-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0036462606
-
Chemical diversity in the sialic acids and related alpha-keto acids: An evolutionary perspective
-
Angata, T., and A. Varki. 2002. Chemical diversity in the sialic acids and related alpha-keto acids: an evolutionary perspective. Chem. Rev. 102:439-469.
-
(2002)
Chem. Rev.
, vol.102
, pp. 439-469
-
-
Angata, T.1
Varki, A.2
-
3
-
-
0036837766
-
Recognition of DNA by Fur: A reinterpretation of the Fur box consensus sequence
-
Baichoo, N., and J. D. Helmann. 2002. Recognition of DNA by Fur: a reinterpretation of the Fur box consensus sequence. J. Bacteriol. 184:5826-5832.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 5826-5832
-
-
Baichoo, N.1
Helmann, J.D.2
-
4
-
-
0036583638
-
Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator
-
Blanco, A. G., M. Sola, F. X. Gomis-Ruth, and M. Coll. 2002. Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator. Structure 10:701-713.
-
(2002)
Structure
, vol.10
, pp. 701-713
-
-
Blanco, A.G.1
Sola, M.2
Gomis-Ruth, F.X.3
Coll, M.4
-
5
-
-
0027275485
-
The winged-helix DNA-binding motif: Another helix-turn-helix takeoff
-
Brennan, R. G. 1993. The winged-helix DNA-binding motif: another helix-turn-helix takeoff. Cell 74:773-776.
-
(1993)
Cell
, vol.74
, pp. 773-776
-
-
Brennan, R.G.1
-
6
-
-
0343867206
-
The histidine tail of recombinant DNA binding proteins may influence the quality of interaction with DNA
-
Buning, H., U. Gartner, D. von Schack, P. A. Baeuerle, and H. Zorbas. 1996. The histidine tail of recombinant DNA binding proteins may influence the quality of interaction with DNA. Anal. Biochem. 234:227-230.
-
(1996)
Anal. Biochem.
, vol.234
, pp. 227-230
-
-
Buning, H.1
Gartner, U.2
Von Schack, D.3
Baeuerle, P.A.4
Zorbas, H.5
-
7
-
-
0032698634
-
Transcription activation by catabolite activator protein (CAP)
-
Busby, S., and R. H. Ebright. 1999. Transcription activation by catabolite activator protein (CAP). J. Mol. Biol. 293:199-213.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 199-213
-
-
Busby, S.1
Ebright, R.H.2
-
8
-
-
0026346185
-
Gel retardation
-
Carey, J. 1991. Gel retardation. Methods Enzymol. 208:103-112.
-
(1991)
Methods Enzymol.
, vol.208
, pp. 103-112
-
-
Carey, J.1
-
9
-
-
0003455674
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Davis, R. W., D. Botstein, and J. R. Roth. 1980. A manual for genetic engineering: advanced bacterial genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1980)
A Manual for Genetic Engineering: Advanced Bacterial Genetics
-
-
Davis, R.W.1
Botstein, D.2
Roth, J.R.3
-
10
-
-
0020624961
-
Configuration of substrate and products of N-acetylneuraminate pyruvate-lyase from Clostridium perfringens
-
Deijl, C. M., and J. F. Vliegenthart. 1983. Configuration of substrate and products of N-acetylneuraminate pyruvate-lyase from Clostridium perfringens. Biochem. Biophys. Res. Commun. 111:668-674.
-
(1983)
Biochem. Biophys. Res. Commun.
, vol.111
, pp. 668-674
-
-
Deijl, C.M.1
Vliegenthart, J.F.2
-
11
-
-
0001522673
-
Starch-gel electrophoresis-application to the classification of pituitary proteins and polypeptides
-
Ferguson, K. 1964. Starch-gel electrophoresis-application to the classification of pituitary proteins and polypeptides. Metabolism 13:985-1002.
-
(1964)
Metabolism
, vol.13
, pp. 985-1002
-
-
Ferguson, K.1
-
12
-
-
0024323026
-
Measurement of protein-DNA interaction parameters by electrophoresis mobility shift assay
-
Fried, M. G. 1989. Measurement of protein-DNA interaction parameters by electrophoresis mobility shift assay. Electrophoresis 10:366-376.
-
(1989)
Electrophoresis
, vol.10
, pp. 366-376
-
-
Fried, M.G.1
-
14
-
-
0029018327
-
Tight regulation, modulation, and high-level expression by vectors containing the arabinose pBAD promoter
-
Guzman, L. M., D. Belin, M. J. Carson, and J. Beckwith. 1995. Tight regulation, modulation, and high-level expression by vectors containing the arabinose pBAD promoter. J. Bacteriol. 177:4121-4130.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 4121-4130
-
-
Guzman, L.M.1
Belin, D.2
Carson, M.J.3
Beckwith, J.4
-
15
-
-
0028875660
-
Tandem binding of six OmpR proteins to the ompF upstream regulatory sequence of Escherichia coli
-
Harlocker, S. L., L. Bergstrom, and M. Inouye. 1995. Tandem binding of six OmpR proteins to the ompF upstream regulatory sequence of Escherichia coli. J. Biol. Chem. 270:26849-26856.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 26849-26856
-
-
Harlocker, S.L.1
Bergstrom, L.2
Inouye, M.3
-
16
-
-
0033555689
-
Orientation of OmpR monomers within an OmpR:DNA complex determined by DNA affinity cleaving
-
Harrison-McMonagle, P., N. Denissova, E. Martinez-Hackert, R. H. Ebright, and A. M. Stock. 1999. Orientation of OmpR monomers within an OmpR:DNA complex determined by DNA affinity cleaving. J. Mol. Biol. 285:555-566.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 555-566
-
-
Harrison-McMonagle, P.1
Denissova, N.2
Martinez-Hackert, E.3
Ebright, R.H.4
Stock, A.M.5
-
17
-
-
0025905579
-
A new family of bacterial regulatory proteins
-
Hayden, D. J., and J. R. Guest. 1991. A new family of bacterial regulatory proteins. FEMS Microbiol. Lett. 79:291-296.
-
(1991)
FEMS Microbiol. Lett.
, vol.79
, pp. 291-296
-
-
Hayden, D.J.1
Guest, J.R.2
-
18
-
-
0036468362
-
Prokaryotic transcription regulators: More than just the helix-turn-helix motif
-
Huffman, J. L., and R. G. Brennan. 2002. Prokaryotic transcription regulators: more than just the helix-turn-helix motif. Curr. Opin. Struct. Biol. 12:98-106.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 98-106
-
-
Huffman, J.L.1
Brennan, R.G.2
-
19
-
-
0036415664
-
Fur-DNA interactions at the bidirectional fepDGC-entS promoter region in Escherichia coli
-
Lavrrar, J. L., C. A. Christoffersen, and M. A. McIntosh. 2002. Fur-DNA interactions at the bidirectional fepDGC-entS promoter region in Escherichia coli. J. Mol. Biol. 322:983-995.
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 983-995
-
-
Lavrrar, J.L.1
Christoffersen, C.A.2
McIntosh, M.A.3
-
20
-
-
0029938053
-
Crystal structure of the lactose operon repressor and its complexes with DNA and inducer
-
Lewis, M., G. Chang, N. C. Horton, M. A. Kercher, H. C. Pace, M. A. Schumacher, R. G. Brennan, and P. Lu. 1996. Crystal structure of the lactose operon repressor and its complexes with DNA and inducer. Science 271:1247-1254.
-
(1996)
Science
, vol.271
, pp. 1247-1254
-
-
Lewis, M.1
Chang, G.2
Horton, N.C.3
Kercher, M.A.4
Pace, H.C.5
Schumacher, M.A.6
Brennan, R.G.7
Lu, P.8
-
21
-
-
0003785155
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1972)
Experiments in Molecular Genetics
-
-
Miller, J.H.1
-
22
-
-
0028365289
-
Quality and position of the three lac operators of E. coli define efficiency of repression
-
Oehler, S., M. Amouyal, P. Kolkhof, B. von Wilcken-Bergmann, and B. Muller-Hill. 1994. Quality and position of the three lac operators of E. coli define efficiency of repression. EMBO J. 13:3348-3355.
-
(1994)
EMBO J.
, vol.13
, pp. 3348-3355
-
-
Oehler, S.1
Amouyal, M.2
Kolkhof, P.3
Von Wilcken-Bergmann, B.4
Muller-Hill, B.5
-
23
-
-
0022429765
-
Complete nucleotide sequence of the E. coli N-acetylneuraminate lyase
-
Ohta, Y., K. Watanabe, and A. Kimura. 1985. Complete nucleotide sequence of the E. coli N-acetylneuraminate lyase. Nucleic Acids Res. 13:8843-8852.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 8843-8852
-
-
Ohta, Y.1
Watanabe, K.2
Kimura, A.3
-
24
-
-
0030998034
-
Protein-induced fit: The CRP activator protein changes sequence-specific DNA recognition by the CytR repressor, a highly flexible LacI member
-
Pedersen, H., and P. Valentin-Hansen. 1997. Protein-induced fit: the CRP activator protein changes sequence-specific DNA recognition by the CytR repressor, a highly flexible LacI member. EMBO J. 16:2108-2118.
-
(1997)
EMBO J.
, vol.16
, pp. 2108-2118
-
-
Pedersen, H.1
Valentin-Hansen, P.2
-
25
-
-
0031973888
-
Control of the expression of the manXYZ operon in Escherichia coli: Mlc is a negative regulator of the mannose PTS
-
Plumbridge, J. 1998. Control of the expression of the manXYZ operon in Escherichia coli: Mlc is a negative regulator of the mannose PTS. Mol. Microbiol. 27:369-380.
-
(1998)
Mol. Microbiol.
, vol.27
, pp. 369-380
-
-
Plumbridge, J.1
-
26
-
-
0032929297
-
Convergent pathways for utilization of the amino sugars N-acetylglucosamine, N-acetylmannosamine, and N-acetylneuraminic acid by Escherichia coli
-
Plumbridge, J., and E. Vimr. 1999. Convergent pathways for utilization of the amino sugars N-acetylglucosamine, N-acetylmannosamine, and N-acetylneuraminic acid by Escherichia coli. J. Bacteriol. 181:47-54.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 47-54
-
-
Plumbridge, J.1
Vimr, E.2
-
27
-
-
0344321893
-
Architecture of a protein central to iron homeostasis: Crystal structure and spectroscopic analysis of the ferric uptake regulator
-
Pohl, E., J. C. Haller, A. Mijovilovich, W. Meyer-Klaucke, E. Garman, and M. L. Vasil. 2003. Architecture of a protein central to iron homeostasis: crystal structure and spectroscopic analysis of the ferric uptake regulator. Mol. Microbiol. 47:903-915.
-
(2003)
Mol. Microbiol.
, vol.47
, pp. 903-915
-
-
Pohl, E.1
Haller, J.C.2
Mijovilovich, A.3
Meyer-Klaucke, W.4
Garman, E.5
Vasil, M.L.6
-
28
-
-
0000868851
-
Crystal structure of a cobalt-activated diphtheria toxin repressor-DNA complex reveals a metal-binding SH3-like domain
-
Pohl, E., R. K. Holmes, and W. G. Hol. 1999. Crystal structure of a cobalt-activated diphtheria toxin repressor-DNA complex reveals a metal-binding SH3-like domain. J. Mol. Biol. 292:653-667.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 653-667
-
-
Pohl, E.1
Holmes, R.K.2
Hol, W.G.3
-
29
-
-
0037066712
-
Subdivision of the helix-turn-helix GntR family of bacterial regulators in the Fad, HutC, MocR, and YtrA subfamilies
-
Rigali, S., A. Derouaux, F. Giannotta, and J. Dusart. 2002. Subdivision of the helix-turn-helix GntR family of bacterial regulators in the FadR, HutC, MocR, and YtrA subfamilies. J. Biol. Chem. 277:12507-12515.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 12507-12515
-
-
Rigali, S.1
Derouaux, A.2
Giannotta, F.3
Dusart, J.4
-
30
-
-
0034924988
-
Redirection of sialic acid metabolism in genetically engineered Escherichia coli
-
Ringenberg, M., C. Lichtensteiger, and E. Vimr. 2001. Redirection of sialic acid metabolism in genetically engineered Escherichia coli. Glycobiology 11:533-539.
-
(2001)
Glycobiology
, vol.11
, pp. 533-539
-
-
Ringenberg, M.1
Lichtensteiger, C.2
Vimr, E.3
-
31
-
-
0034444960
-
Achievements and challenges of sialic acid research
-
Schauer, R. 2000. Achievements and challenges of sialic acid research. Glycoconj. J. 17:485-499.
-
(2000)
Glycoconj. J.
, vol.17
, pp. 485-499
-
-
Schauer, R.1
-
32
-
-
0025914242
-
Crystal structure of a CAP-DNA complex: The DNA is bent by 90 degrees
-
Schultz, S. C., G. C. Shields, and T. A. Steitz. 1991. Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees. Science 253:1001-1007.
-
(1991)
Science
, vol.253
, pp. 1001-1007
-
-
Schultz, S.C.1
Shields, G.C.2
Steitz, T.A.3
-
33
-
-
0023255472
-
Improved single and multicopy lac-based cloning vectors for protein and operon fusions
-
Simons, R. W., F. Houman, and N. Kleckner. 1987. Improved single and multicopy lac-based cloning vectors for protein and operon fusions. Gene 53:85-96.
-
(1987)
Gene
, vol.53
, pp. 85-96
-
-
Simons, R.W.1
Houman, F.2
Kleckner, N.3
-
34
-
-
0035901537
-
The structural basis of acyl coenzyme A-dependent regulation of the transcription factor FadR
-
van Aalten, D. M., C. C. DiRusso, and J. Knudsen. 2001. The structural basis of acyl coenzyme A-dependent regulation of the transcription factor FadR. EMBO J. 20:2041-2050.
-
(2001)
EMBO J.
, vol.20
, pp. 2041-2050
-
-
Van Aalten, D.M.1
DiRusso, C.C.2
Knudsen, J.3
-
35
-
-
0034597011
-
Crystal structure of FadR, a fatty acid-responsive transcription factor with a novel acyl coenzyme A-binding fold
-
van Aalten, D. M., C. C. DiRusso, J. Knudsen, and R. K. Wierenga. 2000. Crystal structure of FadR, a fatty acid-responsive transcription factor with a novel acyl coenzyme A-binding fold. EMBO J. 19:5167-5177.
-
(2000)
EMBO J.
, vol.19
, pp. 5167-5177
-
-
Van Aalten, D.M.1
DiRusso, C.C.2
Knudsen, J.3
Wierenga, R.K.4
-
36
-
-
0036603821
-
To sialylate, or not to sialylate: That is the question
-
Vimr, E., and C. Lichtensteiger. 2002. To sialylate, or not to sialylate: that is the question. Trends Microbiol. 10:254-257.
-
(2002)
Trends Microbiol.
, vol.10
, pp. 254-257
-
-
Vimr, E.1
Lichtensteiger, C.2
-
37
-
-
0034128207
-
Sialic acid metabolism's dual function in Haemophilus influenzae
-
Vimr, E., C. Lichtensteiger, and S. Steenbergen. 2000. Sialic acid metabolism's dual function in Haemophilus influenzae. Mol. Microbiol. 36:1113-1123.
-
(2000)
Mol. Microbiol.
, vol.36
, pp. 1113-1123
-
-
Vimr, E.1
Lichtensteiger, C.2
Steenbergen, S.3
-
38
-
-
0022346257
-
Identification of an inducible catabolic system for sialic acids (nan) in Escherichia coli
-
Vimr, E. R., and F. A. Troy. 1985. Identification of an inducible catabolic system for sialic acids (nan) in Escherichia coli. J. Bacteriol. 164:845-853.
-
(1985)
J. Bacteriol.
, vol.164
, pp. 845-853
-
-
Vimr, E.R.1
Troy, F.A.2
-
39
-
-
0022344062
-
Regulation of sialic acid metabolism in Escherichia coli: Role of N-acylneuraminate pyruvate-lyase
-
Vimr, E. R., and F. A. Troy. 1985. Regulation of sialic acid metabolism in Escherichia coli: role of N-acylneuraminate pyruvate-lyase. J. Bacteriol. 164:854-860.
-
(1985)
J. Bacteriol.
, vol.164
, pp. 854-860
-
-
Vimr, E.R.1
Troy, F.A.2
-
40
-
-
0032581662
-
Structure of the metal-ion-activated diphtheria toxin repressor/tox operator complex
-
White, A., X. Ding, J. C. vanderSpek, J. R. Murphy, and D. Ringe. 1998. Structure of the metal-ion-activated diphtheria toxin repressor/tox operator complex. Nature 394:502-506.
-
(1998)
Nature
, vol.394
, pp. 502-506
-
-
White, A.1
Ding, X.2
VanderSpek, J.C.3
Murphy, J.R.4
Ringe, D.5
-
41
-
-
0035907285
-
The FadR.DNA complex. Transcriptional control of fatty acid metabolism in Escherichia coli
-
Xu, Y., R. J. Heath, Z. Li, C. O. Rock, and S. W. White. 2001. The FadR.DNA complex. Transcriptional control of fatty acid metabolism in Escherichia coli. J. Biol. Chem. 276:17373-17379.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 17373-17379
-
-
Xu, Y.1
Heath, R.J.2
Li, Z.3
Rock, C.O.4
White, S.W.5
|