-
1
-
-
0035832365
-
Mutations induced by 5-formyl-2′-deoxyuridine in Escherichia coli include base substitutions that can arise from mispairs of 5-formyluracil with guanine, cytosine and thymine
-
Ånensen H, Provan F, Lian AT, Reinertsen S-HHS, Ueno Y, Matsuda A, Seeberg E, Bjelland S. 2001. Mutations induced by 5-formyl-2′-deoxyuridine in Escherichia coli include base substitutions that can arise from mispairs of 5-formyluracil with guanine, cytosine and thymine. Mutation Research 476:99-107.
-
(2001)
Mutation Research
, vol.476
, pp. 99-107
-
-
Ånensen, H.1
Provan, F.2
Lian, A.T.3
Reinertsen, S.-H.H.S.4
Ueno, Y.5
Matsuda, A.6
Seeberg, E.7
Bjelland, S.8
-
3
-
-
0028045942
-
DNA glycosylase activities for thymine residues oxidized in the methyl group are functions of the AlkA enzyme in Escherichia coli
-
Bjelland S, Birkeland N-K, Benneche T, Volden G, Seeberg E. 1994. DNA glycosylase activities for thymine residues oxidized in the methyl group are functions of the AlkA enzyme in Escherichia coli. Journal of Biological Chemistry 269: 30489-30495.
-
(1994)
Journal of Biological Chemistry
, vol.269
, pp. 30489-30495
-
-
Bjelland, S.1
Birkeland, N.-K.2
Benneche, T.3
Volden, G.4
Seeberg, E.5
-
4
-
-
0028844785
-
Oxidation of thymine to 5-formyluracil in DNA: Mechanisms of formation, structural implications, and base excision by human cell free extracts
-
Bjelland S, Eide L, Time RW, Stote R, Eftedal I, Volden G, Seeberg E. 1995. Oxidation of thymine to 5-formyluracil in DNA: Mechanisms of formation, structural implications, and base excision by human cell free extracts. Biochemistry 34:14758-14764.
-
(1995)
Biochemistry
, vol.34
, pp. 14758-14764
-
-
Bjelland, S.1
Eide, L.2
Time, R.W.3
Stote, R.4
Eftedal, I.5
Volden, G.6
Seeberg, E.7
-
5
-
-
0344586043
-
Mutagenicity, toxicity and repair of DNA base damage induced by oxidation
-
Bjelland S, Seeberg E. 2003. Mutagenicity, toxicity and repair of DNA base damage induced by oxidation. Mutation Research 531:37-80.
-
(2003)
Mutation Research
, vol.531
, pp. 37-80
-
-
Bjelland, S.1
Seeberg, E.2
-
6
-
-
0030703177
-
Opposite base-dependent reactions of a human base excision repair enzyme on DNA containing 7,8-dihydro-8-oxoguanine and abasic sites
-
Bjørås M, Luna L, Johnsen B, Hoff E, Haug T, Rognes T, Seeberg E. 1997. Opposite base-dependent reactions of a human base excision repair enzyme on DNA containing 7,8-dihydro-8-oxoguanine and abasic sites. EMBO Journal 16: 6314-6322.
-
(1997)
EMBO Journal
, vol.16
, pp. 6314-6322
-
-
Bjørås, M.1
Luna, L.2
Johnsen, B.3
Hoff, E.4
Haug, T.5
Rognes, T.6
Seeberg, E.7
-
8
-
-
0032531758
-
The mutations induced by oxidatively damaged nucleotides, 5-formyl-dUTP and 5-hydroxy-dCTP
-
Nucleic Acids Research
-
Fujikawa K, Kamiya H, Kasai H. 1998. The mutations induced by oxidatively damaged nucleotides, 5-formyl-dUTP and 5-hydroxy-dCTP, in Escherichia coli. Nucleic Acids Research 26:4582-4587.
-
(1998)
Escherichia coli
, vol.26
, pp. 4582-4587
-
-
Fujikawa, K.1
Kamiya, H.2
Kasai, H.3
-
9
-
-
0032584384
-
Isolation of MutSβ from human cells and comparison of the mismatch repair specificities of MutSβ and MutSα
-
Genschel J, Littman SJ, Drummond JT, Modrich P. 1998. Isolation of MutSβ from human cells and comparison of the mismatch repair specificities of MutSβ and MutSα. Journal of Biological Chemistry 273:19895-19901.
-
(1998)
Journal of Biological Chemistry
, vol.273
, pp. 19895-19901
-
-
Genschel, J.1
Littman, S.J.2
Drummond, J.T.3
Modrich, P.4
-
10
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
Guex N, Peitsch MC. 1997. SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling. Electrophoresis 18:2714-2723.
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
12
-
-
33846259404
-
Derivatization with Girard reagent T combined with LC-MS/MS for the sensitive detection of 5-formyl-2′-deoxyuridine in cellular DNA
-
Hong H, Wang Y. 2007. Derivatization with Girard reagent T combined with LC-MS/MS for the sensitive detection of 5-formyl-2′-deoxyuridine in cellular DNA. Analytical Chemistry 79:322-326.
-
(2007)
Analytical Chemistry
, vol.79
, pp. 322-326
-
-
Hong, H.1
Wang, Y.2
-
13
-
-
0035863859
-
Induction of T → G and T → A transversions by 5-formyluracil in mammalian cells
-
Kamiya H, Murata-Kamiya N, Karino N, Ueno Y, Matsuda A, Kasai H. 2002. Induction of T → G and T → A transversions by 5-formyluracil in mammalian cells. Mutation Research 513:213-222.
-
(2002)
Mutation Research
, vol.513
, pp. 213-222
-
-
Kamiya, H.1
Murata-Kamiya, N.2
Karino, N.3
Ueno, Y.4
Matsuda, A.5
Kasai, H.6
-
14
-
-
0025220483
-
5-Formyldeoxyuridine: A new type of DNA damage induced by ionizing radiation and its mutagenicity to Salmonella strain TA102
-
Kasai H, Iida A, Yamaizumi Z, Nishimura S, Tanooka H. 1990. 5-Formyldeoxyuridine: a new type of DNA damage induced by ionizing radiation and its mutagenicity to Salmonella strain TA102. Mutation Research 243:249-253.
-
(1990)
Mutation Research
, vol.243
, pp. 249-253
-
-
Kasai, H.1
Iida, A.2
Yamaizumi, Z.3
Nishimura, S.4
Tanooka, H.5
-
15
-
-
1842638748
-
Differential specificity of human and Escherichia coli endonuclease III and VIII homologues for oxidative base lesions
-
Katafuchi A, Nakano T, Masaoka A, Terato H, Iwai S, Hanaoka F, Ide H. 2004. Differential specificity of human and Escherichia coli endonuclease III and VIII homologues for oxidative base lesions. Journal of Biological Chemistry 279: 14464-14471.
-
(2004)
Journal of Biological Chemistry
, vol.279
, pp. 14464-14471
-
-
Katafuchi, A.1
Nakano, T.2
Masaoka, A.3
Terato, H.4
Iwai, S.5
Hanaoka, F.6
Ide, H.7
-
16
-
-
18644363009
-
hUNG2 is the major repair enzyme for removal of uracil from U:A matches, U:G mismatches, and U in single-stranded DNA, with hSMUG1 as a broad specificity backup
-
Kavli B, Sundheim O, Akbari M, Otterlei M, Nilsen H, Skorpen F, Aas PA, Hagen L, Krokan HE, Slupphaug G. 2002. hUNG2 is the major repair enzyme for removal of uracil from U:A matches, U:G mismatches, and U in single-stranded DNA, with hSMUG1 as a broad specificity backup. Journal of Biological Chemistry 277:39926-39936.
-
(2002)
Journal of Biological Chemistry
, vol.277
, pp. 39926-39936
-
-
Kavli, B.1
Sundheim, O.2
Akbari, M.3
Otterlei, M.4
Nilsen, H.5
Skorpen, F.6
Aas, P.A.7
Hagen, L.8
Krokan, H.E.9
Slupphaug, G.10
-
17
-
-
1542267787
-
Nucleotide excision repair of 5-formyluracil in vitro is enhanced by the presence of mismatched bases
-
Kino K, Shimizu Y, Sugasawa K, Sugiyama H, Hanaoka F. 2004. Nucleotide excision repair of 5-formyluracil in vitro is enhanced by the presence of mismatched bases. Biochemistry 43:2682-2687.
-
(2004)
Biochemistry
, vol.43
, pp. 2682-2687
-
-
Kino, K.1
Shimizu, Y.2
Sugasawa, K.3
Sugiyama, H.4
Hanaoka, F.5
-
18
-
-
34247269030
-
3-methylcytosine from DNA
-
3-methylcytosine from DNA. EMBO Journal 26:2206-2217.
-
(2007)
EMBO Journal
, vol.26
, pp. 2206-2217
-
-
Leiros, I.1
Nabong, M.P.2
Grøsvik, K.3
Ringvoll, J.4
Haugland, G.T.5
Uldal, L.6
Reite, K.7
Olsbu, I.K.8
Knævelsrud, I.9
Moe, E.10
Andersen, O.A.11
Birkeland, N.-K.12
Ruoff, P.13
Klungland, A.14
Bjelland, S.15
-
19
-
-
0033520969
-
Quality control by DNA repair
-
Lindahl T, Wood RD. 1999. Quality control by DNA repair. Science 286:1897-1905.
-
(1999)
Science
, vol.286
, pp. 1897-1905
-
-
Lindahl, T.1
Wood, R.D.2
-
20
-
-
0037415368
-
Repair of the mutagenic DNA oxidation product, 5-formyluracil
-
Liu P, Burdzy A, Sowers LC. 2003. Repair of the mutagenic DNA oxidation product, 5-formyluracil. DNA Repair 2:199-210.
-
(2003)
DNA Repair
, vol.2
, pp. 199-210
-
-
Liu, P.1
Burdzy, A.2
Sowers, L.C.3
-
21
-
-
0037509930
-
Mammalian 5-formyluracil-DNA glycosylase. 2. Role of SMUG1 uracil-DNA glycosylase in repair of 5-formyluracil and other oxidized and deaminated base lesions
-
Masaoka A, Matsubara M, Hasegawa R, Tanaka T, Kurisu S, Terato H, Ohyama Y, Karino N, Matsuda A, Ide H. 2003. Mammalian 5-formyluracil-DNA glycosylase. 2. Role of SMUG1 uracil-DNA glycosylase in repair of 5-formyluracil and other oxidized and deaminated base lesions. Biochemistry 42:5003-5012.
-
(2003)
Biochemistry
, vol.42
, pp. 5003-5012
-
-
Masaoka, A.1
Matsubara, M.2
Hasegawa, R.3
Tanaka, T.4
Kurisu, S.5
Terato, H.6
Ohyama, Y.7
Karino, N.8
Matsuda, A.9
Ide, H.10
-
22
-
-
0033609930
-
Enzymatic repair of 5-formyluracil. I. Excision of 5-formyluracil site-specifically incorporated into oligonucleo-tide substrates by AlkA protein (Escherichia coli 3-methylade-nine DNA glycosylase II)
-
Masaoka A, Terato H, Kobayashi M, Honsho A, Ohyama Y, Ide H. 1999. Enzymatic repair of 5-formyluracil. I. Excision of 5-formyluracil site-specifically incorporated into oligonucleo-tide substrates by AlkA protein (Escherichia coli 3-methylade-nine DNA glycosylase II). Journal of Biological Chemistry 274:25136-25143.
-
(1999)
Journal of Biological Chemistry
, vol.274
, pp. 25136-25143
-
-
Masaoka, A.1
Terato, H.2
Kobayashi, M.3
Honsho, A.4
Ohyama, Y.5
Ide, H.6
-
23
-
-
0038185257
-
Mammalian 5-formyluracil-DNA glycosylase. 1. Identification and characterization of a novel activity that releases 5-formyluracil from DNA
-
Matsubara M, Masaoka A, Tanaka T, Miyano T, Kato N, Terato H, Ohyama Y, Iwai S, Ide H. 2003. Mammalian 5-formyluracil-DNA glycosylase. 1. Identification and characterization of a novel activity that releases 5-formyluracil from DNA. Biochemistry 42:4993-5002.
-
(2003)
Biochemistry
, vol.42
, pp. 4993-5002
-
-
Matsubara, M.1
Masaoka, A.2
Tanaka, T.3
Miyano, T.4
Kato, N.5
Terato, H.6
Ohyama, Y.7
Iwai, S.8
Ide, H.9
-
24
-
-
5144220241
-
Mutational analysis of the damage-recognition and catalytic mechanism of human SMUG1 DNA glycosylase
-
Matsubara M, Tanaka T, Terato H, Ohmae E, Izumi S, Katayanagi K, Ide H. 2004. Mutational analysis of the damage-recognition and catalytic mechanism of human SMUG1 DNA glycosylase. Nucleic Acids Research 32: 5291-5302.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 5291-5302
-
-
Matsubara, M.1
Tanaka, T.2
Terato, H.3
Ohmae, E.4
Izumi, S.5
Katayanagi, K.6
Ide, H.7
-
26
-
-
0036682264
-
Identification of 5-formyluracil DNA glycosylase activity of human hNTH1 protein
-
Miyabe I, Zhang Q-M, Kino K, Sugiyama H, Takao M, Yasui A, Yonei S. 2002. Identification of 5-formyluracil DNA glycosylase activity of human hNTH1 protein. Nucleic Acids Research 30:3443-3448.
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 3443-3448
-
-
Miyabe, I.1
Zhang, Q.-M.2
Kino, K.3
Sugiyama, H.4
Takao, M.5
Yasui, A.6
Yonei, S.7
-
27
-
-
0027967842
-
Nucleosides and nucleotides. 131. Synthesis and properties of oligonucleotides containing 5-formyl-2′-deoxyuridine
-
Ono A, Okamoto T, Inada M, Nara H, Matsuda A. 1994. Nucleosides and nucleotides. 131. Synthesis and properties of oligonucleotides containing 5-formyl-2′-deoxyuridine. Chemical & Pharmaceutical Bulletin (Tokyo) 42: 2231-2237.
-
(1994)
Chemical & Pharmaceutical Bulletin (Tokyo)
, vol.42
, pp. 2231-2237
-
-
Ono, A.1
Okamoto, T.2
Inada, M.3
Nara, H.4
Matsuda, A.5
-
28
-
-
34547645005
-
Uracil-DNA glycosylases SMUG1 and UNG2 coordinate the initial steps of base excision repair by distinct mechanisms
-
Pettersen HS, Sundheim O, Gilljam KM, Slupphaug G, Krokan HE, Kavli B. 2007. Uracil-DNA glycosylases SMUG1 and UNG2 coordinate the initial steps of base excision repair by distinct mechanisms. Nucleic Acids Research 35: 3879-3892.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 3879-3892
-
-
Pettersen, H.S.1
Sundheim, O.2
Gilljam, K.M.3
Slupphaug, G.4
Krokan, H.E.5
Kavli, B.6
-
29
-
-
0036249832
-
Formation of modified DNA bases in cells exposed either to gamma radiation or to high-LET particles
-
Pouget J-P, Frelon S, Ravanat J-L, Testard I, Odin F, Cadet J. 2002. Formation of modified DNA bases in cells exposed either to gamma radiation or to high-LET particles. Radiation Research 157:589-595.
-
(2002)
Radiation Research
, vol.157
, pp. 589-595
-
-
Pouget, J.-P.1
Frelon, S.2
Ravanat, J.-L.3
Testard, I.4
Odin, F.5
Cadet, J.6
-
30
-
-
0344585940
-
The interacting pathways for prevention and repair of oxidative DNA damage
-
Slupphaug G, Kavli B, Krokan HE. 2003. The interacting pathways for prevention and repair of oxidative DNA damage. Mutation Research 531:231-251.
-
(2003)
Mutation Research
, vol.531
, pp. 231-251
-
-
Slupphaug, G.1
Kavli, B.2
Krokan, H.E.3
-
31
-
-
0037187794
-
Water mediated Dickerson-Drew-type crystal of DNA dodecamer containing 2′-deoxy-5-formyluridine
-
Tsunoda M, Kondo J, Karino N, Ueno Y, Matsuda A, Takenaka A. 2002. Water mediated Dickerson-Drew-type crystal of DNA dodecamer containing 2′-deoxy-5-formyluridine. Biophysical Chemistry 95:227-233.
-
(2002)
Biophysical Chemistry
, vol.95
, pp. 227-233
-
-
Tsunoda, M.1
Kondo, J.2
Karino, N.3
Ueno, Y.4
Matsuda, A.5
Takenaka, A.6
-
32
-
-
0043205931
-
X-ray analyses of DNA dodecamers containing 2′-deoxy-5-formyluridine
-
Tsunoda M, Sakaue T, Naito S, Sunami T, Karino N, Ueno Y, Matsuda A, Takénaka A. 2001. X-ray analyses of DNA dodecamers containing 2′-deoxy-5-formyluridine. Nucleic Acids Research (Suppl. 1):279-280.
-
(2001)
Nucleic Acids Research
, Issue.SUPPL. 1
, pp. 279-280
-
-
Tsunoda, M.1
Sakaue, T.2
Naito, S.3
Sunami, T.4
Karino, N.5
Ueno, Y.6
Matsuda, A.7
Takénaka, A.8
-
33
-
-
34250777353
-
Ab initio base-pairing energies of an oxidized thymine product, 5-formyluracil, with standard DNA bases at the BSSE-free DFT and MP2 theory levels
-
Volk DE, Thiviyanathan V, Somasunderam A, Gorenstein DG. 2007. Ab initio base-pairing energies of an oxidized thymine product, 5-formyluracil, with standard DNA bases at the BSSE-free DFT and MP2 theory levels. Organic & Biomolecular Chemistry 5:1554-1558.
-
(2007)
Organic & Biomolecular Chemistry
, vol.5
, pp. 1554-1558
-
-
Volk, D.E.1
Thiviyanathan, V.2
Somasunderam, A.3
Gorenstein, D.G.4
-
34
-
-
0038771139
-
Structure and specificity of the vertebrate antimutator uracil-DNA glycosylase SMUG1
-
Wibley JEA, Waters TR, Haushalter K, Verdine GL, Pearl LH. 2003. Structure and specificity of the vertebrate antimutator uracil-DNA glycosylase SMUG1. Molecular Cell 11: 1647-1659.
-
(2003)
Molecular Cell
, vol.11
, pp. 1647-1659
-
-
Wibley, J.E.A.1
Waters, T.R.2
Haushalter, K.3
Verdine, G.L.4
Pearl, L.H.5
-
35
-
-
0030791720
-
Replication of DNA templates containing 5-formyluracil, a major oxidative lesion of thymine in DNA
-
Zhang Q-M, Sugiyama H, Miyabe I, Matsuda S, Saito I, Yonei S. 1997. Replication of DNA templates containing 5-formyluracil, a major oxidative lesion of thymine in DNA. Nucleic Acids Research 25:3969-3973.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 3969-3973
-
-
Zhang, Q.-M.1
Sugiyama, H.2
Miyabe, I.3
Matsuda, S.4
Saito, I.5
Yonei, S.6
-
36
-
-
7944227532
-
DNA glycosylase activities for thymine residues oxidized in the methyl group are functions of the hNEIL1 and hNTH1 enzymes in human cells
-
Zhang Q-M, Yonekura S-I, Takao M, Yasui A, Sugiyama H, Yonei S. 2005. DNA glycosylase activities for thymine residues oxidized in the methyl group are functions of the hNEIL1 and hNTH1 enzymes in human cells. DNA Repair 4:71-79.
-
(2005)
DNA Repair
, vol.4
, pp. 71-79
-
-
Zhang, Q.-M.1
Yonekura, S.-I.2
Takao, M.3
Yasui, A.4
Sugiyama, H.5
Yonei, S.6
|