-
1
-
-
69249209608
-
RecQ helicases: Multifunctional genome caretakers
-
Chu, W.K. & Hickson, I.D. RecQ helicases: multifunctional genome caretakers. Nat. Rev. Cancer 9, 644-654 (2009).
-
(2009)
Nat. Rev. Cancer
, vol.9
, pp. 644-654
-
-
Chu, W.K.1
Hickson, I.D.2
-
2
-
-
67349230444
-
Roles of RECQ helicases in recombination based DNA repair, genomic stability and aging
-
Singh, D.K., Ahn, B. & Bohr, V.A. Roles of RECQ helicases in recombination based DNA repair, genomic stability and aging. Biogerontology 10, 235-252 (2009).
-
(2009)
Biogerontology
, vol.10
, pp. 235-252
-
-
Singh, D.K.1
Ahn, B.2
Bohr, V.A.3
-
3
-
-
0028785586
-
The Bloom's syndrome gene product is homologous to RecQ helicases
-
Ellis, N.A. et al. The Bloom's syndrome gene product is homologous to RecQ helicases. Cell 83, 655-666 (1995).
-
(1995)
Cell
, vol.83
, pp. 655-666
-
-
Ellis, N.A.1
-
4
-
-
15844409553
-
Positional cloning of the Werner's syndrome gene
-
Yu, C.E. et al. Positional cloning of the Werner's syndrome gene. Science 272, 258-262 (1996).
-
(1996)
Science
, vol.272
, pp. 258-262
-
-
Yu, C.E.1
-
5
-
-
0032736140
-
Rothmund-Thomson syndrome responsible gene, RECQL4: Genomic structure and products
-
Kitao, S., Lindor, N.M., Shiratori, M., Furuichi, Y. & Shimamoto, A. Rothmund-Thomson syndrome responsible gene, RECQL4: genomic structure and products. Genomics 61, 268-276 (1999).
-
(1999)
Genomics
, vol.61
, pp. 268-276
-
-
Kitao, S.1
Lindor, N.M.2
Shiratori, M.3
Furuichi, Y.4
Shimamoto, A.5
-
6
-
-
78149434190
-
The RecQ DNA helicases in DNA repair
-
Bernstein, K.A., Gangloff, S. & Rothstein, R. The RecQ DNA helicases in DNA repair. Annu. Rev. Genet. 44, 393-417 (2010).
-
(2010)
Annu. Rev. Genet
, vol.44
, pp. 393-417
-
-
Bernstein, K.A.1
Gangloff, S.2
Rothstein, R.3
-
7
-
-
17644410077
-
Recql5 and Blm RecQ DNA helicases have nonredundant roles in suppressing crossovers
-
Hu, Y. et al. Recql5 and Blm RecQ DNA helicases have nonredundant roles in suppressing crossovers. Mol. Cell Biol. 25, 3431-3442 (2005).
-
(2005)
Mol. Cell Biol
, vol.25
, pp. 3431-3442
-
-
Hu, Y.1
-
8
-
-
36849013079
-
RECQL5/Recql5 helicase regulates homologous recombination and suppresses tumor formation via disruption of Rad51 presynaptic filaments
-
Hu, Y. et al. RECQL5/Recql5 helicase regulates homologous recombination and suppresses tumor formation via disruption of Rad51 presynaptic filaments. Genes Dev. 21, 3073-3084 (2007).
-
(2007)
Genes Dev
, vol.21
, pp. 3073-3084
-
-
Hu, Y.1
-
9
-
-
33750980979
-
Human RECQ5 helicase promotes strand exchange on synthetic DNA structures resembling a stalled replication fork
-
Kanagaraj, R., Saydam, N., Garcia, P.L., Zheng, L. & Janscak, P. Human RECQ5 helicase promotes strand exchange on synthetic DNA structures resembling a stalled replication fork. Nucleic Acids Res. 34, 5217-5231 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5217-5231
-
-
Kanagaraj, R.1
Saydam, N.2
Garcia, P.L.3
Zheng, L.4
Janscak, P.5
-
10
-
-
65849390687
-
MRE11 complex links RECQ5 helicase to sites of DNA damage
-
Zheng, L. et al. MRE11 complex links RECQ5 helicase to sites of DNA damage. Nucleic Acids Res. 37, 2645-2657 (2009).
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 2645-2657
-
-
Zheng, L.1
-
11
-
-
77952372219
-
Physical interaction of RECQ5 helicase with RAD51 facilitates its anti-recombinase activity
-
Schwendener, S. et al. Physical interaction of RECQ5 helicase with RAD51 facilitates its anti-recombinase activity. J. Biol. Chem. 285, 15739-15745 (2010).
-
(2010)
J. Biol. Chem
, vol.285
, pp. 15739-15745
-
-
Schwendener, S.1
-
12
-
-
47249100637
-
RECQ5-RNA polymerase II association identified by targeted proteomic analysis of human chromatin
-
Aygn, O., Svejstrup, J. & Liu, Y.A. RECQ5-RNA polymerase II association identified by targeted proteomic analysis of human chromatin. Proc. Natl. Acad. Sci. USA 105, 8580-8584 (2008).
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 8580-8584
-
-
Aygn, O.1
Svejstrup, J.2
Liu, Y.A.3
-
13
-
-
48249140331
-
Association of human DNA helicase RecQ5 with RNA polymerase II and its possible role in transcription
-
Izumikawa, K. et al. Association of human DNA helicase RecQ5 with RNA polymerase II and its possible role in transcription. Biochem. J. 413, 505-516 (2008).
-
(2008)
Biochem. J
, vol.413
, pp. 505-516
-
-
Izumikawa, K.1
-
14
-
-
69949145039
-
Direct inhibition of RNA polymerase II transcription by RECQL5
-
Aygn, O. et al. Direct inhibition of RNA polymerase II transcription by RECQL5. J. Biol. Chem. 284, 23197-23203 (2009).
-
(2009)
J. Biol. Chem
, vol.284
, pp. 23197-23203
-
-
Aygn, O.1
-
15
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
Holm, L. & Rosenstrom, P. Dali server: conservation mapping in 3D. Nucleic Acids Res. 38, W545-W549 (2010).
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Holm, L.1
Rosenstrom, P.2
-
16
-
-
0030249832
-
The RNA polymerase II general elongation factors
-
Reines, D., Conaway, J.W. & Conaway, R.C. The RNA polymerase II general elongation factors. Trends Biochem. Sci. 21, 351-355 (1996).
-
(1996)
Trends Biochem. Sci
, vol.21
, pp. 351-355
-
-
Reines, D.1
Conaway, J.W.2
Conaway, R.C.3
-
17
-
-
0034006399
-
Transcription elongation factor SII
-
Wind, M. & Reines, D. Transcription elongation factor SII. Bioessays 22, 327-336 (2000).
-
(2000)
Bioessays
, vol.22
, pp. 327-336
-
-
Wind, M.1
Reines, D.2
-
18
-
-
0030475226
-
Fidelity of RNA polymerase II transcription controlled by elongation factor TFIIS
-
Jeon, C. & Agarwal, K. Fidelity of RNA polymerase II transcription controlled by elongation factor TFIIS. Proc. Natl. Acad. Sci. USA 93, 13677-13682 (1996).
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 13677-13682
-
-
Jeon, C.1
Agarwal, K.2
-
19
-
-
0032524661
-
Transcriptional fidelity and proofreading by RNA polymerase II
-
Thomas, M.J., Platas, A.A. & Hawley, D.K. Transcriptional fidelity and proofreading by RNA polymerase II. Cell 93, 627-637 (1998).
-
(1998)
Cell
, vol.93
, pp. 627-637
-
-
Thomas, M.J.1
Platas, A.A.2
Hawley, D.K.3
-
20
-
-
0028047336
-
Purified yeast RNA polymerase II reads through intrinsic blocks to elongation in response to the yeast TFIIS analogue, P37
-
Christie, K.R., Awrey, D.E., Edwards, A.M. & Kane, C.M. Purified yeast RNA polymerase II reads through intrinsic blocks to elongation in response to the yeast TFIIS analogue, P37. J. Biol. Chem. 269, 936-943 (1994).
-
(1994)
J. Biol. Chem
, vol.269
, pp. 936-943
-
-
Christie, K.R.1
Awrey, D.E.2
Edwards, A.M.3
Kane, C.M.4
-
21
-
-
36049014424
-
TFIIS elongation factor and Mediator act in conjunction during transcription initiation in vivo
-
Guglielmi, B., Soutourina, J., Esnault, C. & Werner, M. TFIIS elongation factor and Mediator act in conjunction during transcription initiation in vivo. Proc. Natl. Acad. Sci. USA 104, 16062-16067 (2007).
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 16062-16067
-
-
Guglielmi, B.1
Soutourina, J.2
Esnault, C.3
Werner, M.4
-
22
-
-
36049035016
-
The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes
-
Kim, B. et al. The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes. Proc. Natl. Acad. Sci. USA 104, 16068-16073 (2007).
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 16068-16073
-
-
Kim, B.1
-
23
-
-
79952440464
-
Structural basis of RNA polymerase II backtracking, arrest and reactivation
-
Cheung, A.C. & Cramer, P. Structural basis of RNA polymerase II backtracking, arrest and reactivation. Nature 471, 249-253 (2011).
-
(2011)
Nature
, vol.471
, pp. 249-253
-
-
Cheung, A.C.1
Cramer, P.2
-
24
-
-
15644377282
-
Yeast transcript elongation factor (TFIIS), structure and function. II: RNA polymerase binding, transcript cleavage, and read-through
-
Awrey, D.E. et al. Yeast transcript elongation factor (TFIIS), structure and function. II: RNA polymerase binding, transcript cleavage, and read-through. J. Biol. Chem. 273, 22595-22605 (1998).
-
(1998)
J. Biol. Chem
, vol.273
, pp. 22595-22605
-
-
Awrey, D.E.1
-
25
-
-
10944232674
-
Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS
-
Kettenberger, H., Armache, K.J. & Cramer, P. Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS. Mol. Cell 16, 955-965 (2004).
-
(2004)
Mol. Cell
, vol.16
, pp. 955-965
-
-
Kettenberger, H.1
Armache, K.J.2
Cramer, P.3
-
26
-
-
66349138227
-
Structural basis of transcription: Backtracked RNA polymerase II at 3.4 angstrom resolution
-
Wang, D. et al. Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution. Science 324, 1203-1206 (2009).
-
(2009)
Science
, vol.324
, pp. 1203-1206
-
-
Wang, D.1
-
27
-
-
0023280341
-
Identification of intrinsic termination sites in vitro for RNA polymerase II within eukaryotic gene sequences
-
Reines, D., Wells, D., Chamberlin, M.J. & Kane, C.M. Identification of intrinsic termination sites in vitro for RNA polymerase II within eukaryotic gene sequences. J. Mol. Biol. 196, 299-312 (1987).
-
(1987)
J. Mol. Biol
, vol.196
, pp. 299-312
-
-
Reines, D.1
Wells, D.2
Chamberlin, M.J.3
Kane, C.M.4
-
28
-
-
0024370643
-
Transcription elongation factor SII (TFIIS) enables RNA polymerase II to elongate through a block to transcription in a human gene in vitro
-
Reines, D., Chamberlin, M.J. & Kane, C.M. Transcription elongation factor SII (TFIIS) enables RNA polymerase II to elongate through a block to transcription in a human gene in vitro. J. Biol. Chem. 264, 10799-10809 (1989).
-
(1989)
J. Biol. Chem
, vol.264
, pp. 10799-10809
-
-
Reines, D.1
Chamberlin, M.J.2
Kane, C.M.3
-
29
-
-
0036241663
-
Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo
-
Pokholok, D.K., Hannett, N.M. & Young, R.A. Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo. Mol. Cell 9, 799-809 (2002).
-
(2002)
Mol. Cell
, vol.9
, pp. 799-809
-
-
Pokholok, D.K.1
Hannett, N.M.2
Young, R.A.3
-
30
-
-
0034307008
-
Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription
-
Komarnitsky, P., Cho, E.J. & Buratowski, S. Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription. Genes Dev. 14, 2452-2460 (2000).
-
(2000)
Genes Dev
, vol.14
, pp. 2452-2460
-
-
Komarnitsky, P.1
Cho, E.J.2
Buratowski, S.3
-
31
-
-
33751090746
-
Phosphorylation and functions of the RNA polymerase II CTD
-
Phatnani, H.P. & Greenleaf, A.L. Phosphorylation and functions of the RNA polymerase II CTD. Genes Dev. 20, 2922-2936 (2006).
-
(2006)
Genes Dev
, vol.20
, pp. 2922-2936
-
-
Phatnani, H.P.1
Greenleaf, A.L.2
-
32
-
-
77953629213
-
Transcript elongation by RNA polymerase II
-
Selth, L.A., Sigurdsson, S. & Svejstrup, J.Q. Transcript elongation by RNA polymerase II. Annu. Rev. Biochem. 79, 271-293 (2010).
-
(2010)
Annu. Rev. Biochem
, vol.79
, pp. 271-293
-
-
Selth, L.A.1
Sigurdsson, S.2
Svejstrup, J.Q.3
-
33
-
-
84868224735
-
Human RECQL5 participates in the removal of endogenous DNA damage
-
Tadokoro, T. et al. Human RECQL5 participates in the removal of endogenous DNA damage. Mol. Biol. Cell 23, 4273-4285 (2012).
-
(2012)
Mol. Biol. Cell
, vol.23
, pp. 4273-4285
-
-
Tadokoro, T.1
-
34
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
Sding, J., Biegert, A. & Lupas, A.N. The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res. 33, W244-W248 (2005).
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Sding, J.1
Biegert, A.2
Lupas, A.N.3
-
35
-
-
0347361694
-
The ESS1 prolyl isomerase and its suppressor BYE1 interact with RNA pol II to inhibit transcription elongation in Saccharomyces cerevisiae
-
Wu, X., Rossettini, A. & Hanes, S.D. The ESS1 prolyl isomerase and its suppressor BYE1 interact with RNA pol II to inhibit transcription elongation in Saccharomyces cerevisiae. Genetics 165, 1687-1702 (2003).
-
(2003)
Genetics
, vol.165
, pp. 1687-1702
-
-
Wu, X.1
Rossettini, A.2
Hanes, S.D.3
-
36
-
-
34249947699
-
ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage
-
Matsuoka, S. et al. ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage. Science 316, 1160-1166 (2007).
-
(2007)
Science
, vol.316
, pp. 1160-1166
-
-
Matsuoka, S.1
-
37
-
-
0042626227
-
A conserved structural motif reveals the essential transcriptional repression function of Spen proteins and their role in developmental signaling
-
Ariyoshi, M. & Schwabe, J.W. A conserved structural motif reveals the essential transcriptional repression function of Spen proteins and their role in developmental signaling. Genes Dev. 17, 1909-1920 (2003).
-
(2003)
Genes Dev
, vol.17
, pp. 1909-1920
-
-
Ariyoshi, M.1
Schwabe, J.W.2
-
38
-
-
0033529243
-
DIO-1 is a gene involved in onset of apoptosis in vitro, whose misexpression disrupts limb development
-
Garca-Domingo, D. et al. DIO-1 is a gene involved in onset of apoptosis in vitro, whose misexpression disrupts limb development. Proc. Natl. Acad. Sci. USA 96, 7992-7997 (1999).
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 7992-7997
-
-
Garca-Domingo, D.1
-
39
-
-
84883759139
-
Structural insights into transcriptional repression by noncoding RNAs that bind to human Pol II
-
doi:10.1016/j.jmb.2012.08.024.
-
Kassube, S.A. et al. Structural insights into transcriptional repression by noncoding RNAs that bind to human Pol II. J. Mol. Biol. doi:10.1016/j.jmb. 2012.08.024. (2012).
-
(2012)
J. Mol. Biol.
-
-
Kassube, S.A.1
-
40
-
-
20544468931
-
Automated molecular microscopy: The new Leginon system
-
Suloway, C. et al. Automated molecular microscopy: the new Leginon system. J. Struct. Biol. 151, 41-60 (2005).
-
(2005)
J. Struct. Biol
, vol.151
, pp. 41-60
-
-
Suloway, C.1
-
41
-
-
60649103238
-
Appion: An integrated, database-driven pipeline to facilitate em image processing
-
Lander, G.C. et al. Appion: an integrated, database-driven pipeline to facilitate EM image processing. J. Struct. Biol. 166, 95-102 (2009).
-
(2009)
J. Struct. Biol
, vol.166
, pp. 95-102
-
-
Lander, G.C.1
-
42
-
-
0029916485
-
A new generation of the IMAGIC image processing system
-
van Heel, M., Harauz, G., Orlova, E.V., Schmidt, R. & Schatz, M. A new generation of the IMAGIC image processing system. J. Struct. Biol. 116, 17-24 (1996).
-
(1996)
J. Struct. Biol
, vol.116
, pp. 17-24
-
-
Van Heel, M.1
Harauz, G.2
Orlova, E.V.3
Schmidt, R.4
Schatz, M.5
-
43
-
-
44949165726
-
Image processing for electron microscopy single-particle analysis using XMIPP
-
Scheres, S.H., Nunez-Ramirez, R., Sorzano, C.O., Carazo, J.M. & Marabini, R. Image processing for electron microscopy single-particle analysis using XMIPP. Nat. Protoc. 3, 977-990 (2008).
-
(2008)
Nat. Protoc
, vol.3
, pp. 977-990
-
-
Scheres, S.H.1
Nunez-Ramirez, R.2
Sorzano, C.O.3
Carazo, J.M.4
Marabini, R.5
-
44
-
-
33845284275
-
The transform class in SPARX and EMAN2
-
Baldwin, P.R. & Penczek, P.A. The transform class in SPARX and EMAN2. J. Struct. Biol. 157, 250-261 (2007).
-
(2007)
J. Struct. Biol
, vol.157
, pp. 250-261
-
-
Baldwin, P.R.1
Penczek, P.A.2
-
45
-
-
33845332754
-
EMAN2: An extensible image processing suite for electron microscopy
-
Tang, G. et al. EMAN2: an extensible image processing suite for electron microscopy. J. Struct. Biol. 157, 38-46 (2007).
-
(2007)
J. Struct. Biol
, vol.157
, pp. 38-46
-
-
Tang, G.1
-
46
-
-
33846223946
-
Molecular architecture and conformational flexibility of human RNA polymerase II
-
Kostek, S.A. et al. Molecular architecture and conformational flexibility of human RNA polymerase II. Structure 14, 1691-1700 (2006).
-
(2006)
Structure
, vol.14
, pp. 1691-1700
-
-
Kostek, S.A.1
-
47
-
-
33845336533
-
Bsoft: Image processing and molecular modeling for electron microscopy
-
Heymann, J.B. & Belnap, D.M. Bsoft: image processing and molecular modeling for electron microscopy. J. Struct. Biol. 157, 3-18 (2007).
-
(2007)
J. Struct. Biol
, vol.157
, pp. 3-18
-
-
Heymann, J.B.1
Belnap, D.M.2
-
48
-
-
4444221565
-
UCSF Chimera - A visualization system for exploratory research and analysis
-
Pettersen, E.F. et al. UCSF Chimera-a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605-1612 (2004).
-
(2004)
J. Comput. Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
-
50
-
-
37549039510
-
A short history of SHELX
-
Sheldrick, G.M. A short history of SHELX. Acta Crystallogr. A 64, 112-122 (2008).
-
(2008)
Acta Crystallogr. A
, vol.64
, pp. 112-122
-
-
Sheldrick, G.M.1
-
51
-
-
0242460576
-
Generation representation and flow of phase information in structure determination: Recent developments in and around SHARP 2.0
-
Bricogne, G., Vonrhein, C., Flensburg, C., Schiltz, M. & Paciorek, W. Generation, representation and flow of phase information in structure determination: recent developments in and around SHARP 2.0. Acta Crystallogr. D Biol. Crystallogr. 59, 2023-2030 (2003).
-
(2003)
Acta Crystallogr. D Biol. Crystallogr
, vol.59
, pp. 2023-2030
-
-
Bricogne, G.1
Vonrhein, C.2
Flensburg, C.3
Schiltz, M.4
Paciorek, W.5
-
53
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P.D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 66, 213-221 (2010).
-
(2010)
Acta Crystallogr. D Biol. Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
-
54
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V.B. et al. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr. 66, 12-21 (2010).
-
(2010)
Acta Crystallogr. D Biol. Crystallogr
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
-
55
-
-
77958554597
-
Software for the high-throughput collection of SAXS data using an enhanced Blu-Ice/DCS control system
-
Classen, S. et al. Software for the high-throughput collection of SAXS data using an enhanced Blu-Ice/DCS control system. J. Synchrotron Radiat. 17, 774-781 (2010).
-
(2010)
J. Synchrotron Radiat
, vol.17
, pp. 774-781
-
-
Classen, S.1
-
56
-
-
68349097394
-
Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS)
-
Hura, G.L. et al. Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS). Nat. Methods 6, 606-612 (2009).
-
(2009)
Nat. Methods
, vol.6
, pp. 606-612
-
-
Hura, G.L.1
-
57
-
-
33645214738
-
ATSAS 2.1, a program package for small-angle scattering data analysis
-
Konarev, P.V., Petoukhov, M.V., Volkov, V.V. & Svergun, D.I. ATSAS 2.1, a program package for small-angle scattering data analysis. J. Appl. Crystallogr. 39, 277-286 (2006).
-
(2006)
J. Appl. Crystallogr
, vol.39
, pp. 277-286
-
-
Konarev, P.V.1
Petoukhov, M.V.2
Volkov, V.V.3
Svergun, D.I.4
-
58
-
-
77954280480
-
FoXS: A web server for rapid computation and fitting of SAXS profiles
-
Schneidman-Duhovny, D., Hammel, M. & Sali, A. FoXS: a web server for rapid computation and fitting of SAXS profiles. Nucleic Acids Res. 38, W540-W544 (2010).
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Schneidman-Duhovny, D.1
Hammel, M.2
Sali, A.3
|