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Volumn 23, Issue 2, 2013, Pages

Identifiability and inference of pathway motifs by epistasis analysis

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MODEL; COMPUTER SIMULATION; EPISTASIS; FEEDBACK SYSTEM; GENE REGULATORY NETWORK; QUANTITATIVE TRAIT; ARTICLE;

EID: 84880358132     PISSN: 10541500     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.4807483     Document Type: Article
Times cited : (7)

References (21)
  • 1
    • 34249041230 scopus 로고    scopus 로고
    • Exploring genetic interactions and networks with yeast
    • 10.1038/nrg2085
    • Boone C. Bussey H. Andrews B.J. Exploring genetic interactions and networks with yeast. Nature Rev. Gen. 2007, 8:437-449. 10.1038/nrg2085, and ,.
    • (2007) Nature Rev. Gen. , vol.8 , pp. 437-449
    • Boone, C.1    Bussey, H.2    Andrews, B.J.3
  • 4
    • 33846604202 scopus 로고    scopus 로고
    • Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions
    • 10.1038/ng1948
    • Onge R.P. S. Mani R. Oh J. Proctor M. Fung E. Davis R.W. Nislow C. Roth F.P. Giaever G. Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions. Nat. Genet. 2007, 39:199-206. 10.1038/ng1948, , , , and ,.
    • (2007) Nat. Genet. , vol.39 , pp. 199-206
    • Onge, R.P.S.1    Mani, R.2    Oh, J.3    Proctor, M.4    Fung, E.5    Davis, R.W.6    Nislow, C.7    Roth, F.P.8    Giaever, G.9
  • 5
    • 77956491289 scopus 로고    scopus 로고
    • Identification of response-modulated genetic interactions by sensitivity-based epistatic analysis
    • 10.1186/1471-2164-11-493
    • Batenchuk C. Tepliakova L. Kaern M. Identification of response-modulated genetic interactions by sensitivity-based epistatic analysis. BMC Genomics 2010, 11:493. 10.1186/1471-2164-11-493, and ,.
    • (2010) BMC Genomics , vol.11 , pp. 493
    • Batenchuk, C.1    Tepliakova, L.2    Kaern, M.3
  • 8
    • 84856094560 scopus 로고    scopus 로고
    • Differential network biology
    • 10.1038/msb.2011.99
    • Ideker T. Krogan N.J. Differential network biology. Mol. Syst. Biol. 2012, 8:565. 10.1038/msb.2011.99, and ,.
    • (2012) Mol. Syst. Biol. , vol.8 , pp. 565
    • Ideker, T.1    Krogan, N.J.2
  • 9
    • 84879796432 scopus 로고    scopus 로고
    • Epigenetic epistatic interactions constrain the evolution of gene expression
    • 10.1038/msb.2013.2
    • Park S. Lehner B. Epigenetic epistatic interactions constrain the evolution of gene expression. Mol. Syst. Biol. 2013, 9:1-7. 10.1038/msb.2013.2, and ,.
    • (2013) Mol. Syst. Biol. , vol.9 , pp. 1-7
    • Park, S.1    Lehner, B.2
  • 10
    • 84866931077 scopus 로고    scopus 로고
    • Criticality is an emergent property of genetic networks that exhibit evolvability
    • 10.1371/journal.pcbi.1002669
    • Torres-Sosa C. Huang S. Aldana M. Criticality is an emergent property of genetic networks that exhibit evolvability. PLoS Comput. Biol. 2012, 8:e1002669. 10.1371/journal.pcbi.1002669, and ,.
    • (2012) PLoS Comput. Biol. , vol.8
    • Torres-Sosa, C.1    Huang, S.2    Aldana, M.3
  • 11
    • 0026666791 scopus 로고
    • Ordering gene function: The interpretation of epistasis in regulatory hierarchies
    • 10.1016/0168-9525(92)90263-4
    • Avery L. Wasserman S. Ordering gene function: The interpretation of epistasis in regulatory hierarchies. Trends Genet. 1992, 8:312-316. 10.1016/0168-9525(92)90263-4, and ,.
    • (1992) Trends Genet. , vol.8 , pp. 312-316
    • Avery, L.1    Wasserman, S.2
  • 12
    • 54149088214 scopus 로고    scopus 로고
    • Epistasis-the essential role of gene interactions in the structure and evolution of genetic systems
    • 10.1038/nrg2452
    • Phillips P.C. Epistasis-the essential role of gene interactions in the structure and evolution of genetic systems. Nat. Rev. Genet. 2008, 9:855-867. 10.1038/nrg2452, ,.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 855-867
    • Phillips, P.C.1
  • 13
    • 77953245945 scopus 로고    scopus 로고
    • Automated identification of pathways from quantitative genetic interaction data
    • 10.1038/msb.2010.27
    • Battle A. Jonikas M.C. Walter P. Weissman J.S. Koller D. Automated identification of pathways from quantitative genetic interaction data. Mol. Syst. Biol. 2010, 6:1-13. 10.1038/msb.2010.27, , and ,.
    • (2010) Mol. Syst. Biol. , vol.6 , pp. 1-13
    • Battle, A.1    Jonikas, M.C.2    Walter, P.3    Weissman, J.S.4    Koller, D.5
  • 14
    • 79961200389 scopus 로고    scopus 로고
    • GeneNetWeaver: In silico benchmark generation and performance profiling of network inference methods
    • 10.1093/bioinformatics/btr373
    • Schaffter T. Marbach D. Floreano D. GeneNetWeaver: In silico benchmark generation and performance profiling of network inference methods. Bioinformatics 2011, 27:2263-2270. 10.1093/bioinformatics/btr373, and ,.
    • (2011) Bioinformatics , vol.27 , pp. 2263-2270
    • Schaffter, T.1    Marbach, D.2    Floreano, D.3
  • 15
    • 59649110273 scopus 로고    scopus 로고
    • Generating realistic in silico gene networks for performance assessment of reverse engineering methods
    • 10.1089/cmb.2008.09TT
    • Marbach D. Schaffter T. Mattiussi C. Floreano D. Generating realistic in silico gene networks for performance assessment of reverse engineering methods. J. Comput. Biol. 2009, 16:229-239. 10.1089/cmb.2008.09TT, , and ,.
    • (2009) J. Comput. Biol. , vol.16 , pp. 229-239
    • Marbach, D.1    Schaffter, T.2    Mattiussi, C.3    Floreano, D.4
  • 17
    • 0034688174 scopus 로고    scopus 로고
    • Construction of a genetic toggle switch in Escherichia coli
    • 10.1038/35002131
    • Gardner T.S. Cantor C.R. Collins J.J. Construction of a genetic toggle switch in Escherichia coli. Nature 2000, 403:339-342. 10.1038/35002131, and ,.
    • (2000) Nature , vol.403 , pp. 339-342
    • Gardner, T.S.1    Cantor, C.R.2    Collins, J.J.3
  • 18
    • 58249117722 scopus 로고    scopus 로고
    • A tunable synthetic mammalian oscillator
    • 10.1038/nature07616
    • Tigges M. Marquez-Lago T.T. Stelling J. Fussenegger M. A tunable synthetic mammalian oscillator. Nature 2008, 457:309-312. 10.1038/nature07616, , and ,.
    • (2008) Nature , vol.457 , pp. 309-312
    • Tigges, M.1    Marquez-Lago, T.T.2    Stelling, J.3    Fussenegger, M.4
  • 19
    • 43149108161 scopus 로고    scopus 로고
    • A bistable Rb-E2F switch underlies the restriction point
    • 10.1038/ncb1711
    • Yao G. Lee T.J. Mori S. Nevins J.R. You L. A bistable Rb-E2F switch underlies the restriction point. Nature Cell Biology 2008, 10:476-482. 10.1038/ncb1711, , and ,.
    • (2008) Nature Cell Biology , vol.10 , pp. 476-482
    • Yao, G.1    Lee, T.J.2    Mori, S.3    Nevins, J.R.4    You, L.5
  • 20
    • 79952637804 scopus 로고    scopus 로고
    • Modeling the cell cycle: Why do certain circuits oscillate?
    • 10.1016/j.cell.2011.03.006
    • Ferrell J.E. Tsai T.Y.-.C. Yang Q. Modeling the cell cycle: Why do certain circuits oscillate?. Cell 2011, 144:874-885. 10.1016/j.cell.2011.03.006, and ,.
    • (2011) Cell , vol.144 , pp. 874-885
    • Ferrell, J.E.1    Tsai, T.Y.-C.2    Yang, Q.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.