-
1
-
-
0021668356
-
Effects of alcohols on micro-organisms
-
Ingram LO, Buttke TM (1984) Effects of alcohols on micro-organisms. Adv Microb Physiol 25:253-300
-
(1984)
Adv Microb Physiol
, vol.25
, pp. 253-300
-
-
Ingram, L.O.1
Buttke, T.M.2
-
2
-
-
77955411560
-
Elucidating mechanisms of solvent toxicity in ethanologenic Escherichia coli
-
Trinh CT, Huffer S, Clark ME, Blanch HW, Clark DS (2010) Elucidating mechanisms of solvent toxicity in ethanologenic Escherichia coli. Biotechnol Bioeng 106(5):721-730
-
(2010)
Biotechnol Bioeng
, vol.106
, Issue.5
, pp. 721-730
-
-
Trinh, C.T.1
Huffer, S.2
Clark, M.E.3
Blanch, H.W.4
Clark, D.S.5
-
3
-
-
0019845574
-
Inhibition of succinate production during yeast fermentation by de-energization of the plasma membrane
-
Duro AF, Serrano R (1981) Inhibition of succinate production during yeast fermentation by de-energization of the plasma membrane. Current Microbiology 6:111-113
-
(1981)
Current Microbiology
, vol.6
, pp. 111-113
-
-
Duro, A.F.1
Serrano, R.2
-
4
-
-
36249005491
-
Succinate inhibition of alpha-ketoglutaratedependent enzymes in a yeast model of paraganglioma
-
Smith EH, Janknecht R, Maher LJ 3rd (2007) Succinate inhibition of alpha-ketoglutaratedependent enzymes in a yeast model of paraganglioma. Hum Mol Genet 16(24):3136-3148
-
(2007)
Hum Mol Genet
, vol.16
, Issue.24
, pp. 3136-3148
-
-
Smith, E.H.1
Janknecht, R.2
Maher III, L.J.3
-
5
-
-
79960975845
-
Transcriptional analysis of Lactobacillus brevis to N-butanol and ferulic acid stress responses
-
Winkler J, Kao KC (2011) Transcriptional analysis of Lactobacillus brevis to N-butanol and ferulic acid stress responses. PLoS One 6 (8):e21438
-
(2011)
PLoS One
, vol.6
, Issue.8
-
-
Winkler, J.1
Kao, K.C.2
-
6
-
-
84865403230
-
A transcriptional study of acidogenic chemostat cells of Clostridium acetobutylicum-Cellular behavior in adaptation to n-butanol
-
Schwarz KM, Kuit W, Grimmler C, Ehrenreich A, Kengen SW (2012) A transcriptional study of acidogenic chemostat cells of Clostridium acetobutylicum-Cellular behavior in adaptation to n-butanol. J Biotechnol 161(3):366-77
-
(2012)
J Biotechnol
, vol.161
, Issue.3
, pp. 366-377
-
-
Schwarz, K.M.1
Kuit, W.2
Grimmler, C.3
Ehrenreich, A.4
Kengen, S.W.5
-
7
-
-
34548716431
-
Development of ethanologenic bacteria
-
Jarboe LR, Grabar TB, Yomano LP, Shanmugan KT, Ingram LO (2007) Development of ethanologenic bacteria. Adv Biochem Eng Biotechnol 108:237-261
-
(2007)
Adv Biochem Eng Biotechnol
, vol.108
, pp. 237-261
-
-
Jarboe, L.R.1
Grabar, T.B.2
Yomano, L.P.3
Shanmugan, K.T.4
Ingram, L.O.5
-
8
-
-
38849156399
-
Acid in ionic liquid: An efficient system for hydrolysis of lignocellulose
-
Li C, Wang Q, Zhao ZK (2008) Acid in ionic liquid: an efficient system for hydrolysis of lignocellulose. Green Chemistry 10:177-182
-
(2008)
Green Chemistry
, vol.10
, pp. 177-182
-
-
Li, C.1
Wang, Q.2
Zhao, Z.K.3
-
10
-
-
0033395572
-
Effect of organic acids on the growth and fermentation of ethanologenic Escherichia coli LY01
-
Zaldivar J, Ingram LO (1999) Effect of organic acids on the growth and fermentation of ethanologenic Escherichia coli LY01. Biotechnol Bioeng 66(4):203-210
-
(1999)
Biotechnol Bioeng
, vol.66
, Issue.4
, pp. 203-210
-
-
Zaldivar, J.1
Ingram, L.O.2
-
11
-
-
0033527357
-
Effect of selected aldehydes on the growth and fermentation of ethanologenic Escherichia coli
-
Zaldivar J, Martinez A, Ingram LO (1999) Effect of selected aldehydes on the growth and fermentation of ethanologenic Escherichia coli. Biotechnol Bioeng 65(1):24-33
-
(1999)
Biotechnol Bioeng
, vol.65
, Issue.1
, pp. 24-33
-
-
Zaldivar, J.1
Martinez, A.2
Ingram, L.O.3
-
12
-
-
70349432292
-
Furfural inhibits growth by limiting sulfur assimilation in ethanologenic Escherichia coli strain LY180
-
Miller EN, Jarboe LR, Turner PC, Pharkya P, Yomano LP, York SW, Ingram LO (2009) Furfural inhibits growth by limiting sulfur assimilation in ethanologenic Escherichia coli strain LY180. Appl Environ Microbiol 75(19): 6132-6141
-
(2009)
Appl Environ Microbiol
, vol.75
, Issue.19
, pp. 6132-6141
-
-
Miller, E.N.1
Jarboe, L.R.2
Turner, P.C.3
Pharkya, P.4
Yomano, L.P.5
York, S.W.6
Ingram, L.O.7
-
13
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10(3):R25
-
(2009)
Genome Biol
, vol.10
, Issue.3
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
14
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25(14):1754-1760
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
15
-
-
68549104404
-
The sequence alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Durbin R (2009) The sequence alignment/Map format and SAMtools. Bioinformatics 25(16):2078-2079
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Durbin, R.7
-
16
-
-
72849144434
-
Sequencing technologies- The next generation
-
Metzker ML (2010) Sequencing technologies- The next generation. Nat Rev Genet 11(1):31-46
-
(2010)
Nat Rev Genet
, vol.11
, Issue.1
, pp. 31-46
-
-
Metzker, M.L.1
-
17
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon D, Abajian C, Green P (1998) Consed: a graphical tool for sequence finishing. Genome Res 8(3):195-202
-
(1998)
Genome Res
, vol.8
, Issue.3
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
18
-
-
67649624927
-
Silencing of NADPH-dependent oxidoreductase genes (yqhD and dkgA) in furfural-resistant ethanologenic Escherichia coli
-
Miller EN, Jarboe LR, Yomano LP, York SW, Shanmugam KT, Ingram LO (2009) Silencing of NADPH-dependent oxidoreductase genes (yqhD and dkgA) in furfural-resistant ethanologenic Escherichia coli. Appl Environ Microbiol 75(13):4315-4323
-
(2009)
Appl Environ Microbiol
, vol.75
, Issue.13
, pp. 4315-4323
-
-
Miller, E.N.1
Jarboe, L.R.2
Yomano, L.P.3
York, S.W.4
Shanmugam, K.T.5
Ingram, L.O.6
-
19
-
-
78651093186
-
YqhD: A broad-substrate range aldehyde reductase with various applications in production of biorenewable fuels and chemicals
-
Jarboe LR (2011) YqhD: a broad-substrate range aldehyde reductase with various applications in production of biorenewable fuels and chemicals. Appl Microbiol Biotechnol 89 (2):249-257
-
(2011)
Appl Microbiol Biotechnol
, vol.89
, Issue.2
, pp. 249-257
-
-
Jarboe, L.R.1
-
20
-
-
75949108066
-
Galaxy: A web-based genome analysis tool for experimentalists
-
Unit 19.10
-
Blankenberg D, Von Kuster G, Coraor N, Ananda G, Lazarus R, Mangan M, Taylor J (2010) Galaxy: a web-based genome analysis tool for experimentalists. Curr Protoc Mol Biol Chapter 19(Unit 19.10):1-21
-
(2010)
Curr Protoc Mol Biol Chapter
, vol.19
, pp. 1-21
-
-
Blankenberg, D.1
Von Kuster, G.2
Coraor, N.3
Ananda, G.4
Lazarus, R.5
Mangan, M.6
Taylor, J.7
-
21
-
-
25844449770
-
Galaxy: A platform for interactive large-scale genome analysis
-
Giardine B, Riemer C,Hardison RC, Burhans R, Elnitski L, Shah P,Nekrutenko A (2005)Galaxy: a platform for interactive large-scale genome analysis. Genome Res 15(10):1451-1455
-
(2005)
Genome Res
, vol.15
, Issue.10
, pp. 1451-1455
-
-
Giardine, B.1
Riemer, C.2
Hardison, R.C.3
Burhans, R.4
Elnitski, L.5
Shah, P.6
Nekrutenko, A.7
-
22
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Goecks J, Nekrutenko A, Taylor J (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 11(8):R86
-
(2010)
Genome Biol
, vol.11
, Issue.8
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
24
-
-
79958795493
-
-
Computer program distributed by the author, retrieved from
-
Gordon A (2012) FASTX-Toolkit. Computer program distributed by the author, retrieved from http://hannonlab.cshl.edu/fastx-toolkit/index.html
-
(2012)
FASTX-Toolkit
-
-
Gordon, A.1
-
25
-
-
66449136667
-
ABySS: A parallel assembler for short read sequence data
-
Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I (2009) ABySS: a parallel assembler for short read sequence data. Genome Res 19(6):1117-1123
-
(2009)
Genome Res
, vol.19
, Issue.6
, pp. 1117-1123
-
-
Simpson, J.T.1
Wong, K.2
Jackman, S.D.3
Schein, J.E.4
Jones, S.J.5
Birol, I.6
-
26
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18(5):821-829
-
(2008)
Genome Res
, vol.18
, Issue.5
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
27
-
-
74049108922
-
BLAST+: Architecture and applications
-
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL (2009) BLAST+: architecture and applications. BMC Bioinformatics 10:421
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
Madden, T.L.7
-
28
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132:365-386
-
(2000)
Methods Mol Biol
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
29
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing B, Green P (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8(3):186-194
-
(1998)
Genome Res
, vol.8
, Issue.3
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
30
-
-
0031955518
-
Base-calling of automated sequencer traces using phred.I. Accuracy assessment
-
Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8(3):175-185
-
(1998)
Genome Res
, vol.8
, Issue.3
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
|