-
1
-
-
35348961403
-
An ecological and evolutionary perspective on human-microbe mutualism and disease
-
Dethlefsen L, McFall-Ngai M, Relman DA (2007) An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature 449(7164):811-818.
-
(2007)
Nature
, vol.449
, Issue.7164
, pp. 811-818
-
-
Dethlefsen, L.1
McFall-Ngai, M.2
Relman, D.A.3
-
2
-
-
32944466887
-
Ecological and evolutionary forces shaping microbial diversity in the human intestine
-
Ley RE, Peterson DA, Gordon JI (2006) Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124(4):837-848.
-
(2006)
Cell
, vol.124
, Issue.4
, pp. 837-848
-
-
Ley, R.E.1
Peterson, D.A.2
Gordon, J.I.3
-
3
-
-
2442611939
-
Carbon nutrition of Escherichia coli in the mouse intestine
-
Chang DE, et al. (2004) Carbon nutrition of Escherichia coli in the mouse intestine. Proc Natl Acad Sci USA 101(19):7427-7432.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.19
, pp. 7427-7432
-
-
Chang, D.E.1
-
4
-
-
0036399823
-
How host-microbial interactions shape the nutrient environment of the mammalian intestine
-
Hooper LV, Midtvedt T, Gordon JI (2002) How host-microbial interactions shape the nutrient environment of the mammalian intestine. Annu Rev Nutr 22:283-307.
-
(2002)
Annu Rev Nutr
, vol.22
, pp. 283-307
-
-
Hooper, L.V.1
Midtvedt, T.2
Gordon, J.I.3
-
5
-
-
66249136714
-
A complex, but uniform O-glycosylation of the human MUC2 mucin from colonic biopsies analyzed by nanoLC/MSn
-
Larsson JM, Karlsson H, Sjövall H, Hansson GC (2009) A complex, but uniform O-glycosylation of the human MUC2 mucin from colonic biopsies analyzed by nanoLC/MSn. Glycobiology 19(7):756-766.
-
(2009)
Glycobiology
, vol.19
, Issue.7
, pp. 756-766
-
-
Larsson, J.M.1
Karlsson, H.2
Sjövall, H.3
Hansson, G.C.4
-
6
-
-
0035185695
-
Mucinases and sialidases: Their role in the pathogenesis of sexually transmitted infections in the female genital tract
-
Wiggins R, Hicks SJ, Soothill PW, Millar MR, Corfield AP (2001) Mucinases and sialidases: Their role in the pathogenesis of sexually transmitted infections in the female genital tract. Sex Transm Infect 77(6):402-408.
-
(2001)
Sex Transm Infect
, vol.77
, Issue.6
, pp. 402-408
-
-
Wiggins, R.1
Hicks, S.J.2
Soothill, P.W.3
Millar, M.R.4
Corfield, A.P.5
-
7
-
-
1542405315
-
Diversity of microbial sialic acid metabolism
-
Vimr ER, Kalivoda KA, Deszo EL, Steenbergen SM (2004) Diversity of microbial sialic acid metabolism. Microbiol Mol Biol Rev 68(1):132-153.
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, Issue.1
, pp. 132-153
-
-
Vimr, E.R.1
Kalivoda, K.A.2
Deszo, E.L.3
Steenbergen, S.M.4
-
8
-
-
0036462606
-
Chemical diversity in the sialic acids and related alpha-keto acids: An evolutionary perspective
-
Angata T, Varki A (2002) Chemical diversity in the sialic acids and related alpha-keto acids: An evolutionary perspective. Chem Rev 102(2):439-469.
-
(2002)
Chem Rev
, vol.102
, Issue.2
, pp. 439-469
-
-
Angata, T.1
Varki, A.2
-
9
-
-
34948865783
-
Sialic acid utilization by bacterial pathogens
-
Severi E, Hood DW, Thomas GH (2007) Sialic acid utilization by bacterial pathogens. Microbiology 153(Pt 9):2817-2822.
-
(2007)
Microbiology
, vol.153
, Issue.PART 9
, pp. 2817-2822
-
-
Severi, E.1
Hood, D.W.2
Thomas, G.H.3
-
10
-
-
0022346257
-
Identification of an inducible catabolic system for sialic acids (nan) in Escherichia coli
-
Vimr ER, Troy FA (1985) Identification of an inducible catabolic system for sialic acids (nan) in Escherichia coli. J Bacteriol 164(2):845-853.
-
(1985)
J Bacteriol
, vol.164
, Issue.2
, pp. 845-853
-
-
Vimr, E.R.1
Troy, F.A.2
-
11
-
-
69049084604
-
Sialic acid catabolism confers a competitive advantage to pathogenic Vibrio cholerae in the mouse intestine
-
Almagro-Moreno S, Boyd EF (2009) Sialic acid catabolism confers a competitive advantage to pathogenic Vibrio cholerae in the mouse intestine. Infect Immun 77(9): 3807-3816.
-
(2009)
Infect Immun
, vol.77
, Issue.9
, pp. 3807-3816
-
-
Almagro-Moreno, S.1
Boyd, E.F.2
-
12
-
-
67651213994
-
The capability of catabolic utilization of N-acetylneuraminic acid, a sialic acid, is essential for Vibrio vulnificus pathogenesis
-
Jeong HG, et al. (2009) The capability of catabolic utilization of N-acetylneuraminic acid, a sialic acid, is essential for Vibrio vulnificus pathogenesis. Infect Immun 77(8): 3209-3217.
-
(2009)
Infect Immun
, vol.77
, Issue.8
, pp. 3209-3217
-
-
Jeong, H.G.1
-
13
-
-
84876088524
-
Sialic acid catabolism in Staphylococcus aureus
-
Olson ME, King JM, Yahr TL, Horswill AR (2013) Sialic acid catabolism in Staphylococcus aureus. J Bacteriol 195(8):1779-1788.
-
(2013)
J Bacteriol
, vol.195
, Issue.8
, pp. 1779-1788
-
-
Olson, M.E.1
King, J.M.2
Yahr, T.L.3
Horswill, A.R.4
-
14
-
-
80051915419
-
RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression
-
Mandlik A, et al. (2011) RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression. Cell Host Microbe 10(2):165-174.
-
(2011)
Cell Host Microbe
, vol.10
, Issue.2
, pp. 165-174
-
-
Mandlik, A.1
-
15
-
-
67449122992
-
Insights into the evolution of sialic acid catabolism among bacteria
-
Almagro-Moreno S, Boyd EF (2009) Insights into the evolution of sialic acid catabolism among bacteria. BMC Evol Biol 9:118.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 118
-
-
Almagro-Moreno, S.1
Boyd, E.F.2
-
16
-
-
0032929297
-
Convergent pathways for utilization of the amino sugars N-acetylglucosamine, N-acetylmannosamine, and N-acetylneuraminic acid by Escherichia coli
-
Plumbridge J, Vimr E (1999) Convergent pathways for utilization of the amino sugars N-acetylglucosamine, N-acetylmannosamine, and N-acetylneuraminic acid by Escherichia coli. J Bacteriol 181(1):47-54.
-
(1999)
J Bacteriol
, vol.181
, Issue.1
, pp. 47-54
-
-
Plumbridge, J.1
Vimr, E.2
-
17
-
-
0041559751
-
Regulation of sialic acid catabolism by the DNA binding protein NanR in Escherichia coli
-
Kalivoda KA, Steenbergen SM, Vimr ER, Plumbridge J (2003) Regulation of sialic acid catabolism by the DNA binding protein NanR in Escherichia coli. J Bacteriol 185(16): 4806-4815.
-
(2003)
J Bacteriol
, vol.185
, Issue.16
, pp. 4806-4815
-
-
Kalivoda, K.A.1
Steenbergen, S.M.2
Vimr, E.R.3
Plumbridge, J.4
-
18
-
-
34548673085
-
Regulation of sialic acid transport and catabolism in Haemophilus influenzae
-
Johnston JW, et al. (2007) Regulation of sialic acid transport and catabolism in Haemophilus influenzae. Mol Microbiol 66(1):26-39.
-
(2007)
Mol Microbiol
, vol.66
, Issue.1
, pp. 26-39
-
-
Johnston, J.W.1
-
19
-
-
77956511533
-
Sialic acid transport and catabolism are cooperatively regulated by SiaR and CRP in nontypeable Haemophilus influenzae
-
Johnston JW, Shamsulddin H, Miller AF, Apicella MA (2010) Sialic acid transport and catabolism are cooperatively regulated by SiaR and CRP in nontypeable Haemophilus influenzae. BMC Microbiol 10:240.
-
(2010)
BMC Microbiol
, vol.10
, pp. 240
-
-
Johnston, J.W.1
Shamsulddin, H.2
Miller, A.F.3
Apicella, M.A.4
-
20
-
-
81755189037
-
Cooperative regulation of the Vibrio vulnificus nan gene cluster by NanR protein, cAMP receptor protein, and N-acetylmannosamine 6-phosphate
-
KimBS, Hwang J, KimMH, Choi SH (2011) Cooperative regulation of the Vibrio vulnificus nan gene cluster by NanR protein, cAMP receptor protein, and N-acetylmannosamine 6-phosphate. J Biol Chem286(47):40889-40899.
-
(2011)
J Biol Chem
, vol.286
, Issue.47
, pp. 40889-40899
-
-
Kim, B.S.1
Hwang, J.2
Kim, M.H.3
Choi, S.H.4
-
21
-
-
0035834455
-
Channeling of ammonia in glucosamine-6-phosphate synthase
-
Teplyakov A, Obmolova G, Badet B, Badet-DenisotMA(2001) Channeling of ammonia in glucosamine-6-phosphate synthase. J Mol Biol 313(5):1093-1102.
-
(2001)
J Mol Biol
, vol.313
, Issue.5
, pp. 1093-1102
-
-
Teplyakov, A.1
Obmolova, G.2
Badet, B.3
Badet-Denisot, M.A.4
-
22
-
-
77951550033
-
Crystal structure of SmcR, a quorum-sensing master regulator of Vibrio vulnificus, provides insight into its regulation of transcription
-
Kim Y, et al. (2010) Crystal structure of SmcR, a quorum-sensing master regulator of Vibrio vulnificus, provides insight into its regulation of transcription. J Biol Chem 285(18):14020-14030.
-
(2010)
J Biol Chem
, vol.285
, Issue.18
, pp. 14020-14030
-
-
Kim, Y.1
-
23
-
-
15944379232
-
The many faces of the helix-turn-helix domain: Transcription regulation and beyond
-
Aravind L, Anantharaman V, Balaji S, Babu MM, Iyer LM (2005) The many faces of the helix-turn-helix domain: Transcription regulation and beyond. FEMS Microbiol Rev 29(2):231-262.
-
(2005)
FEMS Microbiol Rev
, vol.29
, Issue.2
, pp. 231-262
-
-
Aravind, L.1
Anantharaman, V.2
Balaji, S.3
Babu, M.M.4
Iyer, L.M.5
-
24
-
-
0031872407
-
Meaning and therapeutic potential of microbial recognition of host glycoconjugates
-
Karlsson KA (1998) Meaning and therapeutic potential of microbial recognition of host glycoconjugates. Mol Microbiol 29(1):1-11.
-
(1998)
Mol Microbiol
, vol.29
, Issue.1
, pp. 1-11
-
-
Karlsson, K.A.1
-
25
-
-
0036603821
-
To sialylate, or not to sialylate: That is the question
-
Vimr E, Lichtensteiger C (2002) To sialylate, or not to sialylate: That is the question. Trends Microbiol 10(6):254-257.
-
(2002)
Trends Microbiol
, vol.10
, Issue.6
, pp. 254-257
-
-
Vimr, E.1
Lichtensteiger, C.2
-
26
-
-
0028862919
-
Derived structure of the putative sialic acid transporter from Escherichia coli predicts a novel sugar permease domain
-
Martinez J, Steenbergen S, Vimr E (1995) Derived structure of the putative sialic acid transporter from Escherichia coli predicts a novel sugar permease domain. J Bacteriol 177(20):6005-6010.
-
(1995)
J Bacteriol
, vol.177
, Issue.20
, pp. 6005-6010
-
-
Martinez, J.1
Steenbergen, S.2
Vimr, E.3
-
27
-
-
77954839926
-
Bacterial catabolism of nonulosonic (sialic) acid and fitness in the gut
-
Almagro-Moreno S, Boyd EF (2010) Bacterial catabolism of nonulosonic (sialic) acid and fitness in the gut. Gut Microbes 1(1):45-50.
-
(2010)
Gut Microbes
, vol.1
, Issue.1
, pp. 45-50
-
-
Almagro-Moreno, S.1
Boyd, E.F.2
-
28
-
-
0035281992
-
Fine structure of E. coli RNA polymerase-promoter interactions: Alpha subunit binding to the UP element minor groove
-
Ross W, Ernst A, Gourse RL (2001) Fine structure of E. coli RNA polymerase-promoter interactions: Alpha subunit binding to the UP element minor groove. Genes Dev 15(5):491-506.
-
(2001)
Genes Dev
, vol.15
, Issue.5
, pp. 491-506
-
-
Ross, W.1
Ernst, A.2
Gourse, R.L.3
-
29
-
-
0032893557
-
Occurrence of sialic acids in healthy humans and different disorders
-
Sillanaukee P, Pönniö M, Jääskeläinen IP (1999) Occurrence of sialic acids in healthy humans and different disorders. Eur J Clin Invest 29(5):413-425.
-
(1999)
Eur J Clin Invest
, vol.29
, Issue.5
, pp. 413-425
-
-
Sillanaukee, P.1
Pönniö, M.2
Jääskeläinen, I.P.3
-
30
-
-
0036855374
-
Characterization of a novel Vibrio pathogenicity island (VPI-2) encoding neuraminidase (nanH) among toxigenic Vibrio cholerae isolates
-
Jermyn WS, Boyd EF (2002) Characterization of a novel Vibrio pathogenicity island (VPI-2) encoding neuraminidase (nanH) among toxigenic Vibrio cholerae isolates. Microbiology 148(Pt 11):3681-3693.
-
(2002)
Microbiology
, vol.148
, Issue.PART 11
, pp. 3681-3693
-
-
Jermyn, W.S.1
Boyd, E.F.2
-
31
-
-
0032932006
-
The SIS domain: A phosphosugar-binding domain
-
Bateman A (1999) The SIS domain: A phosphosugar-binding domain. Trends Biochem Sci 24(3):94-95.
-
(1999)
Trends Biochem Sci
, vol.24
, Issue.3
, pp. 94-95
-
-
Bateman, A.1
-
32
-
-
66149087332
-
Sialic acid (N-acetyl neuraminic acid) utilization by Bacteroides fragilis requires a novel N-acetyl mannosamine epimerase
-
Brigham C, et al. (2009) Sialic acid (N-acetyl neuraminic acid) utilization by Bacteroides fragilis requires a novel N-acetyl mannosamine epimerase. J Bacteriol 191(11):3629-3638.
-
(2009)
J Bacteriol
, vol.191
, Issue.11
, pp. 3629-3638
-
-
Brigham, C.1
-
33
-
-
0033082686
-
Overcoming expression and purification problems of RhoGDI using a family of "parallel" expression vectors
-
Sheffield P, Garrard S, Derewenda Z (1999) Overcoming expression and purification problems of RhoGDI using a family of "parallel" expression vectors. Protein Expr Purif 15(1):34-39.
-
(1999)
Protein Expr Purif
, vol.15
, Issue.1
, pp. 34-39
-
-
Sheffield, P.1
Garrard, S.2
Derewenda, Z.3
-
34
-
-
3142564584
-
The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae
-
Lenz DH, et al. (2004) The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae. Cell 118(1):69-82.
-
(2004)
Cell
, vol.118
, Issue.1
, pp. 69-82
-
-
Lenz, D.H.1
-
35
-
-
0023892552
-
A novel suicide vector and its use in construction of insertion mutations: Osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR
-
Miller VL, Mekalanos JJ (1988) A novel suicide vector and its use in construction of insertion mutations: Osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR. J Bacterial 170(6):2575-2583.
-
(1988)
J Bacterial
, vol.170
, Issue.6
, pp. 2575-2583
-
-
Miller, V.L.1
Mekalanos, J.J.2
-
36
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko KA, Wanner BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97(12):6640-6645.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.12
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
37
-
-
0031059866
-
Processing of x-ray diffraction data collected in oscillation mode
-
Otwinowski Z, Minor W (1997) Processing of x-ray diffraction data collected in oscillation mode. Methods Enzymol 276:307-326.
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
39
-
-
0035210945
-
Maximum-likelihood densitymodification using pattern recognition of structural motifs
-
Terwilliger TC (2001)Maximum-likelihood densitymodification using pattern recognition of structural motifs. Acta Crystallogr D Biol Crystallogr 57(Pt 12):1755-1762.
-
(2001)
Acta Crystallogr D Biol Crystallogr
, vol.57
, Issue.PART 12
, pp. 1755-1762
-
-
Terwilliger, T.C.1
-
40
-
-
0000560808
-
MOLREP: An automated programformolecular replacement
-
Vagin A, Teplyakov A (1997)MOLREP: An automated programformolecular replacement. J Appl Cryst 30:1022-1025.
-
(1997)
J Appl Cryst
, vol.30
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
41
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley P, Cowtan K (2004) Coot: Model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60(Pt 12 Pt 1):2126-2132.
-
(2004)
Acta Crystallogr D Biol Crystallogr
, vol.60
, Issue.PART 12 PART 1
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
43
-
-
0027169515
-
Main-chain bond lengths and bond angles in protein structures
-
Laskowski RA, Moss DS, Thornton JM (1993) Main-chain bond lengths and bond angles in protein structures. J Mol Biol 231(4):1049-1067.
-
(1993)
J Mol Biol
, vol.231
, Issue.4
, pp. 1049-1067
-
-
Laskowski, R.A.1
Moss, D.S.2
Thornton, J.M.3
-
44
-
-
47049110451
-
Head-head and head-tail interaction: A general mechanism for switching off myosin II activity in cells
-
Jung HS, Komatsu S, Ikebe M, Craig R (2008) Head-head and head-tail interaction: A general mechanism for switching off myosin II activity in cells. Mol Biol Cell 19(8): 3234-3242.
-
(2008)
Mol Biol Cell
, vol.19
, Issue.8
, pp. 3234-3242
-
-
Jung, H.S.1
Komatsu, S.2
Ikebe, M.3
Craig, R.4
-
45
-
-
43149115617
-
Conservation of the regulated structure of folded myosin 2 in species separated by at least 600 million years of independent evolution
-
Jung HS, et al. (2008) Conservation of the regulated structure of folded myosin 2 in species separated by at least 600 million years of independent evolution. Proc Natl Acad Sci USA 105(16):6022-6026.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.16
, pp. 6022-6026
-
-
Jung, H.S.1
-
46
-
-
4444221565
-
UCSF Chimera-A visualization system for exploratory research and analysis
-
Pettersen EF, et al. (2004) UCSF Chimera-A visualization system for exploratory research and analysis. J Comput Chem 25(13):1605-1612.
-
(2004)
J Comput Chem
, vol.25
, Issue.13
, pp. 1605-1612
-
-
Pettersen, E.F.1
-
47
-
-
69449102917
-
Innovations in host and microbial sialic acid biosynthesis revealed by phylogenomic prediction of nonulosonic acid structure
-
Lewis AL, et al. (2009) Innovations in host and microbial sialic acid biosynthesis revealed by phylogenomic prediction of nonulosonic acid structure. Proc Natl Acad Sci USA 106(32):13552-13557.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.32
, pp. 13552-13557
-
-
Lewis, A.L.1
-
48
-
-
80052619793
-
Genomic and metabolic profiling of nonulosonic acids in Vibrionaceae reveal biochemical phenotypes of allelic divergence in Vibrio vulnificus
-
Lewis AL, et al. (2011) Genomic and metabolic profiling of nonulosonic acids in Vibrionaceae reveal biochemical phenotypes of allelic divergence in Vibrio vulnificus. Appl Environ Microbiol 77(16):5782-5793.
-
(2011)
Appl Environ Microbiol
, vol.77
, Issue.16
, pp. 5782-5793
-
-
Lewis, A.L.1
|