-
1
-
-
34249041230
-
Exploring genetic interactions and networks with yeast
-
10.1038/nrg2085
-
Boone C. Bussey H. Andrews B.J. Exploring genetic interactions and networks with yeast. Nature Rev. Gen. 2007, 8:437-449. 10.1038/nrg2085, and ,.
-
(2007)
Nature Rev. Gen.
, vol.8
, pp. 437-449
-
-
Boone, C.1
Bussey, H.2
Andrews, B.J.3
-
2
-
-
78649705725
-
Quantitative analysis of fitness and genetic interactions in yeast on a genome scale
-
10.1038/nmeth.1534
-
Baryshnikova A. Costanzo M. Kim Y. Ding H. Koh J. Toufighi K. Youn J.-.Y. Ou J. San Luis B.-.J. Bandyopadhyay S. Hibbs M. Hess D. Gingras A.-.C. Bader G.D. Troyanskaya O.G. Brown G.W. Andrews B. Boone C. Myers C.L. Quantitative analysis of fitness and genetic interactions in yeast on a genome scale. Nat. Methods 2010, 7:1017-1024. 10.1038/nmeth.1534, , , , , , , , , and ,.
-
(2010)
Nat. Methods
, vol.7
, pp. 1017-1024
-
-
Baryshnikova, A.1
Costanzo, M.2
Kim, Y.3
Ding, H.4
Koh, J.5
Toufighi, K.6
Youn, J.-Y.7
Ou, J.8
San Luis, B.-J.9
Bandyopadhyay, S.10
Hibbs, M.11
Hess, D.12
Gingras, A.-C.13
Bader, G.D.14
Troyanskaya, O.G.15
Brown, G.W.16
Andrews, B.17
Boone, C.18
Myers, C.L.19
-
3
-
-
75649111192
-
The genetic landscape of a cell
-
10.1126/science.1180823
-
Costanzo M. Baryshnikova A. Bellay J. Kim Y. Spear E.D. Sevier C.S. Ding H. Koh J.L. Y. Toufighi K. Mostafavi S. Prinz J. St Onge R.P. Vandersluis B. Makhnevych T. Vizeacoumar F.J. Alizadeh S. Bahr S. Brost R.L. Chen Y. Cokol M. Deshpande R. Li Z. Lin Z.-.Y. Liang W. Marback M. Paw J. San Luis B.-.J. Shuteriqi E. Tong A.H. Y. van Dyk N. Wallace I.M. Whitney J.A. Weirauch M.T. Zhong G. Zhu H. Houry W.A. Brudno M. Ragibizadeh S. Papp B. Pál C. Roth F.P. Giaever G. Nislow C. Troyanskaya O.G. Bussey H. Bader G.D. Gingras A.-.C. Morris Q.D. Kim P.M. Kaiser C.A. Myers C.L. Andrews B.J. Boone C. The genetic landscape of a cell. Science 2010, 327:425-431. 10.1126/science.1180823, , , , , , , , , , , , , , , , , , , , , , , , , , and ,.
-
(2010)
Science
, vol.327
, pp. 425-431
-
-
Costanzo, M.1
Baryshnikova, A.2
Bellay, J.3
Kim, Y.4
Spear, E.D.5
Sevier, C.S.6
Ding, H.7
Koh, J.L.Y.8
Toufighi, K.9
Mostafavi, S.10
Prinz, J.11
St Onge, R.P.12
Vandersluis, B.13
Makhnevych, T.14
Vizeacoumar, F.J.15
Alizadeh, S.16
Bahr, S.17
Brost, R.L.18
Chen, Y.19
Cokol, M.20
Deshpande, R.21
Li, Z.22
Lin, Z.-Y.23
Liang, W.24
Marback, M.25
Paw, J.26
San Luis, B.-J.27
Shuteriqi, E.28
Tong, A.H.Y.29
van Dyk, N.30
Wallace, I.M.31
Whitney, J.A.32
Weirauch, M.T.33
Zhong, G.34
Zhu, H.35
Houry, W.A.36
Brudno, M.37
Ragibizadeh, S.38
Papp, B.39
Pál, C.40
Roth, F.P.41
Giaever, G.42
Nislow, C.43
Troyanskaya, O.G.44
Bussey, H.45
Bader, G.D.46
Gingras, A.-C.47
Morris, Q.D.48
Kim, P.M.49
Kaiser, C.A.50
Myers, C.L.51
Andrews, B.J.52
Boone, C.53
more..
-
4
-
-
33846604202
-
Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions
-
10.1038/ng1948
-
Onge R.P. S. Mani R. Oh J. Proctor M. Fung E. Davis R.W. Nislow C. Roth F.P. Giaever G. Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions. Nat. Genet. 2007, 39:199-206. 10.1038/ng1948, , , , and ,.
-
(2007)
Nat. Genet.
, vol.39
, pp. 199-206
-
-
Onge, R.P.S.1
Mani, R.2
Oh, J.3
Proctor, M.4
Fung, E.5
Davis, R.W.6
Nislow, C.7
Roth, F.P.8
Giaever, G.9
-
5
-
-
77956491289
-
Identification of response-modulated genetic interactions by sensitivity-based epistatic analysis
-
10.1186/1471-2164-11-493
-
Batenchuk C. Tepliakova L. Kaern M. Identification of response-modulated genetic interactions by sensitivity-based epistatic analysis. BMC Genomics 2010, 11:493. 10.1186/1471-2164-11-493, and ,.
-
(2010)
BMC Genomics
, vol.11
, pp. 493
-
-
Batenchuk, C.1
Tepliakova, L.2
Kaern, M.3
-
6
-
-
79958122719
-
Quantitative epistasis analysis and pathway inference from genetic interaction data
-
10.1371/journal.pcbi.1002048
-
Phenix H. Morin K. Batenchuk C. Parker J. Abedi V. Yang L. Tepliakova L. Perkins T.J. Kaern M. Quantitative epistasis analysis and pathway inference from genetic interaction data. PLoS Comput. Biol. 2011, 7:e1002048. 10.1371/journal.pcbi.1002048, , , , and ,.
-
(2011)
PLoS Comput. Biol.
, vol.7
-
-
Phenix, H.1
Morin, K.2
Batenchuk, C.3
Parker, J.4
Abedi, V.5
Yang, L.6
Tepliakova, L.7
Perkins, T.J.8
Kaern, M.9
-
7
-
-
78649703966
-
Rewiring of genetic networks in response to DNA damage
-
10.1126/science.1195618
-
Bandyopadhyay S. Mehta M. Kuo D. Sung M.-.K. Chuang R. Jaehnig E.J. Bodenmiller B. Licon K. Copeland W. Shales M. Fiedler D. Dutkowski J. Guénolé A. van Attikum H. Shokat K.M. Kolodner R.D. Huh W.-.K. Aebersold R. Keogh M.-.C. Krogan N.J. Ideker T. Rewiring of genetic networks in response to DNA damage. Science 2010, 330:1385-1389. 10.1126/science.1195618, , , , , , , , , , and ,.
-
(2010)
Science
, vol.330
, pp. 1385-1389
-
-
Bandyopadhyay, S.1
Mehta, M.2
Kuo, D.3
Sung, M.-K.4
Chuang, R.5
Jaehnig, E.J.6
Bodenmiller, B.7
Licon, K.8
Copeland, W.9
Shales, M.10
Fiedler, D.11
Dutkowski, J.12
Guénolé, A.13
van Attikum, H.14
Shokat, K.M.15
Kolodner, R.D.16
Huh, W.-K.17
Aebersold, R.18
Keogh, M.-C.19
Krogan, N.J.20
Ideker, T.21
more..
-
8
-
-
84856094560
-
Differential network biology
-
10.1038/msb.2011.99
-
Ideker T. Krogan N.J. Differential network biology. Mol. Syst. Biol. 2012, 8:565. 10.1038/msb.2011.99, and ,.
-
(2012)
Mol. Syst. Biol.
, vol.8
, pp. 565
-
-
Ideker, T.1
Krogan, N.J.2
-
9
-
-
84879796432
-
Epigenetic epistatic interactions constrain the evolution of gene expression
-
10.1038/msb.2013.2
-
Park S. Lehner B. Epigenetic epistatic interactions constrain the evolution of gene expression. Mol. Syst. Biol. 2013, 9:1-7. 10.1038/msb.2013.2, and ,.
-
(2013)
Mol. Syst. Biol.
, vol.9
, pp. 1-7
-
-
Park, S.1
Lehner, B.2
-
10
-
-
84866931077
-
Criticality is an emergent property of genetic networks that exhibit evolvability
-
10.1371/journal.pcbi.1002669
-
Torres-Sosa C. Huang S. Aldana M. Criticality is an emergent property of genetic networks that exhibit evolvability. PLoS Comput. Biol. 2012, 8:e1002669. 10.1371/journal.pcbi.1002669, and ,.
-
(2012)
PLoS Comput. Biol.
, vol.8
-
-
Torres-Sosa, C.1
Huang, S.2
Aldana, M.3
-
11
-
-
0026666791
-
Ordering gene function: The interpretation of epistasis in regulatory hierarchies
-
10.1016/0168-9525(92)90263-4
-
Avery L. Wasserman S. Ordering gene function: The interpretation of epistasis in regulatory hierarchies. Trends Genet. 1992, 8:312-316. 10.1016/0168-9525(92)90263-4, and ,.
-
(1992)
Trends Genet.
, vol.8
, pp. 312-316
-
-
Avery, L.1
Wasserman, S.2
-
12
-
-
54149088214
-
Epistasis-the essential role of gene interactions in the structure and evolution of genetic systems
-
10.1038/nrg2452
-
Phillips P.C. Epistasis-the essential role of gene interactions in the structure and evolution of genetic systems. Nat. Rev. Genet. 2008, 9:855-867. 10.1038/nrg2452, ,.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 855-867
-
-
Phillips, P.C.1
-
13
-
-
77953245945
-
Automated identification of pathways from quantitative genetic interaction data
-
10.1038/msb.2010.27
-
Battle A. Jonikas M.C. Walter P. Weissman J.S. Koller D. Automated identification of pathways from quantitative genetic interaction data. Mol. Syst. Biol. 2010, 6:1-13. 10.1038/msb.2010.27, , and ,.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 1-13
-
-
Battle, A.1
Jonikas, M.C.2
Walter, P.3
Weissman, J.S.4
Koller, D.5
-
14
-
-
79961200389
-
GeneNetWeaver: In silico benchmark generation and performance profiling of network inference methods
-
10.1093/bioinformatics/btr373
-
Schaffter T. Marbach D. Floreano D. GeneNetWeaver: In silico benchmark generation and performance profiling of network inference methods. Bioinformatics 2011, 27:2263-2270. 10.1093/bioinformatics/btr373, and ,.
-
(2011)
Bioinformatics
, vol.27
, pp. 2263-2270
-
-
Schaffter, T.1
Marbach, D.2
Floreano, D.3
-
15
-
-
59649110273
-
Generating realistic in silico gene networks for performance assessment of reverse engineering methods
-
10.1089/cmb.2008.09TT
-
Marbach D. Schaffter T. Mattiussi C. Floreano D. Generating realistic in silico gene networks for performance assessment of reverse engineering methods. J. Comput. Biol. 2009, 16:229-239. 10.1089/cmb.2008.09TT, , and ,.
-
(2009)
J. Comput. Biol.
, vol.16
, pp. 229-239
-
-
Marbach, D.1
Schaffter, T.2
Mattiussi, C.3
Floreano, D.4
-
16
-
-
42149137884
-
Defining genetic interaction
-
10.1073/pnas.0712255105
-
Mani R. St Onge R.P. Hartman J.L. Giaever G. Roth F.P. Defining genetic interaction. Proc. Natl. Acad. Sci. U.S.A. 2008, 105:3461-3466. 10.1073/pnas.0712255105, , and ,.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 3461-3466
-
-
Mani, R.1
St Onge, R.P.2
Hartman, J.L.3
Giaever, G.4
Roth, F.P.5
-
17
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
10.1038/35002131
-
Gardner T.S. Cantor C.R. Collins J.J. Construction of a genetic toggle switch in Escherichia coli. Nature 2000, 403:339-342. 10.1038/35002131, and ,.
-
(2000)
Nature
, vol.403
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
18
-
-
58249117722
-
A tunable synthetic mammalian oscillator
-
10.1038/nature07616
-
Tigges M. Marquez-Lago T.T. Stelling J. Fussenegger M. A tunable synthetic mammalian oscillator. Nature 2008, 457:309-312. 10.1038/nature07616, , and ,.
-
(2008)
Nature
, vol.457
, pp. 309-312
-
-
Tigges, M.1
Marquez-Lago, T.T.2
Stelling, J.3
Fussenegger, M.4
-
19
-
-
43149108161
-
A bistable Rb-E2F switch underlies the restriction point
-
10.1038/ncb1711
-
Yao G. Lee T.J. Mori S. Nevins J.R. You L. A bistable Rb-E2F switch underlies the restriction point. Nature Cell Biology 2008, 10:476-482. 10.1038/ncb1711, , and ,.
-
(2008)
Nature Cell Biology
, vol.10
, pp. 476-482
-
-
Yao, G.1
Lee, T.J.2
Mori, S.3
Nevins, J.R.4
You, L.5
-
20
-
-
79952637804
-
Modeling the cell cycle: Why do certain circuits oscillate?
-
10.1016/j.cell.2011.03.006
-
Ferrell J.E. Tsai T.Y.-.C. Yang Q. Modeling the cell cycle: Why do certain circuits oscillate?. Cell 2011, 144:874-885. 10.1016/j.cell.2011.03.006, and ,.
-
(2011)
Cell
, vol.144
, pp. 874-885
-
-
Ferrell, J.E.1
Tsai, T.Y.-C.2
Yang, Q.3
|