-
1
-
-
70349136284
-
2-D PAGE and MS analysis of proteins from formalin-fixed, paraffin-embedded tissues
-
19718685 10.1002/pmic.200900010 1:CAS:528:DC%2BD1MXhtFarsbnE
-
Addis MF, Tanca A, Pagnozzi D, Rocca S, Uzzau S (2009) 2-D PAGE and MS analysis of proteins from formalin-fixed, paraffin-embedded tissues. Proteomics 9(18):4329-4339
-
(2009)
Proteomics
, vol.9
, Issue.18
, pp. 4329-4339
-
-
Addis, M.F.1
Tanca, A.2
Pagnozzi, D.3
Rocca, S.4
Uzzau, S.5
-
2
-
-
0037390383
-
Evaluation of ethanol-fixed, paraffin-embedded tissues for proteomic applications
-
12687609 10.1002/pmic.200390056 1:CAS:528:DC%2BD3sXjtVaisrg%3D
-
Ahram M, Flaig MJ, Gillespie JW, Duray PH, Linehan WM, Ornstein DK, Niu S, Zhao Y, Petricoin EF III, Emmert-Buck MR (2003) Evaluation of ethanol-fixed, paraffin-embedded tissues for proteomic applications. Proteomics 3(4):413-421
-
(2003)
Proteomics
, vol.3
, Issue.4
, pp. 413-421
-
-
Ahram, M.1
Flaig, M.J.2
Gillespie, J.W.3
Duray, P.H.4
Linehan, W.M.5
Ornstein, D.K.6
Niu, S.7
Zhao, Y.8
Petricoin Iii, E.F.9
Emmert-Buck, M.R.10
-
3
-
-
77952029990
-
A concise review of mass spectrometry imaging
-
20223463 10.1016/j.chroma.2010.01.033 1:CAS:528:DC%2BC3cXmvVWjtbc%3D
-
Amstalden van Hove ER, Smith DF, Heeren RM (2010) A concise review of mass spectrometry imaging. J Chromatogr A 1217(25):3946-3954
-
(2010)
J Chromatogr A
, vol.1217
, Issue.25
, pp. 3946-3954
-
-
Amstalden Van Hove, E.R.1
Smith, D.F.2
Heeren, R.M.3
-
4
-
-
84878665861
-
Matrix-assisted laser desorption ionization imaging mass spectrometry: In situ molecular mapping
-
Angel PM, Caprioli RM (2013) Matrix-assisted laser desorption ionization imaging mass spectrometry: in situ molecular mapping. Biochemistry
-
(2013)
Biochemistry
-
-
Angel, P.M.1
Caprioli, R.M.2
-
5
-
-
77956327955
-
Formalin-fixed paraffin-embedded (FFPE) proteome analysis using gel-free and gel-based proteomics
-
10.1021/pr1004168 20604508 10.1021/pr1004168 1:CAS:528: DC%2BC3cXpt1Cltbo%3D
-
Azimzadeh O, Barjaktarovic Z, Aubele M, Calzada-Wack J, Sarioglu H, Atkinson MJ, Tapio S (2010) Formalin-fixed paraffin-embedded (FFPE) proteome analysis using gel-free and gel-based proteomics. J Proteome Res 9(9):4710-4720. doi: 10.1021/pr1004168
-
(2010)
J Proteome Res
, vol.9
, Issue.9
, pp. 4710-4720
-
-
Azimzadeh, O.1
Barjaktarovic, Z.2
Aubele, M.3
Calzada-Wack, J.4
Sarioglu, H.5
Atkinson, M.J.6
Tapio, S.7
-
6
-
-
34347369278
-
Proteomics analysis of human coronary atherosclerotic plaque: A feasibility study of direct tissue proteomics by liquid chromatography and tandem mass spectrometry
-
17339633 10.1074/mcp.M600259-MCP200 1:CAS:528:DC%2BD2sXnt1CktLw%3D
-
Bagnato C, Thumar J, Mayya V, Hwang SI, Zebroski H, Claffey KP, Haudenschild C, Eng JK, Lundgren DH, Han DK (2007) Proteomics analysis of human coronary atherosclerotic plaque: a feasibility study of direct tissue proteomics by liquid chromatography and tandem mass spectrometry. Mol Cell Proteomics 6(6):1088-1102
-
(2007)
Mol Cell Proteomics
, vol.6
, Issue.6
, pp. 1088-1102
-
-
Bagnato, C.1
Thumar, J.2
Mayya, V.3
Hwang, S.I.4
Zebroski, H.5
Claffey, K.P.6
Haudenschild, C.7
Eng, J.K.8
Lundgren, D.H.9
Han, D.K.10
-
7
-
-
61849114172
-
Evaluation of archival time on shotgun proteomics of formalin-fixed and paraffin-embedded tissues
-
19128014 10.1021/pr800503u 1:CAS:528:DC%2BD1MXislantw%3D%3D
-
Balgley BM, Guo T, Zhao K, Fang X, Tavassoli FA, Lee CS (2009) Evaluation of archival time on shotgun proteomics of formalin-fixed and paraffin-embedded tissues. J Proteome Res 8(2):917-925
-
(2009)
J Proteome Res
, vol.8
, Issue.2
, pp. 917-925
-
-
Balgley, B.M.1
Guo, T.2
Zhao, K.3
Fang, X.4
Tavassoli, F.A.5
Lee, C.S.6
-
8
-
-
79952392534
-
Differential proteomic analysis of late-stage and recurrent breast cancer from formalin-fixed paraffin-embedded tissues
-
21155598 10.1021/pr101073s 1:CAS:528:DC%2BC3MXnvVSlsw%3D%3D
-
Bateman NW, Sun M, Bhargava R, Hood BL, Darfler MM, Kovatich AJ, Hooke JA, Krizman DB, Conrads TP (2011) Differential proteomic analysis of late-stage and recurrent breast cancer from formalin-fixed paraffin-embedded tissues. J Proteome Res 10(3):1323-1332
-
(2011)
J Proteome Res
, vol.10
, Issue.3
, pp. 1323-1332
-
-
Bateman, N.W.1
Sun, M.2
Bhargava, R.3
Hood, B.L.4
Darfler, M.M.5
Kovatich, A.J.6
Hooke, J.A.7
Krizman, D.B.8
Conrads, T.P.9
-
9
-
-
71049185867
-
Extraction of phosphorylated proteins from formalin-fixed cancer cells and tissues
-
10.2174/1874375700802010046 1:CAS:528:DC%2BD1cXlslaqtbs%3D
-
Becker KF, Mack H, Schott C, Hipp S, Rappl A, Piontek G, Hofler H (2008) Extraction of phosphorylated proteins from formalin-fixed cancer cells and tissues. Open Pathol J 2:46-52
-
(2008)
Open Pathol J
, vol.2
, pp. 46-52
-
-
Becker, K.F.1
Mack, H.2
Schott, C.3
Hipp, S.4
Rappl, A.5
Piontek, G.6
Hofler, H.7
-
10
-
-
53449083436
-
Application of a global proteomic approach to archival precursor lesions: Deleted in malignant brain tumors 1 and tissue transglutaminase 2 are upregulated in pancreatic cancer precursors
-
18849643 10.1159/000161012
-
Cheung W, Darfler MM, Alvarez H, Hood BL, Conrads TP, Habbe N, Krizman DB, Mollenhauer J, Feldmann G, Maitra A (2008) Application of a global proteomic approach to archival precursor lesions: deleted in malignant brain tumors 1 and tissue transglutaminase 2 are upregulated in pancreatic cancer precursors. Pancreatology 8(6):608-616
-
(2008)
Pancreatology
, vol.8
, Issue.6
, pp. 608-616
-
-
Cheung, W.1
Darfler, M.M.2
Alvarez, H.3
Hood, B.L.4
Conrads, T.P.5
Habbe, N.6
Krizman, D.B.7
Mollenhauer, J.8
Feldmann, G.9
Maitra, A.10
-
11
-
-
27144554148
-
A nondestructive molecule extraction method allowing morphological and molecular analyses using a single tissue section
-
doi: 10.1038/labinvest.3700337
-
Chu WS, Liang Q, Liu J, Wei MQ, Winters M, Liotta L, Sandberg G, Gong M (2005) A nondestructive molecule extraction method allowing morphological and molecular analyses using a single tissue section. Lab Invest 85(11):1416-1428. doi: 10.1038/labinvest.3700337
-
(2005)
Lab Invest
, vol.85
, Issue.11
, pp. 1416-1428
-
-
Chu, W.S.1
Liang, Q.2
Liu, J.3
Wei, M.Q.4
Winters, M.5
Liotta, L.6
Sandberg, G.7
Gong, M.8
-
12
-
-
35848970035
-
MALDI imaging mass spectrometry: Molecular snapshots of biochemical systems
-
17901873 10.1038/nmeth1094 1:CAS:528:DC%2BD2sXhtV2mtr7F
-
Cornett DS, Reyzer ML, Chaurand P, Caprioli RM (2007) MALDI imaging mass spectrometry: molecular snapshots of biochemical systems. Nat Methods 4(10):828-833
-
(2007)
Nat Methods
, vol.4
, Issue.10
, pp. 828-833
-
-
Cornett, D.S.1
Reyzer, M.L.2
Chaurand, P.3
Caprioli, R.M.4
-
13
-
-
84876299279
-
Proteomic analysis of formalin-fixed paraffin-embedded renal tissue samples by label-free MS: Assessment of overall technical variability and the impact of block age
-
10.1002/prca.201200065
-
Craven RA, Cairns DA, Zougman A, Harnden P, Selby PJ, Banks RE (2012) Proteomic analysis of formalin-fixed paraffin-embedded renal tissue samples by label-free MS: assessment of overall technical variability and the impact of block age. Proteomics Clin Appl. doi: 10.1002/prca.201200065
-
(2012)
Proteomics Clin Appl
-
-
Craven, R.A.1
Cairns, D.A.2
Zougman, A.3
Harnden, P.4
Selby, P.J.5
Banks, R.E.6
-
14
-
-
27144544744
-
Identification of proteins from formalin-fixed paraffin-embedded cells by LC-MS/MS
-
16155593 10.1038/labinvest.3700343 1:CAS:528:DC%2BD2MXhtFahurzI
-
Crockett DK, Lin Z, Vaughn CP, Lim MS, Elenitoba-Johnson KS (2005) Identification of proteins from formalin-fixed paraffin-embedded cells by LC-MS/MS. Lab Invest 85(11):1405-1415
-
(2005)
Lab Invest
, vol.85
, Issue.11
, pp. 1405-1415
-
-
Crockett, D.K.1
Lin, Z.2
Vaughn, C.P.3
Lim, M.S.4
Elenitoba-Johnson, K.S.5
-
15
-
-
53049096977
-
Multiple reaction monitoring of mTRAQ-labeled peptides enables absolute quantification of endogenous levels of a potential cancer marker in cancerous and normal endometrial tissues
-
18630974 10.1021/pr800312m 1:CAS:528:DC%2BD1cXosFKmsbg%3D
-
DeSouza LV, Taylor AM, Li W, Minkoff MS, Romaschin AD, Colgan TJ, Siu KW (2008) Multiple reaction monitoring of mTRAQ-labeled peptides enables absolute quantification of endogenous levels of a potential cancer marker in cancerous and normal endometrial tissues. J Proteome Res 7(8):3525-3534
-
(2008)
J Proteome Res
, vol.7
, Issue.8
, pp. 3525-3534
-
-
Desouza, L.V.1
Taylor, A.M.2
Li, W.3
Minkoff, M.S.4
Romaschin, A.D.5
Colgan, T.J.6
Siu, K.W.7
-
16
-
-
77956108790
-
MTRAQ-based quantification of potential endometrial carcinoma biomarkers from archived formalin-fixed paraffin-embedded tissues
-
20661955 10.1002/pmic.201000082 1:CAS:528:DC%2BC3cXhtV2gsb3E
-
DeSouza LV, Krakovska O, Darfler MM, Krizman DB, Romaschin AD, Colgan TJ, Siu KW (2010) mTRAQ-based quantification of potential endometrial carcinoma biomarkers from archived formalin-fixed paraffin-embedded tissues. Proteomics 10(17):3108-3116
-
(2010)
Proteomics
, vol.10
, Issue.17
, pp. 3108-3116
-
-
Desouza, L.V.1
Krakovska, O.2
Darfler, M.M.3
Krizman, D.B.4
Romaschin, A.D.5
Colgan, T.J.6
Siu, K.W.7
-
17
-
-
66449091490
-
Detergent addition to tryptic digests and ion mobility separation prior to MS/MS improves peptide yield and protein identification for in situ proteomic investigation of frozen and formalin-fixed paraffin-embedded adenocarcinoma tissue sections
-
19405023 10.1002/pmic.200800624 1:CAS:528:DC%2BD1MXmtlOmtLo%3D
-
Djidja MC, Francese S, Loadman PM, Sutton CW, Scriven P, Claude E, Snel MF, Franck J, Salzet M, Clench MR (2009) Detergent addition to tryptic digests and ion mobility separation prior to MS/MS improves peptide yield and protein identification for in situ proteomic investigation of frozen and formalin-fixed paraffin-embedded adenocarcinoma tissue sections. Proteomics 9(10):2750-2763
-
(2009)
Proteomics
, vol.9
, Issue.10
, pp. 2750-2763
-
-
Djidja, M.C.1
Francese, S.2
Loadman, P.M.3
Sutton, C.W.4
Scriven, P.5
Claude, E.6
Snel, M.F.7
Franck, J.8
Salzet, M.9
Clench, M.R.10
-
18
-
-
79958048871
-
Evaluation of formalin-fixed paraffin-embedded tissues in the proteomic analysis of parathyroid glands
-
21651755 10.1186/1477-5956-9-29 1:CAS:528:DC%2BC3MXns1yjsLs%3D
-
Donadio E, Giusti L, Cetani F, Da VY, Ciregia F, Giannaccini G, Pardi E, Saponaro F, Torregrossa L, Basolo F, Marcocci C, Lucacchini A (2011) Evaluation of formalin-fixed paraffin-embedded tissues in the proteomic analysis of parathyroid glands. Proteome Sci 9(1):29
-
(2011)
Proteome Sci
, vol.9
, Issue.1
, pp. 29
-
-
Donadio, E.1
Giusti, L.2
Cetani, F.3
Da, V.Y.4
Ciregia, F.5
Giannaccini, G.6
Pardi, E.7
Saponaro, F.8
Torregrossa, L.9
Basolo, F.10
Marcocci, C.11
Lucacchini, A.12
-
19
-
-
78650087646
-
Elevated pressure improves the extraction and identification of proteins recovered from formalin-fixed, paraffin-embedded tissue surrogates
-
10.1371/journal.pone.0014253 21170380 10.1371/journal.pone.0014253
-
Fowler CB, Chesnick IE, Moore CD, O'Leary TJ, Mason JT (2010) Elevated pressure improves the extraction and identification of proteins recovered from formalin-fixed, paraffin-embedded tissue surrogates. PloS One 5(12):e14253. doi: 10.1371/journal.pone.0014253
-
(2010)
PloS One
, vol.5
, Issue.12
, pp. 14253
-
-
Fowler, C.B.1
Chesnick, I.E.2
Moore, C.D.3
O'Leary, T.J.4
Mason, J.T.5
-
20
-
-
79960350722
-
Protein phosphorylation analysis in archival clinical cancer samples by shotgun and targeted proteomics approaches
-
21617801 10.1039/c1mb05113j 1:CAS:528:DC%2BC3MXoslOqs78%3D
-
Gamez-Pozo A, Sanchez-Navarro I, Calvo E, Diaz E, Miguel-Martin M, Lopez R, Agullo T, Camafeita E, Espinosa E, Lopez JA, Nistal M, Vara JA (2011) Protein phosphorylation analysis in archival clinical cancer samples by shotgun and targeted proteomics approaches. Mol BioSyst 7(8):2368-2374
-
(2011)
Mol BioSyst
, vol.7
, Issue.8
, pp. 2368-2374
-
-
Gamez-Pozo, A.1
Sanchez-Navarro, I.2
Calvo, E.3
Diaz, E.4
Miguel-Martin, M.5
Lopez, R.6
Agullo, T.7
Camafeita, E.8
Espinosa, E.9
Lopez, J.A.10
Nistal, M.11
Vara, J.A.12
-
21
-
-
53549083277
-
Time-dependent evolution of tissue markers by MALDI-MS imaging
-
18712770 10.1002/pmic.200800201 1:CAS:528:DC%2BD1cXht1Sgu7zN
-
Goodwin RJ, Dungworth JC, Cobb SR, Pitt AR (2008) Time-dependent evolution of tissue markers by MALDI-MS imaging. Proteomics 8(18):3801-3808
-
(2008)
Proteomics
, vol.8
, Issue.18
, pp. 3801-3808
-
-
Goodwin, R.J.1
Dungworth, J.C.2
Cobb, S.R.3
Pitt, A.R.4
-
22
-
-
53549111100
-
High-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue microarrays using MALDI imaging mass spectrometry
-
18712763 10.1002/pmic.200800495 1:CAS:528:DC%2BD1cXht1Sgu7%2FI
-
Groseclose MR, Massion PP, Chaurand P, Caprioli RM (2008) High-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue microarrays using MALDI imaging mass spectrometry. Proteomics 8(18):3715-3724
-
(2008)
Proteomics
, vol.8
, Issue.18
, pp. 3715-3724
-
-
Groseclose, M.R.1
Massion, P.P.2
Chaurand, P.3
Caprioli, R.M.4
-
23
-
-
34250840587
-
Proteome analysis of microdissected formalin-fixed and paraffin-embedded tissue specimens
-
17409379 10.1369/jhc.7A7177.2007 1:CAS:528:DC%2BD2sXmvFahu70%3D
-
Guo T, Wang W, Rudnick PA, Song T, Li J, Zhuang Z, Weil RJ, DeVoe DL, Lee CS, Balgley BM (2007) Proteome analysis of microdissected formalin-fixed and paraffin-embedded tissue specimens. J Histochem Cytochem 55(7):763-772
-
(2007)
J Histochem Cytochem
, vol.55
, Issue.7
, pp. 763-772
-
-
Guo, T.1
Wang, W.2
Rudnick, P.A.3
Song, T.4
Li, J.5
Zhuang, Z.6
Weil, R.J.7
Devoe, D.L.8
Lee, C.S.9
Balgley, B.M.10
-
24
-
-
77956314944
-
Citric acid antigen retrieval (CAAR) for tryptic peptide imaging directly on archived formalin-fixed paraffin-embedded tissue
-
20597554 10.1021/pr9011766 1:CAS:528:DC%2BC3cXptlWgtL4%3D
-
Gustafsson JO, Oehler MK, McColl SR, Hoffmann P (2010) Citric acid antigen retrieval (CAAR) for tryptic peptide imaging directly on archived formalin-fixed paraffin-embedded tissue. J Proteome Res 9(9):4315-4328
-
(2010)
J Proteome Res
, vol.9
, Issue.9
, pp. 4315-4328
-
-
Gustafsson, J.O.1
Oehler, M.K.2
McColl, S.R.3
Hoffmann, P.4
-
25
-
-
79959946214
-
Multiple reaction monitoring assay for pre-eclampsia related calcyclin peptides in formalin fixed paraffin embedded placenta
-
Güzel C, Ursem NT, Dekker LJ, Derkx P, Joore J, van DE, Ligtvoet G, Steegers EA, Luider TM (2011) Multiple reaction monitoring assay for pre-eclampsia related calcyclin peptides in formalin fixed paraffin embedded placenta. J Proteome Res 10(7):3274-3282
-
(2011)
J Proteome Res
, vol.10
, Issue.7
, pp. 3274-3282
-
-
Güzel C, U.1
-
26
-
-
57349105253
-
Tissue handling and specimen preparation in surgical pathology: Issues concerning the recovery of nucleic acids from formalin-fixed, paraffin-embedded tissue
-
19061293
-
Hewitt SM, Lewis FA, Cao Y, Conrad RC, Cronin M, Danenberg KD, Goralski TJ, Langmore JP, Raja RG, Williams PM, Palma JF, Warrington JA (2008) Tissue handling and specimen preparation in surgical pathology: issues concerning the recovery of nucleic acids from formalin-fixed, paraffin-embedded tissue. Arch Pathol Lab Med 132(12):1929-1935
-
(2008)
Arch Pathol Lab Med
, vol.132
, Issue.12
, pp. 1929-1935
-
-
Hewitt, S.M.1
Lewis, F.A.2
Cao, Y.3
Conrad, R.C.4
Cronin, M.5
Danenberg, K.D.6
Goralski, T.J.7
Langmore, J.P.8
Raja, R.G.9
Williams, P.M.10
Palma, J.F.11
Warrington, J.A.12
-
27
-
-
28644451439
-
Proteomic analysis of formalin-fixed prostate cancer tissue
-
16091476 10.1074/mcp.M500102-MCP200 1:CAS:528:DC%2BD2MXht1Cgtb%2FO
-
Hood BL, Darfler MM, Guiel TG, Furusato B, Lucas DA, Ringeisen BR, Sesterhenn IA, Conrads TP, Veenstra TD, Krizman DB (2005) Proteomic analysis of formalin-fixed prostate cancer tissue. Mol Cell Proteomics 4(11):1741-1753
-
(2005)
Mol Cell Proteomics
, vol.4
, Issue.11
, pp. 1741-1753
-
-
Hood, B.L.1
Darfler, M.M.2
Guiel, T.G.3
Furusato, B.4
Lucas, D.A.5
Ringeisen, B.R.6
Sesterhenn, I.A.7
Conrads, T.P.8
Veenstra, T.D.9
Krizman, D.B.10
-
28
-
-
84880037648
-
LC/MS-based quantitative proteomic analysis of paraffin-embedded archival melanomas reveals potential proteomic biomarkers associated with metastasis
-
Huang SK, Darfler MM, Nicholl MB, You J, Bemis KG, Tegeler TJ, Wang M, Wery JP, Chong KK, Nguyen L, Scolyer RA, Hoon DS (2009) LC/MS-based quantitative proteomic analysis of paraffin-embedded archival melanomas reveals potential proteomic biomarkers associated with metastasis. PLoSOne 4(2):e4430
-
(2009)
PLoSOne
, vol.4
, Issue.2
, pp. 4430
-
-
Huang, S.K.1
Darfler, M.M.2
Nicholl, M.B.3
You, J.4
Bemis, K.G.5
Tegeler, T.J.6
Wang, M.7
Wery, J.P.8
Chong, K.K.9
Nguyen, L.10
Scolyer, R.A.11
Hoon, D.S.12
-
29
-
-
33846109371
-
Direct cancer tissue proteomics: A method to identify candidate cancer biomarkers from formalin-fixed paraffin-embedded archival tissues
-
16799640 10.1038/sj.onc.1209755 1:CAS:528:DC%2BD2sXhsFOktg%3D%3D
-
Hwang SI, Thumar J, Lundgren DH, Rezaul K, Mayya V, Wu L, Eng J, Wright ME, Han DK (2007) Direct cancer tissue proteomics: a method to identify candidate cancer biomarkers from formalin-fixed paraffin-embedded archival tissues. Oncogene 26(1):65-76
-
(2007)
Oncogene
, vol.26
, Issue.1
, pp. 65-76
-
-
Hwang, S.I.1
Thumar, J.2
Lundgren, D.H.3
Rezaul, K.4
Mayya, V.5
Wu, L.6
Eng, J.7
Wright, M.E.8
Han, D.K.9
-
30
-
-
14444276493
-
Extraction and analysis of diagnostically useful proteins from formalin-fixed, paraffin-embedded tissue sections
-
9487122 10.1177/002215549804600314 1:CAS:528:DyaK1cXhsVKhtbg%3D
-
Ikeda K, Monden T, Kanoh T, Tsujie M, Izawa H, Haba A, Ohnishi T, Sekimoto M, Tomita N, Shiozaki H, Monden M (1998) Extraction and analysis of diagnostically useful proteins from formalin-fixed, paraffin-embedded tissue sections. J Histochem Cytochem 46(3):397-403
-
(1998)
J Histochem Cytochem
, vol.46
, Issue.3
, pp. 397-403
-
-
Ikeda, K.1
Monden, T.2
Kanoh, T.3
Tsujie, M.4
Izawa, H.5
Haba, A.6
Ohnishi, T.7
Sekimoto, M.8
Tomita, N.9
Shiozaki, H.10
Monden, M.11
-
31
-
-
75349102311
-
Quantitative proteomic analysis of formalin fixed paraffin embedded oral HPV lesions from HIV patients
-
19081750 10.2174/1875039700801010040 1:CAS:528:DC%2BD1cXlslegu7g%3D
-
Jain MR, Liu T, Hu J, Darfler M, Fitzhugh V, Rinaggio J, Li H (2008) Quantitative proteomic analysis of formalin fixed paraffin embedded oral HPV lesions from HIV patients. Open Proteomics J 1:40-45
-
(2008)
Open Proteomics J
, vol.1
, pp. 40-45
-
-
Jain, M.R.1
Liu, T.2
Hu, J.3
Darfler, M.4
Fitzhugh, V.5
Rinaggio, J.6
Li, H.7
-
32
-
-
33947572920
-
Development of efficient protein extraction methods for shotgun proteome analysis of formalin-fixed tissues
-
doi 10.1021/pr0605318
-
Jiang X, Jiang X, Feng S, Tian R, Ye M, Zou H (2007) Development of efficient protein extraction methods for shotgun proteome analysis of formalin-fixed tissues. J Proteome Res 6(3):1038-1047. doi 10.1021/pr0605318
-
(2007)
J Proteome Res
, vol.6
, Issue.3
, pp. 1038-1047
-
-
Jiang, X.1
Jiang, X.2
Feng, S.3
Tian, R.4
Ye, M.5
Zou, H.6
-
33
-
-
77950518174
-
Proteomic analysis of laser-microdissected paraffin-embedded tissues: (1) Stage-related protein candidates upon non-metastatic lung adenocarcinoma
-
19948256 10.1016/j.jprot.2009.11.011 1:CAS:528:DC%2BC3cXksFGhu7Y%3D
-
Kawamura T, Nomura M, Tojo H, Fujii K, Hamasaki H, Mikami S, Bando Y, Kato H, Nishimura T (2010) Proteomic analysis of laser-microdissected paraffin-embedded tissues: (1) Stage-related protein candidates upon non-metastatic lung adenocarcinoma. J Proteomics 73(6):1089-1099
-
(2010)
J Proteomics
, vol.73
, Issue.6
, pp. 1089-1099
-
-
Kawamura, T.1
Nomura, M.2
Tojo, H.3
Fujii, K.4
Hamasaki, H.5
Mikami, S.6
Bando, Y.7
Kato, H.8
Nishimura, T.9
-
34
-
-
84865577612
-
Advancing formaldehyde cross-linking towards quantitative proteomic applications
-
22610548 10.1007/s00216-012-6065-9 1:CAS:528:DC%2BC38Xnt1Sls7w%3D
-
Klockenbusch C, O'Hara JE, Kast J (2012) Advancing formaldehyde cross-linking towards quantitative proteomic applications. Anal Bioanal Chem 404(4):1057-1067
-
(2012)
Anal Bioanal Chem
, vol.404
, Issue.4
, pp. 1057-1067
-
-
Klockenbusch, C.1
O'Hara, J.E.2
Kast, J.3
-
35
-
-
79959928424
-
Excavation of a buried treasure-DNA, mRNA, miRNA and protein analysis in formalin fixed, paraffin embedded tissues
-
21472693 1:CAS:528:DC%2BC3MXnsl2hsbo%3D
-
Klopfleisch R, Weiss AT, Gruber AD (2011) Excavation of a buried treasure-DNA, mRNA, miRNA and protein analysis in formalin fixed, paraffin embedded tissues. Histol Histopathol 26(6):797-810
-
(2011)
Histol Histopathol
, vol.26
, Issue.6
, pp. 797-810
-
-
Klopfleisch, R.1
Weiss, A.T.2
Gruber, A.D.3
-
36
-
-
54049090766
-
Selected reaction monitoring for quantitative proteomics: A tutorial
-
18854821 10.1038/msb.2008.61
-
Lange V, Picotti P, Domon B, Aebersold R (2008) Selected reaction monitoring for quantitative proteomics: a tutorial. Mol Syst Biol 4:222
-
(2008)
Mol Syst Biol
, vol.4
, pp. 222
-
-
Lange, V.1
Picotti, P.2
Domon, B.3
Aebersold, R.4
-
37
-
-
84856228044
-
Imaging mass spectrometry - A new and promising method to differentiate Spitz nevi from Spitzoid malignant melanomas
-
22197864 10.1097/DAD.0b013e31823df1e2
-
Lazova R, Seeley EH, Keenan M, Gueorguieva R, Caprioli RM (2012) Imaging mass spectrometry - a new and promising method to differentiate Spitz nevi from Spitzoid malignant melanomas. Am J Dermatopathol 34(1):82-90
-
(2012)
Am J Dermatopathol
, vol.34
, Issue.1
, pp. 82-90
-
-
Lazova, R.1
Seeley, E.H.2
Keenan, M.3
Gueorguieva, R.4
Caprioli, R.M.5
-
38
-
-
34248230245
-
Direct analysis and MALDI imaging of formalin-fixed, paraffin-embedded tissue sections
-
17291023 10.1021/pr060549i 1:CAS:528:DC%2BD2sXhsFWmtrc%3D
-
Lemaire R, Desmons A, Tabet JC, Day R, Salzet M, Fournier I (2007) Direct analysis and MALDI imaging of formalin-fixed, paraffin-embedded tissue sections. J Proteome Res 6(4):1295-1305
-
(2007)
J Proteome Res
, vol.6
, Issue.4
, pp. 1295-1305
-
-
Lemaire, R.1
Desmons, A.2
Tabet, J.C.3
Day, R.4
Salzet, M.5
Fournier, I.6
-
39
-
-
84863230118
-
Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos
-
22188275 10.1021/pr200748h 1:CAS:528:DC%2BC3MXhs1GhsLbI
-
Li Z, Adams RM, Chourey K, Hurst GB, Hettich RL, Pan C (2012) Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos. J Proteome Res 11(3):1582-1590
-
(2012)
J Proteome Res
, vol.11
, Issue.3
, pp. 1582-1590
-
-
Li, Z.1
Adams, R.M.2
Chourey, K.3
Hurst, G.B.4
Hettich, R.L.5
Pan, C.6
-
40
-
-
0033051101
-
Direct analysis of protein complexes using mass spectrometry
-
10404161 10.1038/10890 1:CAS:528:DyaK1MXksFehsLc%3D
-
Link AJ, Eng J, Schieltz DM, Carmack E, Mize GJ, Morris DR, Garvik BM, Yates JR III (1999) Direct analysis of protein complexes using mass spectrometry. Nat Biotechnol 17(7):676-682
-
(1999)
Nat Biotechnol
, vol.17
, Issue.7
, pp. 676-682
-
-
Link, A.J.1
Eng, J.2
Schieltz, D.M.3
Carmack, E.4
Mize, G.J.5
Morris, D.R.6
Garvik, B.M.7
Yates Iii, J.R.8
-
41
-
-
84865188328
-
Going forward: Increasing the accessibility of imaging mass spectrometry
-
22634082 10.1016/j.jprot.2012.05.016 1:CAS:528:DC%2BC38Xot12lsrs%3D
-
McDonnell LA, Heeren RM, Andren PE, Stoeckli M, Corthals GL (2012) Going forward: increasing the accessibility of imaging mass spectrometry. J Proteomics 75(16):5113-5121
-
(2012)
J Proteomics
, vol.75
, Issue.16
, pp. 5113-5121
-
-
McDonnell, L.A.1
Heeren, R.M.2
Andren, P.E.3
Stoeckli, M.4
Corthals, G.L.5
-
42
-
-
10744223820
-
Identification of formaldehyde-induced modifications in proteins: Reactions with model peptides
-
Metz B, Kersten GF, Hoogerhout P, Brugghe HF, Timmermans HA, de Jong A, Meiring H, ten HJ, Hennink WE, Crommelin DJ, Jiskoot W (2004) Identification of formaldehyde-induced modifications in proteins: reactions with model peptides. J Biol Chem 279(8):6235-6243
-
(2004)
J Biol Chem
, vol.279
, Issue.8
, pp. 6235-6243
-
-
Metz, B.1
Kersten, G.F.2
Hoogerhout, P.3
Brugghe, H.F.4
Timmermans, H.A.5
De Jong, A.6
Meiring, H.7
Ten, H.J.8
Hennink, W.E.9
Crommelin, D.J.10
Jiskoot, W.11
-
43
-
-
33646908503
-
Identification of formaldehyde-induced modifications in proteins: Reactions with insulin
-
Metz B, Kersten GF, Baart GJ, de Jong A, Meiring H, ten HJ, van Steenbergen MJ, Hennink WE, Crommelin DJ, Jiskoot W (2006) Identification of formaldehyde-induced modifications in proteins: reactions with insulin. Bioconjug Chem 17(3):815-822
-
(2006)
Bioconjug Chem
, vol.17
, Issue.3
, pp. 815-822
-
-
Metz, B.1
Kersten, G.F.2
Baart, G.J.3
De Jong, A.4
Meiring, H.5
Ten, H.J.6
Van Steenbergen, M.J.7
Hennink, W.E.8
Crommelin, D.J.9
Jiskoot, W.10
-
44
-
-
84871439633
-
MALDI MS imaging as a tool for biomarker discovery: Methodological challenges in a clinical setting
-
23090913 10.1002/prca.201200033 1:CAS:528:DC%2BC38XhvVCrsLbE
-
Minerva L, Ceulemans A, Baggerman G, Arckens L (2012) MALDI MS imaging as a tool for biomarker discovery: methodological challenges in a clinical setting. Proteomics Clin Appl 6(11-12):581-595
-
(2012)
Proteomics Clin Appl
, vol.6
, Issue.11-12
, pp. 581-595
-
-
Minerva, L.1
Ceulemans, A.2
Baggerman, G.3
Arckens, L.4
-
45
-
-
84873712068
-
Imaging the clear cell renal cell carcinoma proteome
-
23009866 10.1016/j.juro.2012.09.074 1:CAS:528:DC%2BC3sXhtFKgt7Y%3D
-
Morgan TM, Seeley EH, Fadare O, Caprioli RM, Clark PE (2013) Imaging the clear cell renal cell carcinoma proteome. J Urol 189(3):1097-1103
-
(2013)
J Urol
, vol.189
, Issue.3
, pp. 1097-1103
-
-
Morgan, T.M.1
Seeley, E.H.2
Fadare, O.3
Caprioli, R.M.4
Clark, P.E.5
-
46
-
-
71849100285
-
Imaging mass spectrometry of gastric carcinoma in formalin-fixed paraffin-embedded tissue microarray
-
19961487 10.1111/j.1349-7006.2009.01384.x 1:CAS:528: DC%2BC3cXnvVOiuw%3D%3D
-
Morita Y, Ikegami K, Goto-Inoue N, Hayasaka T, Zaima N, Tanaka H, Uehara T, Setoguchi T, Sakaguchi T, Igarashi H, Sugimura H, Setou M, Konno H (2010) Imaging mass spectrometry of gastric carcinoma in formalin-fixed paraffin-embedded tissue microarray. Cancer Sci 101(1):267-273
-
(2010)
Cancer Sci
, vol.101
, Issue.1
, pp. 267-273
-
-
Morita, Y.1
Ikegami, K.2
Goto-Inoue, N.3
Hayasaka, T.4
Zaima, N.5
Tanaka, H.6
Uehara, T.7
Setoguchi, T.8
Sakaguchi, T.9
Igarashi, H.10
Sugimura, H.11
Setou, M.12
Konno, H.13
-
47
-
-
84862777470
-
Proteome of formalin-fixed paraffin-embedded pancreatic ductal adenocarcinoma and lymph node metastases
-
22081483 10.1002/path.3959 1:CAS:528:DC%2BC38XjsVWhtrc%3D
-
Naidoo K, Jones R, Dmitrovic B, Wijesuriya N, Kocher H, Hart IR, Crnogorac-Jurcevic T (2012) Proteome of formalin-fixed paraffin-embedded pancreatic ductal adenocarcinoma and lymph node metastases. J Pathol 226(5):756-763
-
(2012)
J Pathol
, vol.226
, Issue.5
, pp. 756-763
-
-
Naidoo, K.1
Jones, R.2
Dmitrovic, B.3
Wijesuriya, N.4
Kocher, H.5
Hart, I.R.6
Crnogorac-Jurcevic, T.7
-
48
-
-
84865790403
-
Proteome analysis of laser microdissected glomeruli from formalin-fixed paraffin-embedded kidneys of autopsies of diabetic patients: Nephronectin is associated with the development of diabetic glomerulosclerosis
-
22172726 10.1093/ndt/gfr682 1:CAS:528:DC%2BC38XmvVejurk%3D
-
Nakatani S, Wei M, Ishimura E, Kakehashi A, Mori K, Nishizawa Y, Inaba M, Wanibuchi H (2012) Proteome analysis of laser microdissected glomeruli from formalin-fixed paraffin-embedded kidneys of autopsies of diabetic patients: nephronectin is associated with the development of diabetic glomerulosclerosis. Nephrol Dial Transplant 27(5):1889-1897
-
(2012)
Nephrol Dial Transplant
, vol.27
, Issue.5
, pp. 1889-1897
-
-
Nakatani, S.1
Wei, M.2
Ishimura, E.3
Kakehashi, A.4
Mori, K.5
Nishizawa, Y.6
Inaba, M.7
Wanibuchi, H.8
-
49
-
-
46749106319
-
Protein profiling of formalin fixed paraffin embedded tissue: Identification of potential biomarkers for pediatric brainstem glioma
-
21136889 10.1002/prca.200780061 1:CAS:528:DC%2BD1cXotF2nsro%3D
-
Nazarian J, Santi M, Hathout Y, Macdonald TJ (2008) Protein profiling of formalin fixed paraffin embedded tissue: Identification of potential biomarkers for pediatric brainstem glioma. Proteomics Clin Appl 2(6):915-924
-
(2008)
Proteomics Clin Appl
, vol.2
, Issue.6
, pp. 915-924
-
-
Nazarian, J.1
Santi, M.2
Hathout, Y.3
Macdonald, T.J.4
-
50
-
-
70149108744
-
Quantitative proteomics using formalin-fixed paraffin-embedded tissues of oral squamous cell carcinoma
-
19522851 10.1111/j.1349-7006.2009.01227.x 1:CAS:528:DC%2BD1MXhtFOhurvL
-
Negishi A, Masuda M, Ono M, Honda K, Shitashige M, Satow R, Sakuma T, Kuwabara H, Nakanishi Y, Kanai Y, Omura K, Hirohashi S, Yamada T (2009) Quantitative proteomics using formalin-fixed paraffin-embedded tissues of oral squamous cell carcinoma. Cancer Sci 100(9):1605-1611
-
(2009)
Cancer Sci
, vol.100
, Issue.9
, pp. 1605-1611
-
-
Negishi, A.1
Masuda, M.2
Ono, M.3
Honda, K.4
Shitashige, M.5
Satow, R.6
Sakuma, T.7
Kuwabara, H.8
Nakanishi, Y.9
Kanai, Y.10
Omura, K.11
Hirohashi, S.12
Yamada, T.13
-
51
-
-
45749127864
-
Mining the archival formalin-fixed paraffin-embedded tissue proteome: Opportunities and challenges
-
18563244 10.1039/b800098k 1:CAS:528:DC%2BD1cXntlGgu7c%3D
-
Nirmalan NJ, Harnden P, Selby PJ, Banks RE (2008) Mining the archival formalin-fixed paraffin-embedded tissue proteome: opportunities and challenges. Mol BioSyst 4(7):712-720
-
(2008)
Mol BioSyst
, vol.4
, Issue.7
, pp. 712-720
-
-
Nirmalan, N.J.1
Harnden, P.2
Selby, P.J.3
Banks, R.E.4
-
52
-
-
79955448303
-
Initial development and validation of a novel extraction method for quantitative mining of the formalin-fixed, paraffin-embedded tissue proteome for biomarker investigations
-
10.1021/pr100812d 21117664 10.1021/pr100812d 1:CAS:528:DC%2BC3cXhs1SrsbzM
-
Nirmalan NJ, Hughes C, Peng J, McKenna T, Langridge J, Cairns DA, Harnden P, Selby PJ, Banks RE (2011) Initial development and validation of a novel extraction method for quantitative mining of the formalin-fixed, paraffin-embedded tissue proteome for biomarker investigations. J Proteome Res 10(2):896-906. doi: 10.1021/pr100812d
-
(2011)
J Proteome Res
, vol.10
, Issue.2
, pp. 896-906
-
-
Nirmalan, N.J.1
Hughes, C.2
Peng, J.3
McKenna, T.4
Langridge, J.5
Cairns, D.A.6
Harnden, P.7
Selby, P.J.8
Banks, R.E.9
-
53
-
-
77950517812
-
Proteomic analysis of laser-microdissected paraffin-embedded tissues: (2) MRM assay for stage-related proteins upon non-metastatic lung adenocarcinoma
-
19944198 10.1016/j.jprot.2009.11.010 1:CAS:528:DC%2BC3cXksFGhu7c%3D
-
Nishimura T, Nomura M, Tojo H, Hamasaki H, Fukuda T, Fujii K, Mikami S, Bando Y, Kato H (2010) Proteomic analysis of laser-microdissected paraffin-embedded tissues: (2) MRM assay for stage-related proteins upon non-metastatic lung adenocarcinoma. J Proteomics 73(6):1100-1110
-
(2010)
J Proteomics
, vol.73
, Issue.6
, pp. 1100-1110
-
-
Nishimura, T.1
Nomura, M.2
Tojo, H.3
Hamasaki, H.4
Fukuda, T.5
Fujii, K.6
Mikami, S.7
Bando, Y.8
Kato, H.9
-
54
-
-
56249132978
-
Overexpression of heat shock protein 27 in squamous cell carcinoma of the uterine cervix: A proteomic analysis using archival formalin-fixed, paraffin-embedded tissues
-
18755499 10.1016/j.humpath.2008.06.010 1:CAS:528:DC%2BD1cXhsVWrsLbI
-
Ono A, Kumai T, Koizumi H, Nishikawa H, Kobayashi S, Tadokoro M (2009) Overexpression of heat shock protein 27 in squamous cell carcinoma of the uterine cervix: a proteomic analysis using archival formalin-fixed, paraffin-embedded tissues. Hum Pathol 40(1):41-49
-
(2009)
Hum Pathol
, vol.40
, Issue.1
, pp. 41-49
-
-
Ono, A.1
Kumai, T.2
Koizumi, H.3
Nishikawa, H.4
Kobayashi, S.5
Tadokoro, M.6
-
55
-
-
77954378942
-
Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry
-
20469934 10.1021/pr100234w 1:CAS:528:DC%2BC3cXmsFSnsrk%3D
-
Ostasiewicz P, Zielinska DF, Mann M, Wisniewski JR (2010) Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry. J Proteome Res 9(7):3688-3700
-
(2010)
J Proteome Res
, vol.9
, Issue.7
, pp. 3688-3700
-
-
Ostasiewicz, P.1
Zielinska, D.F.2
Mann, M.3
Wisniewski, J.R.4
-
56
-
-
29144518633
-
Efficient method for the proteomic analysis of fixed and embedded tissues
-
16335994 10.1021/pr050208p 1:CAS:528:DC%2BD2MXhtVGqs7vI
-
Palmer-Toy DE, Krastins B, Sarracino DA, Nadol JB Jr, Merchant SN (2005) Efficient method for the proteomic analysis of fixed and embedded tissues. J Proteome Res 4(6):2404-2411
-
(2005)
J Proteome Res
, vol.4
, Issue.6
, pp. 2404-2411
-
-
Palmer-Toy, D.E.1
Krastins, B.2
Sarracino, D.A.3
Nadol, Jr.J.B.4
Merchant, S.N.5
-
57
-
-
39749160439
-
Proteomic analysis of laser-captured paraffin-embedded tissues: A molecular portrait of head and neck cancer progression
-
18281532 10.1158/1078-0432.CCR-07-1497 1:CAS:528:DC%2BD1cXhvF2gtbk%3D
-
Patel V, Hood BL, Molinolo AA, Lee NH, Conrads TP, Braisted JC, Krizman DB, Veenstra TD, Gutkind JS (2008) Proteomic analysis of laser-captured paraffin-embedded tissues: a molecular portrait of head and neck cancer progression. Clin Cancer Res 14(4):1002-1014
-
(2008)
Clin Cancer Res
, vol.14
, Issue.4
, pp. 1002-1014
-
-
Patel, V.1
Hood, B.L.2
Molinolo, A.A.3
Lee, N.H.4
Conrads, T.P.5
Braisted, J.C.6
Krizman, D.B.7
Veenstra, T.D.8
Gutkind, J.S.9
-
58
-
-
67449105048
-
Grade-dependent proteomics characterization of kidney cancer
-
19164279 10.1074/mcp.M800252-MCP200 1:CAS:528:DC%2BD1MXmtlGqtLk%3D
-
Perroud B, Ishimaru T, Borowsky AD, Weiss RH (2009) Grade-dependent proteomics characterization of kidney cancer. Mol Cell Proteomics 8(5):971-985
-
(2009)
Mol Cell Proteomics
, vol.8
, Issue.5
, pp. 971-985
-
-
Perroud, B.1
Ishimaru, T.2
Borowsky, A.D.3
Weiss, R.H.4
-
59
-
-
84861990380
-
Selected reaction monitoring-based proteomics: Workflows, potential, pitfalls and future directions
-
22669653 10.1038/nmeth.2015 1:CAS:528:DC%2BC38XotVSrurg%3D
-
Picotti P, Aebersold R (2012) Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions. Nat Methods 9(6):555-566
-
(2012)
Nat Methods
, vol.9
, Issue.6
, pp. 555-566
-
-
Picotti, P.1
Aebersold, R.2
-
60
-
-
27144511949
-
Liquid tissue: Proteomic profiling of formalin-fixed tissues
-
Prieto DA, Hood BL, Darfler MM, Guiel TG, Lucas DA, Conrads TP, Veenstra TD, Krizman DB (2005) Liquid tissue: proteomic profiling of formalin-fixed tissues. Biotechniques Suppl 32-35
-
(2005)
Biotechniques
, Issue.SUPPL.
, pp. 32-35
-
-
Prieto, D.A.1
Hood, B.L.2
Darfler, M.M.3
Guiel, T.G.4
Lucas, D.A.5
Conrads, T.P.6
Veenstra, T.D.7
Krizman, D.B.8
-
61
-
-
79953072078
-
The use of formalin fixed wax embedded tissue for proteomic analysis
-
21285242 10.1136/jcp.2010.086835 1:CAS:528:DC%2BC3MXlvFGqt7Y%3D
-
Ralton LD, Murray GI (2011) The use of formalin fixed wax embedded tissue for proteomic analysis. J Clin Pathol 64(4):297-302
-
(2011)
J Clin Pathol
, vol.64
, Issue.4
, pp. 297-302
-
-
Ralton, L.D.1
Murray, G.I.2
-
62
-
-
64749097274
-
Proteomics on fixed tissue specimens - A review
-
19829741 10.2174/157016409787847420 1:CAS:528:DC%2BD1MXltVelu70%3D
-
Reimel BA, Pan S, May DH, Shaffer SA, Goodlett DR, McIntosh MW, Yerian LM, Bronner MP, Chen R, Brentnall TA (2009) Proteomics on fixed tissue specimens - a review. Curr Proteomics 6(1):63-69
-
(2009)
Curr Proteomics
, vol.6
, Issue.1
, pp. 63-69
-
-
Reimel, B.A.1
Pan, S.2
May, D.H.3
Shaffer, S.A.4
Goodlett, D.R.5
McIntosh, M.W.6
Yerian, L.M.7
Bronner, M.P.8
Chen, R.9
Brentnall, T.A.10
-
63
-
-
78049249542
-
Combined mass spectrometry-and immunohistochemistry-based approach to determine protein expression in archival melanoma-proof of principle
-
20849468 10.1111/j.1755-148X.2010.00774.x 1:CAS:528:DC%2BC3cXhsFanu7fN
-
Rezaul K, Murphy M, Lundgren DH, Wilson L, Han DK (2010) Combined mass spectrometry-and immunohistochemistry-based approach to determine protein expression in archival melanoma-proof of principle. Pigment Cell Melanoma Res 23(6):849-852
-
(2010)
Pigment Cell Melanoma Res
, vol.23
, Issue.6
, pp. 849-852
-
-
Rezaul, K.1
Murphy, M.2
Lundgren, D.H.3
Wilson, L.4
Han, D.K.5
-
64
-
-
53549127586
-
Protein unlocking procedures of formalin-fixed paraffin-embedded tissues: Application to MALDI-TOF imaging MS investigations
-
18704906 10.1002/pmic.200701143 1:CAS:528:DC%2BD1cXht1Sgu7%2FP
-
Ronci M, Bonanno E, Colantoni A, Pieroni L, Di IC, Spagnoli LG, Federici G, Urbani A (2008) Protein unlocking procedures of formalin-fixed paraffin-embedded tissues: application to MALDI-TOF imaging MS investigations. Proteomics 8(18):3702-3714
-
(2008)
Proteomics
, vol.8
, Issue.18
, pp. 3702-3714
-
-
Ronci, M.1
Bonanno, E.2
Colantoni, A.3
Pieroni, L.4
Di, I.C.5
Spagnoli, L.G.6
Federici, G.7
Urbani, A.8
-
65
-
-
79951673520
-
MALDI imaging mass spectrometry of human tissue: Method challenges and clinical perspectives
-
21292337 10.1016/j.tibtech.2010.12.002 1:CAS:528:DC%2BC3MXit1GnsLg%3D
-
Seeley EH, Caprioli RM (2011) MALDI imaging mass spectrometry of human tissue: method challenges and clinical perspectives. Trends Biotechnol 29(3):136-143
-
(2011)
Trends Biotechnol
, vol.29
, Issue.3
, pp. 136-143
-
-
Seeley, E.H.1
Caprioli, R.M.2
-
66
-
-
0025829609
-
Antigen retrieval in formalin-fixed, paraffin-embedded tissues: An enhancement method for immunohistochemical staining based on microwave oven heating of tissue sections
-
1709656 10.1177/39.6.1709656 1:CAS:528:DyaK3MXkt1Gns7c%3D
-
Shi SR, Key ME, Kalra KL (1991) Antigen retrieval in formalin-fixed, paraffin-embedded tissues: an enhancement method for immunohistochemical staining based on microwave oven heating of tissue sections. J Histochem Cytochem 39(6):741-748
-
(1991)
J Histochem Cytochem
, vol.39
, Issue.6
, pp. 741-748
-
-
Shi, S.R.1
Key, M.E.2
Kalra, K.L.3
-
67
-
-
33646698472
-
Protein extraction from formalin-fixed, paraffin-embedded tissue sections: Quality evaluation by mass spectrometry
-
16399996 10.1369/jhc.5B6851.2006 1:CAS:528:DC%2BD28Xkslyiu7o%3D
-
Shi SR, Liu C, Balgley BM, Lee C, Taylor CR (2006) Protein extraction from formalin-fixed, paraffin-embedded tissue sections: quality evaluation by mass spectrometry. J Histochem Cytochem 54(6):739-743
-
(2006)
J Histochem Cytochem
, vol.54
, Issue.6
, pp. 739-743
-
-
Shi, S.R.1
Liu, C.2
Balgley, B.M.3
Lee, C.4
Taylor, C.R.5
-
68
-
-
71049141298
-
Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis
-
19467989 10.1074/mcp.M800518-MCP200 1:CAS:528:DC%2BD1MXhtVSjtbjF
-
Sprung RW, Jr., Brock JW, Tanksley JP, Li M, Washington MK, Slebos RJ, Liebler DC (2009) Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis. Mol Cell Proteomics 8(8):1988-1998
-
(2009)
Mol Cell Proteomics
, vol.8
, Issue.8
, pp. 1988-1998
-
-
Sprung, Jr.R.W.1
Brock, J.W.2
Tanksley, J.P.3
Li, M.4
Washington, M.K.5
Slebos, R.J.6
Liebler, D.C.7
-
69
-
-
84861814883
-
Precision of multiple reaction monitoring mass spectrometry analysis of formalin-fixed, paraffin-embedded tissue
-
Sprung RW, Martinez MA, Carpenter KL, Ham AJ, Washington MK, Arteaga CL, Sanders ME, Liebler DC (2012) Precision of multiple reaction monitoring mass spectrometry analysis of formalin-fixed, paraffin-embedded tissue. J Proteome Res
-
(2012)
J Proteome Res
-
-
Sprung, R.W.1
Ma, M.2
Carpenter, K.L.3
Ham, A.J.4
Washington, M.K.5
Arteaga, C.L.6
Sanders, M.E.7
Liebler, D.C.8
-
70
-
-
78651516681
-
Proteomic analysis of formalin-fixed, paraffin-embedded lung neuroendocrine tumor samples from hospital archives
-
21147281 10.1016/j.jprot.2010.12.001 1:CAS:528:DC%2BC3MXhtVWqs7w%3D
-
Tanca A, Addis MF, Pagnozzi D, Cossu-Rocca P, Tonelli R, Falchi G, Eccher A, Roggio T, Fanciulli G, Uzzau S (2011a) Proteomic analysis of formalin-fixed, paraffin-embedded lung neuroendocrine tumor samples from hospital archives. J Proteomics 74(3):359-370
-
(2011)
J Proteomics
, vol.74
, Issue.3
, pp. 359-370
-
-
Tanca, A.1
Addis, M.F.2
Pagnozzi, D.3
Cossu-Rocca, P.4
Tonelli, R.5
Falchi, G.6
Eccher, A.7
Roggio, T.8
Fanciulli, G.9
Uzzau, S.10
-
71
-
-
79951731085
-
Application of 2-D DIGE to formalin-fixed, paraffin-embedded tissues
-
21337705 10.1002/pmic.201000353 1:CAS:528:DC%2BC3MXitFGktLY%3D
-
Tanca A, Pagnozzi D, Falchi G, Tonelli R, Rocca S, Roggio T, Uzzau S, Addis MF (2011b) Application of 2-D DIGE to formalin-fixed, paraffin-embedded tissues. Proteomics 11(5):1005-1011
-
(2011)
Proteomics
, vol.11
, Issue.5
, pp. 1005-1011
-
-
Tanca, A.1
Pagnozzi, D.2
Falchi, G.3
Tonelli, R.4
Rocca, S.5
Roggio, T.6
Uzzau, S.7
Addis, M.F.8
-
72
-
-
84858994198
-
Setting proteins free: Progresses and achievements in proteomics of formalin-fixed, paraffin-embedded tissues
-
22213597 10.1002/prca.201100044 1:CAS:528:DC%2BC3MXhs1OitbnL
-
Tanca A, Pagnozzi D, Addis MF (2012a) Setting proteins free: progresses and achievements in proteomics of formalin-fixed, paraffin-embedded tissues. Proteomics Clin Appl 6(1-2):7-21
-
(2012)
Proteomics Clin Appl
, vol.6
, Issue.1-2
, pp. 7-21
-
-
Tanca, A.1
Pagnozzi, D.2
Addis, M.F.3
-
73
-
-
84870393717
-
Comparability of differential proteomics data generated from paired archival fresh-frozen and formalin-fixed samples by GeLC-MS/MS and spectral counting
-
23043969 10.1016/j.jprot.2012.09.033 1:CAS:528:DC%2BC38Xhs1CjsL7J
-
Tanca A, Pagnozzi D, Burrai GP, Polinas M, Uzzau S, Antuofermo E, Addis MF (2012b) Comparability of differential proteomics data generated from paired archival fresh-frozen and formalin-fixed samples by GeLC-MS/MS and spectral counting. J Proteomics 77:561-576
-
(2012)
J Proteomics
, vol.77
, pp. 561-576
-
-
Tanca, A.1
Pagnozzi, D.2
Burrai, G.P.3
Polinas, M.4
Uzzau, S.5
Antuofermo, E.6
Addis, M.F.7
-
74
-
-
84876338400
-
Application of 2-D DIGE to formalin-fixed diseased tissue samples from hospital repositories: Results from four case studies
-
Tanca A, Pisanu S, Biosa G, Pagnozzi D, Antuofermo E, Burrai GP, Canzonieri V, Cossu-Rocca P, De Re V, Eccher A, Fanciulli G, Rocca S, Uzzau S, Addis MF (2012c) Application of 2-D DIGE to formalin-fixed diseased tissue samples from hospital repositories: results from four case studies. Proteomics Clin Appl
-
(2012)
Proteomics Clin Appl
-
-
Tanca, A.1
Pisanu, S.2
Biosa, G.3
Pagnozzi, D.4
Antuofermo, E.5
Burrai, G.P.6
Canzonieri, V.7
Cossu-Rocca, P.8
De Re, V.9
Eccher, A.10
Fanciulli, G.11
Rocca, S.12
Uzzau, S.13
Addis, M.F.14
-
75
-
-
65249162283
-
N-linked glycoproteomic analysis of formalin-fixed and paraffin-embedded tissues
-
10.1021/pr800952h 19714870 10.1021/pr800952h 1:CAS:528: DC%2BD1MXisVCjtL4%3D
-
Tian Y, Gurley K, Meany DL, Kemp CJ, Zhang H (2009) N-linked glycoproteomic analysis of formalin-fixed and paraffin-embedded tissues. J Proteome Res 8(4):1657-1662. doi: 10.1021/pr800952h
-
(2009)
J Proteome Res
, vol.8
, Issue.4
, pp. 1657-1662
-
-
Tian, Y.1
Gurley, K.2
Meany, D.L.3
Kemp, C.J.4
Zhang, H.5
-
76
-
-
44149119998
-
Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions
-
18513538 10.1016/j.aca.2008.04.049 1:CAS:528:DC%2BD1cXms1yjur0%3D
-
Toews J, Rogalski JC, Clark TJ, Kast J (2008) Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions. Anal Chim Acta 618(2):168-183
-
(2008)
Anal Chim Acta
, vol.618
, Issue.2
, pp. 168-183
-
-
Toews, J.1
Rogalski, J.C.2
Clark, T.J.3
Kast, J.4
-
77
-
-
50249147732
-
MALDI imaging mass spectrometry for direct tissue analysis: A new frontier for molecular histology
-
18618129 10.1007/s00418-008-0469-9 1:CAS:528:DC%2BD1cXhtVWns7jN
-
Walch A, Rauser S, Deininger SO, Hofler H (2008) MALDI imaging mass spectrometry for direct tissue analysis: a new frontier for molecular histology. Histochem Cell Biol 130(3):421-434
-
(2008)
Histochem Cell Biol
, vol.130
, Issue.3
, pp. 421-434
-
-
Walch, A.1
Rauser, S.2
Deininger, S.O.3
Hofler, H.4
-
78
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
11231557 10.1038/85686 1:CAS:528:DC%2BD3MXhslaqtbw%3D
-
Washburn MP, Wolters D, Yates JR III (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol 19(3):242-247
-
(2001)
Nat Biotechnol
, vol.19
, Issue.3
, pp. 242-247
-
-
Washburn, M.P.1
Wolters, D.2
Yates Iii, J.R.3
-
79
-
-
79960011243
-
High recovery FASP applied to the proteomic analysis of microdissected formalin fixed paraffin embedded cancer tissues retrieves known colon cancer markers
-
21526778 10.1021/pr200019m 1:CAS:528:DC%2BC3MXmtFyhsro%3D
-
Wisniewski JR, Ostasiewicz P, Mann M (2011) High recovery FASP applied to the proteomic analysis of microdissected formalin fixed paraffin embedded cancer tissues retrieves known colon cancer markers. J Proteome Res 10(7):3040-3049
-
(2011)
J Proteome Res
, vol.10
, Issue.7
, pp. 3040-3049
-
-
Wisniewski, J.R.1
Ostasiewicz, P.2
Mann, M.3
-
80
-
-
84892625057
-
Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10,000 proteins
-
Wisniewski JR, Dus K, Mann M (2012) Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10,000 proteins. Proteomics Clin Appl
-
(2012)
Proteomics Clin Appl
-
-
Wisniewski, J.R.1
Dus, K.2
Mann, M.3
-
81
-
-
84861577034
-
Recent advances on multidimensional liquid chromatography-mass spectrometry for proteomics: From qualitative to quantitative analysis-a review
-
22652259 10.1016/j.aca.2012.04.010 1:CAS:528:DC%2BC38XmslKrsro%3D
-
Wu Q, Yuan H, Zhang L, Zhang Y (2012) Recent advances on multidimensional liquid chromatography-mass spectrometry for proteomics: from qualitative to quantitative analysis-a review. Anal Chim Acta 731:1-10
-
(2012)
Anal Chim Acta
, vol.731
, pp. 1-10
-
-
Wu, Q.1
Yuan, H.2
Zhang, L.3
Zhang, Y.4
-
82
-
-
77952764025
-
Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry
-
20124091 10.1369/jhc.2010.955526 1:CAS:528:DC%2BC3cXms1Sjs70%3D
-
Xiao Z, Li G, Chen Y, Li M, Peng F, Li C, Li F, Yu Y, Ouyang Y, Xiao Z, Chen Z (2010) Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry. J Histochem Cytochem 58(6):517-527
-
(2010)
J Histochem Cytochem
, vol.58
, Issue.6
, pp. 517-527
-
-
Xiao, Z.1
Li, G.2
Chen, Y.3
Li, M.4
Peng, F.5
Li, C.6
Li, F.7
Yu, Y.8
Ouyang, Y.9
Xiao, Z.10
Chen, Z.11
-
83
-
-
79955680588
-
Factors influencing the degradation of archival formalin-fixed paraffin-embedded tissue sections
-
10.1369/0022155411398488 10.1369/0022155411398488 1:CAS:528: DC%2BC3MXkvVOls7g%3D
-
Xie R, Chung JY, Ylaya K, Williams RL, Guerrero N, Nakatsuka N, Badie C, Hewitt SM (2011) Factors influencing the degradation of archival formalin-fixed paraffin-embedded tissue sections. J Histochem Cytochem: official journal of the Histochemistry Society 59(4):356-365. doi: 10.1369/0022155411398488
-
(2011)
J Histochem Cytochem: Official Journal of the Histochemistry Society
, vol.59
, Issue.4
, pp. 356-365
-
-
Xie, R.1
Chung, J.Y.2
Ylaya, K.3
Williams, R.L.4
Guerrero, N.5
Nakatsuka, N.6
Badie, C.7
Hewitt, S.M.8
-
84
-
-
65549169001
-
Targeted proteomics for validation of biomarkers in clinical samples
-
19109305 10.1093/bfgp/eln050 1:CAS:528:DC%2BD1MXlsVeltLc%3D
-
Ye X, Blonder J, Veenstra TD (2009) Targeted proteomics for validation of biomarkers in clinical samples. Brief Funct Genomic Proteomic 8(2):126-135
-
(2009)
Brief Funct Genomic Proteomic
, vol.8
, Issue.2
, pp. 126-135
-
-
Ye, X.1
Blonder, J.2
Veenstra, T.D.3
|