메뉴 건너뛰기




Volumn 8, Issue 7, 2013, Pages

Systems Biology Analysis of Zymomonas mobilis ZM4 Ethanol Stress Responses

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL; CHAPERONE;

EID: 84880487156     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0068886     Document Type: Article
Times cited : (59)

References (73)
  • 2
    • 77949872908 scopus 로고    scopus 로고
    • Techno-economic analysis of lignocellulosic ethanol: A review
    • Gnansounou E, Dauriat A, (2010) Techno-economic analysis of lignocellulosic ethanol: A review. Bioresource Technol 101: 4980-4991.
    • (2010) Bioresource Technol , vol.101 , pp. 4980-4991
    • Gnansounou, E.1    Dauriat, A.2
  • 4
    • 33947380509 scopus 로고    scopus 로고
    • Cellulosic ethanol: Biofuel researchers prepare to reap a new harvest
    • Service RF (2007) Cellulosic ethanol: Biofuel researchers prepare to reap a new harvest. Science 315: 1488-1491.
    • (2007) Science , vol.315 , pp. 1488-1491
    • Service, R.F.1
  • 5
    • 33846950348 scopus 로고    scopus 로고
    • Challenges in engineering microbes for biofuels production
    • Stephanopoulos G, (2007) Challenges in engineering microbes for biofuels production. Science 315: 801-804.
    • (2007) Science , vol.315 , pp. 801-804
    • Stephanopoulos, G.1
  • 6
    • 0942288120 scopus 로고    scopus 로고
    • Bacteria engineered for fuel ethanol production: current status
    • Dien BS, Cotta MA, Jeffries TW, (2003) Bacteria engineered for fuel ethanol production: current status. Appl Microbiol Biotechnol 63: 258-266.
    • (2003) Appl Microbiol Biotechnol , vol.63 , pp. 258-266
    • Dien, B.S.1    Cotta, M.A.2    Jeffries, T.W.3
  • 7
    • 0001889092 scopus 로고    scopus 로고
    • Ethanol fermentation technology - Zymomonas mobilis
    • Gunasekaran P, Raj KC, (1999) Ethanol fermentation technology- Zymomonas mobilis. Curr Sci 77: 56-68.
    • (1999) Curr Sci , vol.77 , pp. 56-68
    • Gunasekaran, P.1    Raj, K.C.2
  • 11
    • 0017361914 scopus 로고
    • The biology of Zymomonas mobilis
    • Swings J, De Ley J, (1977) The biology of Zymomonas mobilis. Bacteriol Rev 41: 1-46.
    • (1977) Bacteriol Rev , vol.41 , pp. 1-46
    • Swings, J.1    De Ley, J.2
  • 12
    • 0029910097 scopus 로고    scopus 로고
    • Development of an arabinose-fermenting Zymomonas mobilis strain by metabolic pathway engineering
    • Deanda K, Zhang M, Eddy C, Picataggio S, (1996) Development of an arabinose-fermenting Zymomonas mobilis strain by metabolic pathway engineering. Appl Environ Microbiol 62: 4465-4470.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 4465-4470
    • Deanda, K.1    Zhang, M.2    Eddy, C.3    Picataggio, S.4
  • 13
    • 0028953195 scopus 로고
    • Metabolic engineering of a pentose metabolism pathway in ethanologenic Zymomonas mobilis
    • Zhang M, Eddy C, Deanda K, Finkestein M, Picataggio S, (1995) Metabolic engineering of a pentose metabolism pathway in ethanologenic Zymomonas mobilis. Science 267: 240-243.
    • (1995) Science , vol.267 , pp. 240-243
    • Zhang, M.1    Eddy, C.2    Deanda, K.3    Finkestein, M.4    Picataggio, S.5
  • 14
    • 70349959827 scopus 로고    scopus 로고
    • Improved genome annotation for Zymomonas mobilis Nat Biotechnol
    • Yang S, Pappas KM, Hauser LJ, Land ML, Chen, et al, (2009) Improved genome annotation for Zymomonas mobilis Nat Biotechnol. 27: 893-894.
    • (2009) , vol.27 , pp. 893-894
    • Yang, S.1    Pappas, K.M.2    Hauser, L.J.3    Land, M.L.4    Chen5
  • 15
    • 78751658356 scopus 로고    scopus 로고
    • Genome-scale modeling and in silico analysis of ethanologenic bacteria Zymomonas mobilis
    • Widiastuti H, Kim JY, Selvarasu S, Karimi IA, Kim H, et al. (2010) Genome-scale modeling and in silico analysis of ethanologenic bacteria Zymomonas mobilis. Biotechnol Bioeng 108: 655-665.
    • (2010) Biotechnol Bioeng , vol.108 , pp. 655-665
    • Widiastuti, H.1    Kim, J.Y.2    Selvarasu, S.3    Karimi, I.A.4    Kim, H.5
  • 16
    • 78549287163 scopus 로고    scopus 로고
    • The genome-scale metabolic network analysis of Zymomonas mobilis ZM4 explains physiological features and suggests ethanol and succinic acid production strategies
    • Lee KY, Park JM, Kim TY, Yun H, Lee SY, (2010) The genome-scale metabolic network analysis of Zymomonas mobilis ZM4 explains physiological features and suggests ethanol and succinic acid production strategies. Microb Cell Fact 9: 94.
    • (2010) Microb Cell Fact , vol.9 , pp. 94
    • Lee, K.Y.1    Park, J.M.2    Kim, T.Y.3    Yun, H.4    Lee, S.Y.5
  • 17
    • 80052552875 scopus 로고    scopus 로고
    • Genome sequence of the ethanol-producing Zymomonas mobilis subsp pomaceae lectotype strain ATCC 29192
    • Kouvelis VN, Davenport KW, Brettin TS, Bruce D, Detter C, et al. (2011) Genome sequence of the ethanol-producing Zymomonas mobilis subsp pomaceae lectotype strain ATCC 29192. J Bacteriol 193: 5049-5050.
    • (2011) J Bacteriol , vol.193 , pp. 5049-5050
    • Kouvelis, V.N.1    Davenport, K.W.2    Brettin, T.S.3    Bruce, D.4    Detter, C.5
  • 18
    • 70350449235 scopus 로고    scopus 로고
    • Complete genome sequence of the ethanol producer Zymomonas mobilis NCIMB 11163
    • Kouvelis VN, Saunders E, Brettin TS, Bruce D, Detter C, et al. (2009) Complete genome sequence of the ethanol producer Zymomonas mobilis NCIMB 11163. J Bacteriol 191: 7140-7141.
    • (2009) J Bacteriol , vol.191 , pp. 7140-7141
    • Kouvelis, V.N.1    Saunders, E.2    Brettin, T.S.3    Bruce, D.4    Detter, C.5
  • 19
    • 80052550947 scopus 로고    scopus 로고
    • Genome sequence of the ethanol-producing Zymomonas mobilis subsp mobilis lectotype strain ATCC 10988
    • Pappas KM, Kouvelis VN, Saunders E, Brettin TS, Bruce D, et al. (2011) Genome sequence of the ethanol-producing Zymomonas mobilis subsp mobilis lectotype strain ATCC 10988. J Bacteriol 193: 5051-5052.
    • (2011) J Bacteriol , vol.193 , pp. 5051-5052
    • Pappas, K.M.1    Kouvelis, V.N.2    Saunders, E.3    Brettin, T.S.4    Bruce, D.5
  • 20
    • 78049292737 scopus 로고    scopus 로고
    • Heterologous expression and extracellular secretion of cellulolytic enzymes by Zymomonas mobilis
    • Linger JG, Adney WS, Darzins A, (2010) Heterologous expression and extracellular secretion of cellulolytic enzymes by Zymomonas mobilis. Appl Environ Microbiol 76: 6360-6369.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 6360-6369
    • Linger, J.G.1    Adney, W.S.2    Darzins, A.3
  • 22
    • 77953738245 scopus 로고    scopus 로고
    • Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae
    • Yang S, Land ML, Klingeman DM, Pelletier DA, Lu T-YS, et al. (2010) Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae. Proc Natl Acad Sci USA 107: 10395-10400.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 10395-10400
    • Yang, S.1    Land, M.L.2    Klingeman, D.M.3    Pelletier, D.A.4    Lu, T.-Y.S.5
  • 23
    • 61949193780 scopus 로고    scopus 로고
    • Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations
    • Yang S, Tschaplinski TJ, Engle NL, Carroll SL, Martin SL, et al. (2009) Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations. BMC Genomics 10: 34.
    • (2009) BMC Genomics , vol.10 , pp. 34
    • Yang, S.1    Tschaplinski, T.J.2    Engle, N.L.3    Carroll, S.L.4    Martin, S.L.5
  • 24
    • 84861999245 scopus 로고    scopus 로고
    • Transcriptome profiling of Zymomonas mobilis under furfural stress
    • He MX, Wu B, Shui ZX, Hu QC, Wang WG, et al. (2012) Transcriptome profiling of Zymomonas mobilis under furfural stress. Appl Microbiol Biotechnol 95: 189-199.
    • (2012) Appl Microbiol Biotechnol , vol.95 , pp. 189-199
    • He, M.X.1    Wu, B.2    Shui, Z.X.3    Hu, Q.C.4    Wang, W.G.5
  • 25
    • 84869013121 scopus 로고    scopus 로고
    • Transcriptome profiling of Zymomonas mobilis under ethanol stress
    • He MX, Wu B, Shui ZX, Hu QC, Wang WG, et al. (2012) Transcriptome profiling of Zymomonas mobilis under ethanol stress. Biotechnol Biofuels 5: 75.
    • (2012) Biotechnol Biofuels , vol.5 , pp. 75
    • He, M.X.1    Wu, B.2    Shui, Z.X.3    Hu, Q.C.4    Wang, W.G.5
  • 26
    • 85172036962 scopus 로고    scopus 로고
    • Electron transport and oxidative stress in Zymomonas mobilis respiratory mutants
    • DOI 10.1007/s00203-00011-00785-00207
    • Strazdina I, Kravale Z, Galinina N, Rutkis R, Poole R, et al. (2112) Electron transport and oxidative stress in Zymomonas mobilis respiratory mutants. Arch Microbiol: DOI 10.1007/s00203-00011-00785-00207.
    • Arch Microbiol
    • Strazdina, I.1    Kravale, Z.2    Galinina, N.3    Rutkis, R.4    Poole, R.5
  • 27
    • 85028122323 scopus 로고    scopus 로고
    • The Zymomonas mobilis regulator hfq contributes to tolerance against multiple lignocellulosic pretreatment inhibitors
    • Yang SH, Pelletier DA, Lu TYS, Brown SD, (2010) The Zymomonas mobilis regulator hfq contributes to tolerance against multiple lignocellulosic pretreatment inhibitors. BMC Microbiol 10: 135.
    • (2010) BMC Microbiol , vol.10 , pp. 135
    • Yang, S.H.1    Pelletier, D.A.2    Lu, T.Y.S.3    Brown, S.D.4
  • 28
    • 77954993979 scopus 로고    scopus 로고
    • irrE, an exogenous gene from Deinococcus radiodurans, improves the growth of and ethanol production by a Zymomonas mobilis strain under ethanol and acid stress
    • Zhang Y, Ma R, Zhao Z, Zhou Z, Lu W, et al. (2010) irrE, an exogenous gene from Deinococcus radiodurans, improves the growth of and ethanol production by a Zymomonas mobilis strain under ethanol and acid stress. J Microbiol Biotechnol 20: 1156-1162.
    • (2010) J Microbiol Biotechnol , vol.20 , pp. 1156-1162
    • Zhang, Y.1    Ma, R.2    Zhao, Z.3    Zhou, Z.4    Lu, W.5
  • 29
    • 71249083129 scopus 로고    scopus 로고
    • Tolerance and stress response to ethanol in the yeast Saccharomyces cerevisiae
    • Ding J, Huang X, Zhang L, Zhao N, Yang D, et al. (2009) Tolerance and stress response to ethanol in the yeast Saccharomyces cerevisiae. Appl Microbiol Biotechnol 85: 253-263.
    • (2009) Appl Microbiol Biotechnol , vol.85 , pp. 253-263
    • Ding, J.1    Huang, X.2    Zhang, L.3    Zhao, N.4    Yang, D.5
  • 30
  • 31
    • 0025115111 scopus 로고
    • Ethanol tolerance in bacteria
    • Ingram LO, (1990) Ethanol tolerance in bacteria. Crit Rev Biotechnol 9: 305-319.
    • (1990) Crit Rev Biotechnol , vol.9 , pp. 305-319
    • Ingram, L.O.1
  • 32
    • 0024730975 scopus 로고
    • Prokaryotic triterpenoids. A novel hopanoid from the ethanol-producing bacterium Zymomonas mobilis
    • Flesch G, Rohmer M, (1989) Prokaryotic triterpenoids. A novel hopanoid from the ethanol-producing bacterium Zymomonas mobilis. Biochem J 262: 673-675.
    • (1989) Biochem J , vol.262 , pp. 673-675
    • Flesch, G.1    Rohmer, M.2
  • 33
    • 0026077523 scopus 로고
    • Content and composition of hopanoids in Zymomonas mobilis under various growth conditions
    • Hermans MA, Neuss B, Sahm H, (1991) Content and composition of hopanoids in Zymomonas mobilis under various growth conditions. J Bacteriol 173: 5592-5595.
    • (1991) J Bacteriol , vol.173 , pp. 5592-5595
    • Hermans, M.A.1    Neuss, B.2    Sahm, H.3
  • 34
    • 0025730267 scopus 로고
    • Effect of azasqualene on hopanoid biosynthesis and ethanol tolerance of Zymomonas mobilis
    • Horbach S, Neuss B, Sahm H, (1991) Effect of azasqualene on hopanoid biosynthesis and ethanol tolerance of Zymomonas mobilis. FEMS Microbiol Lett 79: 347-350.
    • (1991) FEMS Microbiol Lett , vol.79 , pp. 347-350
    • Horbach, S.1    Neuss, B.2    Sahm, H.3
  • 36
    • 70349088644 scopus 로고    scopus 로고
    • Hopanoids play a role in membrane integrity and pH homeostasis in Rhodopseudomonas palustris TIE-1
    • Welander PV, Hunter RC, Zhang LC, Sessions AL, Summons RE, et al. (2009) Hopanoids play a role in membrane integrity and pH homeostasis in Rhodopseudomonas palustris TIE-1. J Bacteriol 191: 6145-6156.
    • (2009) J Bacteriol , vol.191 , pp. 6145-6156
    • Welander, P.V.1    Hunter, R.C.2    Zhang, L.C.3    Sessions, A.L.4    Summons, R.E.5
  • 37
    • 0030793988 scopus 로고    scopus 로고
    • The effect of ethanol and oxygen on the growth of Zymomonas mobilis and the levels of hopanoids and other membrane lipids
    • Moreau RA, Powell MJ, Fett WF, Whitaker BD, (1997) The effect of ethanol and oxygen on the growth of Zymomonas mobilis and the levels of hopanoids and other membrane lipids. Curr Microbiol 35: 124-128.
    • (1997) Curr Microbiol , vol.35 , pp. 124-128
    • Moreau, R.A.1    Powell, M.J.2    Fett, W.F.3    Whitaker, B.D.4
  • 38
    • 0026015261 scopus 로고
    • Gel electrophoretic analysis of Zymomonas mobilis glycolytic and fermentative enzymes: identification of alcohol dehydrogenase II as a stress protein
    • An H, Scopes RK, Rodriguez M, Keshav KF, Ingram LO, (1991) Gel electrophoretic analysis of Zymomonas mobilis glycolytic and fermentative enzymes: identification of alcohol dehydrogenase II as a stress protein. J Bacteriol 173: 5975-5982.
    • (1991) J Bacteriol , vol.173 , pp. 5975-5982
    • An, H.1    Scopes, R.K.2    Rodriguez, M.3    Keshav, K.F.4    Ingram, L.O.5
  • 39
    • 33846461303 scopus 로고    scopus 로고
    • Cloning and transcriptional analysis of groES and groEL in ethanol-producing bacterium Zymomonas mobilis TISTR 548
    • Thanonkeo P, Sootsuwan K, Leelavacharamas V, Yamada M, (2007) Cloning and transcriptional analysis of groES and groEL in ethanol-producing bacterium Zymomonas mobilis TISTR 548. Pak J Biol Sci 10: 13-22.
    • (2007) Pak J Biol Sci , vol.10 , pp. 13-22
    • Thanonkeo, P.1    Sootsuwan, K.2    Leelavacharamas, V.3    Yamada, M.4
  • 40
    • 69749109341 scopus 로고    scopus 로고
    • Assessment of sampling strategies for gas chromatography-mass spectrometry (GC-MS) based metabolomics of cyanobacteria
    • Krall L, Huege J, Catchpole G, Steinhauser D, Willmitzer L, (2009) Assessment of sampling strategies for gas chromatography-mass spectrometry (GC-MS) based metabolomics of cyanobacteria. J Chromat B, Analyt Technol Biomed Life Sci 877: 2952-2960.
    • (2009) J Chromat B, Analyt Technol Biomed Life Sci , vol.877 , pp. 2952-2960
    • Krall, L.1    Huege, J.2    Catchpole, G.3    Steinhauser, D.4    Willmitzer, L.5
  • 41
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
    • Yang YH, Dudoit S, Luu P, Lin DM, Peng V, et al. (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 30: e15.
    • (2002) Nucleic Acids Res , vol.30
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5
  • 42
    • 0029748326 scopus 로고    scopus 로고
    • Parallel human genome analysis: microarray-based expression monitoring of 1000 genes
    • Schena M, Shalon D, Heller R, Chai A, Brown PO, et al. (1996) Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Proc Natl Acad Sci USA 93: 10614-10619.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 10614-10619
    • Schena, M.1    Shalon, D.2    Heller, R.3    Chai, A.4    Brown, P.O.5
  • 43
    • 58149193234 scopus 로고    scopus 로고
    • STRING 8-a global view on proteins and their functional interactions in 630 organisms
    • Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, et al. (2009) STRING 8-a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res 37: D412-D416.
    • (2009) Nucleic Acids Res , vol.37
    • Jensen, L.J.1    Kuhn, M.2    Stark, M.3    Chaffron, S.4    Creevey, C.5
  • 44
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn MP, Wolters D, Yates JR, 3rd (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol 19: 242-247.
    • (2001) Nat Biotechnol , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates 3rd, J.R.3
  • 45
    • 18444391517 scopus 로고    scopus 로고
    • Shotgun identification of protein modifications from protein complexes and lens tissue
    • MacCoss MJ, McDonald WH, Saraf A, Sadygov R, Clark JM, et al. (2002) Shotgun identification of protein modifications from protein complexes and lens tissue. Proc Natl Acad Sci USA 99: 7900-7905.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 7900-7905
    • MacCoss, M.J.1    McDonald, W.H.2    Saraf, A.3    Sadygov, R.4    Clark, J.M.5
  • 46
    • 4544280727 scopus 로고    scopus 로고
    • MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications
    • McDonald WH, Tabb DL, Sadygov RG, MacCoss MJ, Venable J, et al. (2004) MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications. Rapid Commun Mass Spectrom 18: 2162-2168.
    • (2004) Rapid Commun Mass Spectrom , vol.18 , pp. 2162-2168
    • McDonald, W.H.1    Tabb, D.L.2    Sadygov, R.G.3    MacCoss, M.J.4    Venable, J.5
  • 47
    • 43849089302 scopus 로고    scopus 로고
    • Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics
    • Pan C, Oda Y, Lankford PK, Zhang B, Samatova NF, et al. (2008) Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics. Mol Cell Proteomics 7: 938-948.
    • (2008) Mol Cell Proteomics , vol.7 , pp. 938-948
    • Pan, C.1    Oda, Y.2    Lankford, P.K.3    Zhang, B.4    Samatova, N.F.5
  • 48
    • 33745238061 scopus 로고    scopus 로고
    • Determination of peptide and protein ion charge states by Fourier transformation of isotope-resolved mass spectra
    • Tabb DL, Shah MB, Strader MB, Connelly HM, Hettich RL, et al. (2006) Determination of peptide and protein ion charge states by Fourier transformation of isotope-resolved mass spectra. J Am Soc Mass Spectrom 17: 903-915.
    • (2006) J Am Soc Mass Spectrom , vol.17 , pp. 903-915
    • Tabb, D.L.1    Shah, M.B.2    Strader, M.B.3    Connelly, H.M.4    Hettich, R.L.5
  • 49
    • 0000857494 scopus 로고
    • An approach to correlate tandem Mass-Spectral data of peptides with amino-acid-sequences in a protein database
    • Eng JK, Mccormack AL, Yates JR, (1994) An approach to correlate tandem Mass-Spectral data of peptides with amino-acid-sequences in a protein database. J Am Soc Mass Spectr 5: 976-989.
    • (1994) J Am Soc Mass Spectr , vol.5 , pp. 976-989
    • Eng, J.K.1    Mccormack, A.L.2    Yates, J.R.3
  • 50
    • 0036393898 scopus 로고    scopus 로고
    • DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics
    • Tabb DL, McDonald WH, Yates JR, 3rd (2002) DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J Proteome Res 1: 21-26.
    • (2002) J Proteome Res , vol.1 , pp. 21-26
    • Tabb, D.L.1    McDonald, W.H.2    Yates 3rd, J.R.3
  • 51
    • 0037277179 scopus 로고    scopus 로고
    • Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome
    • Peng J, Elias JE, Thoreen CC, Licklider LJ, Gygi SP, (2003) Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J Proteome Res 2: 43-50.
    • (2003) J Proteome Res , vol.2 , pp. 43-50
    • Peng, J.1    Elias, J.E.2    Thoreen, C.C.3    Licklider, L.J.4    Gygi, S.P.5
  • 52
    • 33751340274 scopus 로고    scopus 로고
    • Comparison of spectral counting and metabolic stable isotope labeling for use with quantitative microbial proteomics
    • Hendrickson EL, Xia Q, Wang T, Leigh JA, Hackett M, (2006) Comparison of spectral counting and metabolic stable isotope labeling for use with quantitative microbial proteomics. Analyst 131: 1335-1341.
    • (2006) Analyst , vol.131 , pp. 1335-1341
    • Hendrickson, E.L.1    Xia, Q.2    Wang, T.3    Leigh, J.A.4    Hackett, M.5
  • 53
    • 33750987637 scopus 로고    scopus 로고
    • Detecting differential and correlated protein expression in label-free shotgun proteomics
    • Zhang B, VerBerkmoes NC, Langston MA, Uberbacher E, Hettich RL, et al. (2006) Detecting differential and correlated protein expression in label-free shotgun proteomics. J Proteome Res 5: 2909-2918.
    • (2006) J Proteome Res , vol.5 , pp. 2909-2918
    • Zhang, B.1    VerBerkmoes, N.C.2    Langston, M.A.3    Uberbacher, E.4    Hettich, R.L.5
  • 54
    • 77955927885 scopus 로고    scopus 로고
    • Relative, label-free protein quantitation: spectral counting error statistics from nine replicate MudPIT samples
    • Cooper B, Feng J, Garrett WM, (2010) Relative, label-free protein quantitation: spectral counting error statistics from nine replicate MudPIT samples. J Am Soc Mass Spectrom 21: 1534-1546.
    • (2010) J Am Soc Mass Spectrom , vol.21 , pp. 1534-1546
    • Cooper, B.1    Feng, J.2    Garrett, W.M.3
  • 56
    • 33846668510 scopus 로고    scopus 로고
    • Operon prediction using both genome-specific and general genomic information
    • Dam P, Olman V, Harris K, Su Z, Xu Y, (2007) Operon prediction using both genome-specific and general genomic information. Nucleic Acids Res 35: 288-298.
    • (2007) Nucleic Acids Res , vol.35 , pp. 288-298
    • Dam, P.1    Olman, V.2    Harris, K.3    Su, Z.4    Xu, Y.5
  • 58
    • 69849086336 scopus 로고    scopus 로고
    • QUBIC: a qualitative biclustering algorithm for analyses of gene expression data
    • Li G, Ma Q, Tang H, Paterson AH, Xu Y, (2009) QUBIC: a qualitative biclustering algorithm for analyses of gene expression data. Nucleic Acids Res 37: e101.
    • (2009) Nucleic Acids Res , vol.37
    • Li, G.1    Ma, Q.2    Tang, H.3    Paterson, A.H.4    Xu, Y.5
  • 59
    • 34447281116 scopus 로고    scopus 로고
    • Identification of target genes conferring ethanol stress tolerance to Saccharomyces cerevisiae based on DNA microarray data analysis
    • Hirasawa T, Yoshikawa K, Nakakura Y, Nagahisa K, Furusawa C, et al. (2007) Identification of target genes conferring ethanol stress tolerance to Saccharomyces cerevisiae based on DNA microarray data analysis. J Biotechnol 131: 34-44.
    • (2007) J Biotechnol , vol.131 , pp. 34-44
    • Hirasawa, T.1    Yoshikawa, K.2    Nakakura, Y.3    Nagahisa, K.4    Furusawa, C.5
  • 60
    • 0033956060 scopus 로고    scopus 로고
    • The COG database: a tool for genome-scale analysis of protein functions and evolution
    • Tatusov RL, Galperin MY, Natale DA, Koonin EV, (2000) The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res 28: 33-36.
    • (2000) Nucleic Acids Res , vol.28 , pp. 33-36
    • Tatusov, R.L.1    Galperin, M.Y.2    Natale, D.A.3    Koonin, E.V.4
  • 61
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • Liu H, Sadygov RG, Yates JR, 3rd (2004) A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal Chem 76: 4193-4201.
    • (2004) Anal Chem , vol.76 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates 3rd, J.R.3
  • 63
    • 34247581681 scopus 로고    scopus 로고
    • Diversity in isoprene unit biosynthesis: The methylerythritol phosphate pathway in bacteria and plastids
    • Rohmer M, (2007) Diversity in isoprene unit biosynthesis: The methylerythritol phosphate pathway in bacteria and plastids. Pure Appl Chem 79: 739-751.
    • (2007) Pure Appl Chem , vol.79 , pp. 739-751
    • Rohmer, M.1
  • 64
    • 0032943554 scopus 로고    scopus 로고
    • Hopanoid biosynthesis and function in bacteria
    • Kannenberg EL, Poralla K, (1999) Hopanoid biosynthesis and function in bacteria. Naturwissenschaften 86: 168-176.
    • (1999) Naturwissenschaften , vol.86 , pp. 168-176
    • Kannenberg, E.L.1    Poralla, K.2
  • 65
    • 84867729815 scopus 로고    scopus 로고
    • Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress
    • Yang S, Giannone RJ, Dice L, Yang ZK, Engle NL, et al. (2012) Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress. BMC Genomics 13: 336.
    • (2012) BMC Genomics , vol.13 , pp. 336
    • Yang, S.1    Giannone, R.J.2    Dice, L.3    Yang, Z.K.4    Engle, N.L.5
  • 66
    • 85008530456 scopus 로고
    • Cloning and characterization of a pair of genes that stimulate the production and secretion of Zymomonas mobilis extracellular levansucrase and invertase
    • Kondo Y, Toyoda A, Fukushi H, Yanase H, Tonomura K, et al. (1994) Cloning and characterization of a pair of genes that stimulate the production and secretion of Zymomonas mobilis extracellular levansucrase and invertase. Bioscience Biotechnology and Biochemistry 58: 526-530.
    • (1994) Bioscience Biotechnology and Biochemistry , vol.58 , pp. 526-530
    • Kondo, Y.1    Toyoda, A.2    Fukushi, H.3    Yanase, H.4    Tonomura, K.5
  • 67
    • 0027210479 scopus 로고
    • Fermentation characteristics of levansucrase mutants of Zymomonas mobilis
    • Kannan TR, Mukundan AG, Gunasekaran P, (1993) Fermentation characteristics of levansucrase mutants of Zymomonas mobilis. J Ferment Bioeng 75: 265-270.
    • (1993) J Ferment Bioeng , vol.75 , pp. 265-270
    • Kannan, T.R.1    Mukundan, A.G.2    Gunasekaran, P.3
  • 68
    • 34249936957 scopus 로고    scopus 로고
    • Anaerobic fermentation of glycerol: a path to economic viability for the biofuels industry
    • Yazdani SS, Gonzalez R, (2007) Anaerobic fermentation of glycerol: a path to economic viability for the biofuels industry. Curr Opin Biotechnol 18: 213-219.
    • (2007) Curr Opin Biotechnol , vol.18 , pp. 213-219
    • Yazdani, S.S.1    Gonzalez, R.2
  • 70
    • 80051980539 scopus 로고    scopus 로고
    • Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum
    • Brown SD, Guss AM, Karpinets TV, Parks JM, Smolin N, et al. (2011) Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum. Proc Natl Acad Sci USA 108: 13752-13757.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 13752-13757
    • Brown, S.D.1    Guss, A.M.2    Karpinets, T.V.3    Parks, J.M.4    Smolin, N.5
  • 72
    • 71149108056 scopus 로고    scopus 로고
    • Correlation of mRNA and protein in complex biological samples
    • Maier T, Guell M, Serrano L, (2009) Correlation of mRNA and protein in complex biological samples. FEBS Lett 583: 3966-3973.
    • (2009) FEBS Lett , vol.583 , pp. 3966-3973
    • Maier, T.1    Guell, M.2    Serrano, L.3
  • 73
    • 33845790070 scopus 로고    scopus 로고
    • Correlation of mRNA expression and protein abundance affected by multiple sequence features related to translational efficiency in Desulfovibrio vulgaris: a quantitative analysis
    • Nie L, Wu G, Zhang W, (2006) Correlation of mRNA expression and protein abundance affected by multiple sequence features related to translational efficiency in Desulfovibrio vulgaris: a quantitative analysis. Genetics 174: 2229-2243.
    • (2006) Genetics , vol.174 , pp. 2229-2243
    • Nie, L.1    Wu, G.2    Zhang, W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.