-
1
-
-
2442448170
-
A fast Monte Carlo algorithm to simulate the spectrum of DNA damages formed by ionizing radiation
-
Semenenko VA, Stewart RD, (2004) A fast Monte Carlo algorithm to simulate the spectrum of DNA damages formed by ionizing radiation. Radiat Res 161: 451-457.
-
(2004)
Radiat Res
, vol.161
, pp. 451-457
-
-
Semenenko, V.A.1
Stewart, R.D.2
-
2
-
-
0023988217
-
Oxidative damage to DNA: relation to species metabolic rate and life span
-
Adelman R, Saul RL, Ames BN, (1988) Oxidative damage to DNA: relation to species metabolic rate and life span. Proc Natl Acad Sci U S A. 85: 2706-2708.
-
(1988)
Proc Natl Acad Sci U S A
, vol.85
, pp. 2706-2708
-
-
Adelman, R.1
Saul, R.L.2
Ames, B.N.3
-
3
-
-
0035850237
-
Cellular effects of 5-formyluracil in DNA
-
Bjelland S, Anensen H, Knaevelsrud I, Seeberg E, (2001) Cellular effects of 5-formyluracil in DNA. Mutat Res 486: 147-154.
-
(2001)
Mutat Res
, vol.486
, pp. 147-154
-
-
Bjelland, S.1
Anensen, H.2
Knaevelsrud, I.3
Seeberg, E.4
-
4
-
-
0035863859
-
Induction of T -> G and T -> A transversions by 5-formyluracil in mammalian cells
-
Kamiya H, Murata-Kamiya N, Karino N, Ueno Y, Matsuda A, et al. (2002) Induction of T -> G and T -> A transversions by 5-formyluracil in mammalian cells. Mutat Res 513: 213-222.
-
(2002)
Mutat Res
, vol.513
, pp. 213-222
-
-
Kamiya, H.1
Murata-Kamiya, N.2
Karino, N.3
Ueno, Y.4
Matsuda, A.5
-
5
-
-
28444461124
-
Stable, specific, and reversible base pairing via Schiff base
-
Dohno C, Okamoto A, Saito I, (2005) Stable, specific, and reversible base pairing via Schiff base. J Am Chem Soc 127: 16681-16684.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 16681-16684
-
-
Dohno, C.1
Okamoto, A.2
Saito, I.3
-
6
-
-
0028844785
-
Oxidation of thymine to 5-formyluracil in DNA: mechanisms of formation, structural implications, and base excision by human cell free extracts
-
Bjelland S, Eide L, Time RW, Stote R, Eftedal I, et al. (1995) Oxidation of thymine to 5-formyluracil in DNA: mechanisms of formation, structural implications, and base excision by human cell free extracts. Biochemistry 34: 14758-14764.
-
(1995)
Biochemistry
, vol.34
, pp. 14758-14764
-
-
Bjelland, S.1
Eide, L.2
Time, R.W.3
Stote, R.4
Eftedal, I.5
-
7
-
-
10644247699
-
Impact of the C1' configuration of abasic sites on DNA duplex structure
-
de Los Santos C, El-Khateeb M, Rege P, Tian K, Johnson F, (2004) Impact of the C1' configuration of abasic sites on DNA duplex structure. Biochemistry 43: 15349-15357.
-
(2004)
Biochemistry
, vol.43
, pp. 15349-15357
-
-
de Los Santos, C.1
El-Khateeb, M.2
Rege, P.3
Tian, K.4
Johnson, F.5
-
8
-
-
14844329864
-
Repair of oxidative damage of thymine by HeLa whole-cell extracts: simultaneous analysis using a microsupport and comparison with traditional PAGE analysis
-
Guerniou V, Rapin D, Millau JF, Bufflier E, Favier A, et al. (2005) Repair of oxidative damage of thymine by HeLa whole-cell extracts: simultaneous analysis using a microsupport and comparison with traditional PAGE analysis. Biochimie 87: 151-159.
-
(2005)
Biochimie
, vol.87
, pp. 151-159
-
-
Guerniou, V.1
Rapin, D.2
Millau, J.F.3
Bufflier, E.4
Favier, A.5
-
9
-
-
13744259832
-
Processing of a complex multiply damaged DNA site by human cell extracts and purified repair proteins
-
Eot-Houllier G, Eon-Marchais S, Gasparutto D, Sage E, (2005) Processing of a complex multiply damaged DNA site by human cell extracts and purified repair proteins. Nucleic Acids Res 33: 260-271.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 260-271
-
-
Eot-Houllier, G.1
Eon-Marchais, S.2
Gasparutto, D.3
Sage, E.4
-
10
-
-
0035289489
-
Role of the Escherichia coli and Human DNA Glycosylases That Remove 5-Formyluracil from DNA in the Prevention of Mutations
-
Zhang QM, (2001) Role of the Escherichia coli and Human DNA Glycosylases That Remove 5-Formyluracil from DNA in the Prevention of Mutations. J Radiat Res 42: 11-19.
-
(2001)
J Radiat Res
, vol.42
, pp. 11-19
-
-
Zhang, Q.M.1
-
11
-
-
67649871036
-
Opposite-base dependent excision of 5-formyluracil from DNA by hSMUG1
-
Knævelsrud I, Slupphaug G, Leiros I, Matsuda A, Ruoff P, et al. (2009) Opposite-base dependent excision of 5-formyluracil from DNA by hSMUG1. Int J Radiat Biol 85: 413-420.
-
(2009)
Int J Radiat Biol
, vol.85
, pp. 413-420
-
-
Knævelsrud, I.1
Slupphaug, G.2
Leiros, I.3
Matsuda, A.4
Ruoff, P.5
-
12
-
-
1542267787
-
Nucleotide Excision Repair of 5-Formyluracil in Vitro Is Enhanced by the Presence of Mismatched Bases
-
Kino K, Shimizu Y, Sugasawa K, Sugiyama H, Hanaoka F, (2004) Nucleotide Excision Repair of 5-Formyluracil in Vitro Is Enhanced by the Presence of Mismatched Bases. Biochemistry 43: 2682-2687.
-
(2004)
Biochemistry
, vol.43
, pp. 2682-2687
-
-
Kino, K.1
Shimizu, Y.2
Sugasawa, K.3
Sugiyama, H.4
Hanaoka, F.5
-
13
-
-
33747606458
-
Recognition of oxidized thymine base on the single-stranded DNA by replication protein A
-
Irie D, Ono A, Izuta S, (2006) Recognition of oxidized thymine base on the single-stranded DNA by replication protein A. Nucleosides, Nucleotides, and Nucleic Acids. 25: 439-451.
-
(2006)
Nucleosides, Nucleotides, and Nucleic Acids
, vol.25
, pp. 439-451
-
-
Irie, D.1
Ono, A.2
Izuta, S.3
-
14
-
-
78650020362
-
DNA Polymerases beta and lambda and Their Roles in DNA Replication and Repair
-
Belousova E, Lavrik O, (2010) DNA Polymerases beta and lambda and Their Roles in DNA Replication and Repair. Mol Biol (Mosk) 44: 839-855.
-
(2010)
Mol Biol (Mosk)
, vol.44
, pp. 839-855
-
-
Belousova, E.1
Lavrik, O.2
-
15
-
-
23444444813
-
DNA polymerase lambda mediates a back-up base excision repair activity in extracts of mouse embryonic fibroblasts
-
Braithwaite E, Prasad R, Shock D, Hou E, Beard W, et al. (2005) DNA polymerase lambda mediates a back-up base excision repair activity in extracts of mouse embryonic fibroblasts. J Biol Chem 280: 18469-1847.
-
(2005)
J Biol Chem
, vol.280
, pp. 11847-18469
-
-
Braithwaite, E.1
Prasad, R.2
Shock, D.3
Hou, E.4
Beard, W.5
-
16
-
-
0024291670
-
Expression of active rat DNA polymerase beta in Escherichia coli
-
Date T, Yamaguchi M, Hirose F, Nishimoto Y, Tanihara K, et al. (1998) Expression of active rat DNA polymerase beta in Escherichia coli. Biochemistry 27: 2983-2990.
-
(1998)
Biochemistry
, vol.27
, pp. 2983-2990
-
-
Date, T.1
Yamaguchi, M.2
Hirose, F.3
Nishimoto, Y.4
Tanihara, K.5
-
17
-
-
0039710446
-
Regulation of DNA replication and repair proteins through interaction with the front side of proliferating cell nuclear antigen
-
Jonsson Z, Hindges R, Hubscher U, (1998) Regulation of DNA replication and repair proteins through interaction with the front side of proliferating cell nuclear antigen. EMBO J 17: 2412-2425.
-
(1998)
EMBO J
, vol.17
, pp. 2412-2425
-
-
Jonsson, Z.1
Hindges, R.2
Hubscher, U.3
-
18
-
-
0028862933
-
Characterization of the XRCC1-DNA ligase III complex in vitro and its absence from mutant hamster cells
-
Caldecott K, Tucker J, Stanker L, Thompson L, (1995) Characterization of the XRCC1-DNA ligase III complex in vitro and its absence from mutant hamster cells. Nucleic Acids Res 23: 4836-4643.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 4643-4836
-
-
Caldecott, K.1
Tucker, J.2
Stanker, L.3
Thompson, L.4
-
19
-
-
0036071516
-
Synthesis of peptide-oligonucleotide conjugates with single and multiple peptides attached to 2'-aldehydes through thiazolidine, oxime, and hydrazine linkages
-
Zatsepin TS, Stetsenko DA, Arzumanov AA, Romanova EA, Gait MJ, et al. (2002) Synthesis of peptide-oligonucleotide conjugates with single and multiple peptides attached to 2'-aldehydes through thiazolidine, oxime, and hydrazine linkages. Bioconjugate Chem 13: 822-830.
-
(2002)
Bioconjugate Chem
, vol.13
, pp. 822-830
-
-
Zatsepin, T.S.1
Stetsenko, D.A.2
Arzumanov, A.A.3
Romanova, E.A.4
Gait, M.J.5
-
22
-
-
2542452214
-
-
In: Kluwer Academic Publishers, editor. New York, Boston, Dordrecht, London, Moscow
-
Leskovac V (2004) Comprehensive Enzyme Kinetics. In: Kluwer Academic Publishers, editor. New York, Boston, Dordrecht, London, Moscow. 31-49.
-
(2004)
Comprehensive Enzyme Kinetics
, pp. 31-49
-
-
Leskovac, V.1
-
23
-
-
0345448125
-
Repair of abasic sites in DNA
-
Dianov G, Sleeth K, Dianova I, Allinson S, (2003) Repair of abasic sites in DNA. Mutat Res 531: 157-163.
-
(2003)
Mutat Res
, vol.531
, pp. 157-163
-
-
Dianov, G.1
Sleeth, K.2
Dianova, I.3
Allinson, S.4
-
24
-
-
84869005984
-
Insights into the structures of DNA damaged by hydroxyl radical: crystal structures of DNA duplexes containing 5-formyluracil
-
doi: 10.4061/2010/107289
-
Tsunoda M, Sakaue T, Naito S, Sunami T, Abe N, et al. (2010) Insights into the structures of DNA damaged by hydroxyl radical: crystal structures of DNA duplexes containing 5-formyluracil. J Nucleic Acids doi: 10.4061/2010/107289.
-
(2010)
J Nucleic Acids
-
-
Tsunoda, M.1
Sakaue, T.2
Naito, S.3
Sunami, T.4
Abe, N.5
-
25
-
-
34249905486
-
A "moving metal mechanism" for substrate cleavage by the DNA repair endonuclease APE-1
-
Oezguen N, Schein CH, Peddi SR, Power TD, Izumi T, et al. (2007) A "moving metal mechanism" for substrate cleavage by the DNA repair endonuclease APE-1. Proteins 68: 313-323.
-
(2007)
Proteins
, vol.68
, pp. 313-323
-
-
Oezguen, N.1
Schein, C.H.2
Peddi, S.R.3
Power, T.D.4
Izumi, T.5
-
26
-
-
0035890069
-
XRCC1 coordinates the initial and late stages of DNA abasic site repair through protein-protein interactions
-
Vidal A, Boiteux S, Hickson I, Radicella J, (2001) XRCC1 coordinates the initial and late stages of DNA abasic site repair through protein-protein interactions. EMBO J 20: 6530-6539.
-
(2001)
EMBO J
, vol.20
, pp. 6530-6539
-
-
Vidal, A.1
Boiteux, S.2
Hickson, I.3
Radicella, J.4
-
27
-
-
0029842307
-
Reconstitution of DNA base excision-repair with purified human proteins: interaction between DNA polymerase beta and the XRCC1 protein
-
Kubota Y, Nash RA, Klungland A, Schär P, Barnes D, et al. (1996) Reconstitution of DNA base excision-repair with purified human proteins: interaction between DNA polymerase beta and the XRCC1 protein. EMBO J 15: 6662-6670.
-
(1996)
EMBO J
, vol.15
, pp. 6662-6670
-
-
Kubota, Y.1
Nash, R.A.2
Klungland, A.3
Schär, P.4
Barnes, D.5
-
28
-
-
34250777353
-
Ab initio base-pairing energies of an oxidized thymine product, 5-formyluracil, with standard DNA bases at the BSSE-free DFT and MP2 theory levels
-
Volk D, Thiviyanathan V, Somasunderam A, Gorenstein D, (2007) Ab initio base-pairing energies of an oxidized thymine product, 5-formyluracil, with standard DNA bases at the BSSE-free DFT and MP2 theory levels. Org Biomol Chem 5: 1554-1558.
-
(2007)
Org Biomol Chem
, vol.5
, pp. 1554-1558
-
-
Volk, D.1
Thiviyanathan, V.2
Somasunderam, A.3
Gorenstein, D.4
-
29
-
-
4444337946
-
Human DNA polymerases lambda and beta show different efficiencies of translesion DNA synthesis past abasic sites and alternative mechanisms for frameshift generation
-
Blanca G, Villani G, Shevelev I, Ramadan K, Spadari S, et al. (2004) Human DNA polymerases lambda and beta show different efficiencies of translesion DNA synthesis past abasic sites and alternative mechanisms for frameshift generation. Biochemistry 43: 11605-11615.
-
(2004)
Biochemistry
, vol.43
, pp. 11605-11615
-
-
Blanca, G.1
Villani, G.2
Shevelev, I.3
Ramadan, K.4
Spadari, S.5
-
30
-
-
0022577219
-
The base substitution fidelity of eukaryotic DNA polymerases. Mispairing frequencies, site preferences, insertion preferences, and base substitution by dislocation
-
Kunkel TA, Alexander SJ, (1986) The base substitution fidelity of eukaryotic DNA polymerases. Mispairing frequencies, site preferences, insertion preferences, and base substitution by dislocation. J Biol Chem 261: 160-166.
-
(1986)
J Biol Chem
, vol.261
, pp. 160-166
-
-
Kunkel, T.A.1
Alexander, S.J.2
-
31
-
-
44449088925
-
Incorrect nucleotide insertion at the active site of a G:A mismatch catalyzed by DNA polymerase beta
-
Lin P, Batra VK, Pedersen LC, Beard WA, Wilson SH, et al. (2008) Incorrect nucleotide insertion at the active site of a G:A mismatch catalyzed by DNA polymerase beta. Proc Natl Acad Sci U S A 105: 5670-5674.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 5670-5674
-
-
Lin, P.1
Batra, V.K.2
Pedersen, L.C.3
Beard, W.A.4
Wilson, S.H.5
-
32
-
-
14844338678
-
Human base excision repair enzymes apurinic/apyrimidinic endonuclease1 (APE1), DNA polymerase beta and poly(ADP-ribose) polymerase 1: interplay between strand-displacement DNA synthesis and proofreading exonuclease activity
-
Sukhanova M, Khodyreva S, Lebedeva N, Prasad R, Wilson S, et al. (2005) Human base excision repair enzymes apurinic/apyrimidinic endonuclease1 (APE1), DNA polymerase beta and poly(ADP-ribose) polymerase 1: interplay between strand-displacement DNA synthesis and proofreading exonuclease activity. Nucleic Acids Res 33: 1222-1229.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1222-1229
-
-
Sukhanova, M.1
Khodyreva, S.2
Lebedeva, N.3
Prasad, R.4
Wilson, S.5
-
33
-
-
0037163025
-
Direct interaction between mammalian DNA polymerase beta and proliferating cell nuclear antigen
-
Kedar P, Kim S, Robertson A, Hou E, Prasad R, et al. (2002) Direct interaction between mammalian DNA polymerase beta and proliferating cell nuclear antigen. J Biol Chem 277: 31115-311123.
-
(2002)
J Biol Chem
, vol.277
, pp. 31115-311123
-
-
Kedar, P.1
Kim, S.2
Robertson, A.3
Hou, E.4
Prasad, R.5
-
34
-
-
21644441458
-
DNA polymerase lambda directly binds to proliferating cell nuclear antigen through its confined C-terminal region
-
Shimazaki N, Yazaki T, Kubota T, Sato A, Nakamura A, et al. (2005) DNA polymerase lambda directly binds to proliferating cell nuclear antigen through its confined C-terminal region. Genes Cells 10: 705-715.
-
(2005)
Genes Cells
, vol.10
, pp. 705-715
-
-
Shimazaki, N.1
Yazaki, T.2
Kubota, T.3
Sato, A.4
Nakamura, A.5
-
35
-
-
34249870372
-
8-oxo-guanine bypass by human DNA polymerases in the presence of auxiliary proteins
-
Maga G, Villani G, Crespan E, Wimmer U, Ferrari E, et al. (2007) 8-oxo-guanine bypass by human DNA polymerases in the presence of auxiliary proteins. Nature 447: 606-608.
-
(2007)
Nature
, vol.447
, pp. 606-608
-
-
Maga, G.1
Villani, G.2
Crespan, E.3
Wimmer, U.4
Ferrari, E.5
-
36
-
-
77953092280
-
DNA polymerases beta and lambda bypass thymine glycol in gapped DNA structures
-
Belousova E, Maga G, Fan Y, Kubareva E, Romanova E, et al. (2010) DNA polymerases beta and lambda bypass thymine glycol in gapped DNA structures. Biochemistry 49: 4695-4704.
-
(2010)
Biochemistry
, vol.49
, pp. 4695-4704
-
-
Belousova, E.1
Maga, G.2
Fan, Y.3
Kubareva, E.4
Romanova, E.5
-
37
-
-
43349085867
-
Human abasic endonuclease action on multilesion abasic clusters: implications for radiation-induced biological damage
-
Paap B, Wilson DM III, Sutherland BM, (2008) Human abasic endonuclease action on multilesion abasic clusters: implications for radiation-induced biological damage. Sutherland Nucleic Acids Res 36: 2717-2727.
-
(2008)
Sutherland Nucleic Acids Res
, vol.36
, pp. 2717-2727
-
-
Paap, B.1
Wilson III, D.M.2
Sutherland, B.M.3
|