., de Souza S.P., Lobo R.S., Castilho J.G., Macedo C.I., Carnieli P., et al. Rabies virus in insectivorous bats: implications of the diversity of the nucleoprotein and glycoprotein genes for molecular epidemiology. Virology 2010, 405:352-360.
18. Campos A.C., Melo F.L., Romano C.M., Araujo D.B., Cunha E.M., Sacramento D.R., et al. One-step protocol for amplification of near full-length cDNA of the rabies virus genome. JVirol Methods 2011, 174:1-6.
19. Wacharapluesadee S., Hemachudha T. Ante- and post-mortem diagnosis of rabies using nucleic acid-amplification tests. Expert Rev Mol Diagn 2010, 10:207-218.
20. Wacharapluesadee S., Phumesin P., Supavonwong P., Khawplod P., Intarut N., Hemachudha T.J. Comparative detection of rabies RNA by NASBA, real-time PCR and conventional PCR. Virol Methods 2011, 175:278-282.
21. Biswal M., Ratho R.K., Mishra B. Role of reverse transcriptase polymerase chainreaction for the diagnosis of human rabies. Indian J Med Res 2012, 135:837-842.
22. Bermingham E., Moritz C. Comparative phylogeography: concepts and applications. Mol Ecol 1998, 7:367-369.
23. Davis P.L., Holmes E.C., Larrous F., Van der Poel W.H., Tjornehoj K., Alonso W.J., et al. Phylogeography, population dynamics, and molecular evolution of European bat lyssaviruses. JVirol 2005, 79:10487-10497.
24. Rupprecht C.E., Hanlon A.C., Hemachudha T. Rabies re-examined. Lancet Infec Dis 2002, 2:327-343.
25. Thanomsridetchai N., Singhto N., Tepsumethanon V., Shuangshoti S., Wacharapluesadee S., Sinchaikul S., et al. Comprehensive proteome analysis of hippocampus, brainstem, and spinal cord from paralytic and furious dogs naturally infected with rabies. JProteome Res 2011, 10:4911-4924.
26. Dietzschold B., Rupprecht C.E., Tollis M., Lafon M., Mattei J., Wiktor T.J., et al. Antigenic diversity of the glycoprotein and nucleocapsid proteins of rabies and rabies-related viruses: implications for epidemiology and control of rabies. Rev Infect Dis 1988, 10:785-798.
27. Lembo T., Niezgoda N., Velasco-Villa A., Cleaveland S., Ernest E., Rupprecht C.E. Evaluation of a direct, rapid immunohistochemical test for rabies diagnosis. Emerg Infect Dis 2006, 12:310-313.
28. Altshuler E.P., Serebryanaya D.V., Katrukha A.G. Generation of recombinant antibodies and means for increasing their affinity. Biochemistry 2010, 75:1584-1605.
29. Mullis K.B., Faloona F. Specific synthesis of DNA invitro via a polymerase catalyzed chain reaction. Methods Enzymol 1987, 155:335-350.
30. Black E.M., McElhinney L.M., Lowings J.P., Smith J., Johnstone P., Heaton P.R. Molecular methods to distinguish between classical rabies and the rabies-related European bat lyssaviruses. JVirol Methods 2000, 87:123-131.
31. Sacramento D., Bourhy H., Tordo N. PCR technique as an alternative method for diagnosis and molecular epidemiology of rabies virus. Mol Cell Probes 1991, 5:229-240.
32. Heaton P.R., Johnstone P., McElhinney L.M., Cowley R., O'Sullivan E., Whitby J.E. Heminested PCR assay for detection of six genotypes of rabies and rabies-related viruses. JClin Microbiol 1997, 35:2762-2766.
33. Kamolvarin N., Tirawatnpong T., Rattanasiwamoke R., Tirawatnpong S., Panpanich T., Hemachudha T. Diagnosis of rabies by polymerase chain reaction with nested primers. JInfect Dis 1993, 167:207-210.
34. Allendorf S.D., Cortez A., Heinemann M.B., Harary C.M., Antunes J.M., Peres M.G., et al. Rabies virus distribution in tissue and molecular characterization of strains from naturally infected non-hematophagous bats. Virus Res 2012, 165:119-125.
35. McElhinney L.M., Fooks A.R., Radford A.D. Diagnostic tools for the detection of rabies virus. Eur J Companion Anim Pract 2008, 18:224-231.
36. Smith I.L., Northill J.A., Harrower B.J., Smith G.A. Detection of Australian bat lyssavirus using a fluorogenic probe. JClin Virol 2002, 25:285-291.
37. Fooks A.R. Development of a real-time, TaqMan reverse transcription-PCR assay for detection and differentiation of lyssavirus genotypes 1, 5, and 6. JClin Microbiol 2005, 43:2786-2792.
38. Coertse J., Weyer J., Nel L.H., Markotter W. Improved PCR methods for detection of African rabies and rabies-related lyssaviruses. JClin Microbiol 2010, 48:3949-3955.
39. Nadin-Davis S.A., Sheen M., Wandeler A.I. Development of real-time reverse transcriptase polymerase chain reaction methods for human rabies diagnosis. JMed Virol 2009, 81:1484-1497.
40. Hoffmann B., Freuling C.M., Wakeley P.R., Rasmussen T.B., Leech S., Fooks A.R., et al. Improved safety for molecular diagnosis of classical rabies viruses by use of a TaqMan real-time reverse transcription-PCR "double check" strategy. JClin Microbiol 2010, 48:3970-3978.
41. Hayman D.T., Banyard A.C., Wakeley P.R., Harkess G., Marston D., Wood J.L., et al. Auniversal real-time assay for the detection of Lyssaviruses. JVirol Methods 2011, 177:87-93.
42. Hughes G.J., Smith J.S., Hanlon C.A., Rupprecht C.E. Evaluation of a TaqMan PCR assay to detect rabies virus RNA: influence of sequence variation and application to quantification of viral loads. JClin Microbiol 2004, 42:299-306.
43. Wacharapluesadee S., Sutipanya J., Damrongwatanapokin S., Phumesin P., Chamnanpood P., Leowijuk C., et al. Development of a TaqMan real-time RT-PCR assay for the detection of rabies virus. JVirol Methods 2008, 151:317-320.
44. Holmes E.C. The phylogeography of human viruses. Mol Ecol 2004, 13:745-756.
45. Gottschling M., Stamatakis A., Nindl I., Stockfleth E., Alonso A., Bravo I.G. Multiple evolutionary mechanisms drive papillomavirus diversification. Mol Biol Evol 2007, 24:1242-1258.
46. Domingo E., Holland J.J. Mutation rates and rapid evolution of RNA viruses. The evolutionary biology of viruses 1994, 161-184. Raven Press, New York. S.S. Morse (Ed.).
47. Carnieli P., Fahl Wde O., Brandão P.E., Oliveira Rde N., Macedo C.I., Durymanova E., et al. Comparative analysis of rabies virus isolates from Brazilian canids and bats based on the G gene and G-L intergenic region. Arch Virol 2010, 155:941-948.
48. Bourhy H., Reynes J.M., Dunham E.J., Dacheux L., Larrous F., Huong V.T., et al. The origin and phylogeography of dog rabies virus. JGen Virol 2008, 89:2673-2681.
49. Lemey P., Rambaut A., Drummond A.J., Suchard M.A. Bayesian phylogeography finds its roots. PLoS Comput Biol 2009, 5:1-16.
50. Lemey P., Rambaut A., Welch J.J., Suchard M.A. Phylogeography takes a relaxed random walk in continuous space and time. Mol Biol Evol 2010, 27:1877-1885.
51. Carnieli P., Oliveira Rde N., Macedo C.I., Castilho J.G. Phylogeography of rabies virus isolated from dogs in Brazil between 1985 and 2006. Arch Virol 2011, 156:1007-1012.
52. Hughes G.J., Orciari L.A., Rupprecht C.E. Evolutionary timescale of rabies virus adaptation to North American bats inferred from the substitution rate of the nucleoprotein gene. JGen Virol 2005, 86:1467-1474.
53. Biek R., Henderson J.C., Waller L.A., Rupprecht C.E., Real L.A. Ahigh-resolution genetic signature of demographic and spatial expansion in epizootic rabies virus. PNAS 2007, 104:7993-7998.
54. David D., Hughes G.J., Yakobson B.A., Davidson I., Un H., Aylan O., et al. Identification of novel canine rabies virus clades in the Middle East and North Africa. JGen Virol 2007, 88:967-980.
55. Lembo T., Haydon D.T., Velasco-Villa A., Rupprecht C.E., Packer C., Brandao P.E., et al. Molecular epidemiology identifies only a single rabies virus variant circulating in complex carnivore communities of the Serengeti. Proc Roy Soc B 2007, 274:2123-2130.
56. Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 2007, 7:214-221.
57. Talbi C., Lemey P., Suchard M.A., Abdelatif E., Elharrak M., Nourlil J., et al. Phylodynamics and human-mediated dispersal of a zoonotic virus. PLoS Pathog 2010, 6:6-10.
58. Carnieli P., Fahl Wde O., Castilho J.G., Oliveira Rde N., Macedo C.I., Durymanova E., et al. Characterization of Rabies virus isolated from canids and identification of the main wild canid host in Northeastern Brazil. Virus Res 2008, 131:33-46.
59. Carnieli P., Castilho J.G., Fahl Wde O., Véras N.M., Carrieri M.L., Kotait I. Molecular characterization of Rabies Virus isolates from dogs and crab-eating foxes in Northeastern Brazil. Virus Res 2009, 141:81-89.
60. Brunker K., Hampson K., Horton D.L., Biek R. Integrating the landscape epidemiology and genetics of RNA viruses: rabies in domestic dogs as a model 2012, 139:1899-1913.
61. Corthals G.L., Wasinger V.C., Hochstrasser D.F., Sanchez J.C. The dynamic range of protein expression: a challenge for proteomic research. Electrophoresis 2000, 21:1104-1115.
62. Angel T.E., Aryal U.K., Hengel S.M., Baker E.S., Kelly R.T., Robinson E.W., et al. Mass spectrometry-based proteomics: existing capabilities and future directions. Chem Soc Rev 2012, 41:3912-3928.
63. Wang X., Zhang S., Sun C., Yuan Z.G., Wu X., Wang D., et al. Proteomic profiles of mouse neuro N2a cells infected with variant virulence of rabies viruses. JMicrobiol Biotechnol 2011, 21:366-373.
64. Zandi F., Eslami N., Soheili M., Fayaz A., Gholami A., Vaziri B. Proteomics analysis of BHK-21 cells infected with a fixed strain of rabies virus. Proteomics 2009, 9:2399-2407.
65. Dhingra V., Li X., Liu Y., Fu Z.F. Proteomic profiling reveals that rabies virus infection results in differential expression of host proteins involved in ion homeostasis and synaptic physiology in the central nervous system. JNeurovirol 2007, 13:107-117.
66. Fu Z.F., Li X., Dhingra V. Pathogenic rabies virus alters host protein expression in the central nervous system: implications for neuronal dysfunction. Dev Biol (Basel) 2008, 131:83-91.
67. Vaziri B., Rahimpour M., Eslami N., Fayaz A., Rahimian H. RP-HPLC prefractionation and its application in expressional proteomics analysis of an invitro viral infection model. JSep Sci 2006, 29:2284-2291.
68. Monteoliva L., Albar J.P. Differential proteomics: an overview of gel and non-gel based approaches. Brief Funct Genomic Proteomic 2004, 3:220-239.
69. Jiang X.S., Tang L.Y., Dai J., Zhou H., Li S.J., Xia Q.C., et al. Quantitative analysis of severe acute respiratory syndrome (SARS)-associated coronavirus-infected cells using proteomic approaches: implications for cellular responses to virus infection. Mol Cell Proteomics 2005, 4:902-913.
70. Latterich M., Abramovitz M., Leyland-Jones B. Proteomics: new technologies and clinical applications. Eur J Cancer 2008, 44:2737-2741.
71. Kohler G., Milstein C. Continuous cultures of fused cells secreting antibody of predefined specificity. Nature 1975, 256:495-497.
72. Trimarchi C., Debbie J.G. The fluorescent antibody in rabies. The natural history of rabies viruses 1991, 220-229. CRC Press, Boca Raton. G. Baer (Ed.).
73. Hamir A.N., Moser G., Fu Z.F., Dietzschold B., Rupprecht C.E. Immunohistochemical test for rabies: identification of a diagnostically superior monoclonal antibody. Vet Rec 1995, 136:295-296.
74. Fekadu M., Greer P.W., Chandler F.W., Sanderlin D.W. Use of the avidin-biotin peroxidase system to detect rabies antigen in formalin-fixed paraffin-embedded tissues. JVirol Methods 1988, 19:91-96.
75. Zanluca C., Passos Aires L.R., Mueller P.P., Valgas dos Santos V., Carrieri M.L., Pinto A.R., et al. Novel monoclonal antibodies that bind to wild and fixed rabies vírus strains. JVirol Methods 2011, 175:66-73.
76. Motoi Y., Inoue S., Hatta H., Sato K., Morimoto K., Yamada A. Detection of rabies specific antigens by egg yolk antibody (IgY) to the recombinant rabies virus proteins produced in Escherichia coli. Jpn J Infect Dis 2005, 58:115-118.
77. Xu G., Weber P., Hu Q., Xue H., Audry L., Li C., et al. WELYSSA: a simple tool using mouse monoclonal antibodies for the detection of lyssavirus nucleocapsid in rabies suspected specimens. Dev Biol (Basel) 2008, 131:555-561.
78. Jun L.V.X., Jun M.X., Hua W., Hao L.I., Xin S.X., Peng Cheng Y., et al. Preparation and initial application of a monoclonal antibody specific for a newly discovered conserved linear epitope of rabies virus nucleoprotein. Biomed Environ Sci 2012, 25:98-103.
79. Jiang Y., Luo Y., Michel F., Hogan R.J., He Y., Fu Z.F. Characterization of conformation-specific monoclonal antibodies against rabies virus nucleoprotein. Arch Virol 2010, 155:1187-1192.
80. Wang W.J., Li X., Wang L.H., Shan H., Cao L., Peng-cheng Y., et al. Preparation and identification of anti-rabies virus monoclonal antibodies. Virol Sin 2012, 27:172-178.
81. Durr S., Naissengar S., Mindekem R., Diguimbye C., Niezgoda M., Kuzmin I., et al. Rabies diagnosis for developing countries. Plos Negl Trop Dis 2008, 2:1-6.
82. Kang B., Oh J., Lee C., Park B.K., Park Y., Hong K., et al. Evaluation of a rapid immunodiagnostic test kit for rabies virus. JVirol Methods 2007, 145:30-36.
83. Xu G., Weber P., Hu Q., Xue H., Audry L., Li C., et al. A simple sandwich ELISA (WELYSSA) for the detection of lyssavirus nucleocapsid in rabies suspected specimens using mouse monoclonal antibodies. Biologicals 2007, 35:297-302.
84. Feyssaguet M., Dacheux L., Audry L., Compoint A., Morize J.L., Blanchard I., et al. Multicenter comparative study of a new ELISA, PLATELIA RABIES II, for the detection and titration of anti-rabies glycoprotein antibodies and comparison with the rapid fluorescent focus inhibition test (RFFIT) on human samples from vaccinated and non-vaccinated people. Vaccine 2007, 25:2244-2251.
85. Nishizono A., Khawplod P., Ahmed K., Goto K., Shiota S., Mifune K., et al. Asimple and rapid immunochromatographic test kit for rabies diagnosis. Microbiol Immunol 2008, 52:243-249.
86. Dong-Kun Y., Eun-Kyung S., Yoon-I O., Kyung-Woo L., Chung-San L., Seo-Young K., et al. Comparison of four diagnostic methods for detecting rabies viruses circulating in Korea. JVet Sci 2012, 13:43-48.
87. Ahmed K., Wimalaratne O., Dahal N., Khawplod P., Nanayakkara S., Rinzin K., et al. Evaluation of a monoclonal antibody-based rapid immunochromatographic test for direct detection of rabies virus in the brain of humans and animals. Am J Trop Med Hyg 2012, 84:736-740.
88. Yang L.M., Zhao L.Z., Hu R.L., Shi Z.S., Liu W.J. Anovel double-antigen sandwich enzyme-linked immunosorbent assay for measurement of antibodies against rabies virus. Clin Vaccine Immunol 2006, 13:966-968.
89. Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970, 227:680-685.
90. Orlandi R.D., Güssow H., Jones P.T., Winter G. Cloning immunoglobulin variable domains for expression by the polymerase chain reaction. Proc Natl Acad Sci 1989, 86:3833-3837.
91. McCafferty J., Griffiths A.D., Winter G., Chiswell D.J. Phage antibodies: filamentous phage displaying antibody variable domains. Nature 1990, 348:552-554.
92. Arap M.A. Phage display technology - applications and innovations. Mol Biol 2005, 28:1-9.
93. Aavula S.M., Nimmagadda S.V., Biradhar N., Sula S., Chandran D., Lingala R., et al. Generation and characterization of an scFv directed against site II of rabies glycoprotein. Biotechnol Res Int 2011, 2001:1-11.
94. Mousli M., Turki I., Kharmachi H., Dellagi K. Genetically engineered colorimetric single-chain antibody fusion protein for rapid diagnosis of rabies virus. Dev Bio (Basel) 2008, 131:483-491.
95. Kortt A.A., Lah M., Oddie G.W., Gruen C.L., Burns J.E., Pearce L.A., et al. Single-chain Fv fragments of anti-neuraminidase antibody NC10 containing five- and ten-residue linkers form dimers and with zero-residue linker a trimer. Protein Eng 1997, 10:423-433.
96. Nimmagadda S.V., Aavula S.M., Neelakantam B., Varaprasada S.R., Rajalakshmi S., Chandran D., et al. Recombinant diabody-based immunocapture enzyme-linked immunosorbent assay for quantification of rabies virus glycoprotein. Clin Vaccine Immunol 2010, 17:1261-1268.