-
1
-
-
0031811790
-
The CD1 family of lipid antigen-presenting molecules
-
Porcelli, S. A., Segelke, B. W., Sugita, M., Wilson, I. A., and Brenner, M. B. (1998) The CD1 family of lipid antigen-presenting molecules. Immunol. Today 19, 362-368
-
(1998)
Immunol. Today
, vol.19
, pp. 362-368
-
-
Porcelli, S.A.1
Segelke, B.W.2
Sugita, M.3
Wilson, I.A.4
Brenner, M.B.5
-
2
-
-
18844376903
-
Anatomy of CD1- lipid antigen complexes
-
Moody, D. B., Zajonc, D. M., and Wilson, I. A. (2005) Anatomy of CD1- lipid antigen complexes. Nat. Rev. Immunol. 5, 387-399
-
(2005)
Nat. Rev. Immunol
, vol.5
, pp. 387-399
-
-
Moody, D.B.1
Zajonc, D.M.2
Wilson, I.A.3
-
3
-
-
36448952375
-
CD1 antigen presentation. How it works
-
Barral, D. C., and Brenner, M. B. (2007) CD1 antigen presentation. How it works. Nat. Rev. Immunol. 7, 929-941
-
(2007)
Nat. Rev. Immunol
, vol.7
, pp. 929-941
-
-
Barral, D.C.1
Brenner, M.B.2
-
5
-
-
55849142528
-
Structural and functional aspects of lipid binding by CD1 molecules
-
Silk, J. D., Salio, M., Brown, J., Jones, E. Y., and Cerundolo, V. (2008) Structural and functional aspects of lipid binding by CD1 molecules. Annu. Rev. Cell Dev. Biol. 24, 369-395
-
(2008)
Annu. Rev. Cell Dev. Biol
, vol.24
, pp. 369-395
-
-
Silk, J.D.1
Salio, M.2
Brown, J.3
Jones, E.Y.4
Cerundolo, V.5
-
6
-
-
77249151524
-
Recent advances in processing and presentation of CD1 bound lipid antigens
-
Salio, M., Silk, J. D., and Cerundolo, V. (2010) Recent advances in processing and presentation of CD1 bound lipid antigens. Curr. Opin. Immunol. 22, 81-88
-
(2010)
Curr. Opin. Immunol
, vol.22
, pp. 81-88
-
-
Salio, M.1
Silk, J.D.2
Cerundolo, V.3
-
7
-
-
84857684717
-
Novel insights into lipid antigen presentation
-
De Libero, G., and Mori, L. (2012) Novel insights into lipid antigen presentation. Trends Immunol. 33, 103-111
-
(2012)
Trends Immunol
, vol.33
, pp. 103-111
-
-
De Libero, G.1
Mori, L.2
-
8
-
-
0030826423
-
Crystal structure of mouse CD1. An MHC-like fold with a large hydrophobic binding groove
-
Zeng, Z., Castaño, A. R., Segelke, B. W., Stura, E. A., Peterson, P. A., and Wilson, I. A. (1997) Crystal structure of mouse CD1. An MHC-like fold with a large hydrophobic binding groove. Science 277, 339-345
-
(1997)
Science
, vol.277
, pp. 339-345
-
-
Zeng, Z.1
Castaño, A.R.2
Segelke, B.W.3
Stura, E.A.4
Peterson, P.A.5
Wilson, I.A.6
-
9
-
-
0035984523
-
Structure of human CD1b with bound ligands at 2.3 Å, a maze for alkyl chains
-
Gadola, S. D., Zaccai, N. R., Harlos, K., Shepherd, D., Castro-Palomino, J. C., Ritter, G., Schmidt, R. R., Jones, E. Y., and Cerundolo, V. (2002) Structure of human CD1b with bound ligands at 2.3 Å, a maze for alkyl chains. Nat. Immunol. 3, 721-726
-
(2002)
Nat. Immunol
, vol.3
, pp. 721-726
-
-
Gadola, S.D.1
Zaccai, N.R.2
Harlos, K.3
Shepherd, D.4
Castro-Palomino, J.C.5
Ritter, G.6
Schmidt, R.R.7
Jones, E.Y.8
Cerundolo, V.9
-
10
-
-
0043198070
-
Crystal structure of CD1a in complex with a sulfatide self antigen at a resolution of 2.15 Å
-
Zajonc, D. M., Elsliger, M. A., Teyton, L., and Wilson, I. A. (2003) Crystal structure of CD1a in complex with a sulfatide self antigen at a resolution of 2.15 Å. Nat. Immunol. 4, 808-815
-
(2003)
Nat. Immunol
, vol.4
, pp. 808-815
-
-
Zajonc, D.M.1
Elsliger, M.A.2
Teyton, L.3
Wilson, I.A.4
-
11
-
-
23944479797
-
The crystal structure of human CD1d with and without α- galactosylceramide
-
Koch, M., Stronge, V. S., Shepherd, D., Gadola, S. D., Mathew, B., Ritter, G., Fersht, A. R., Besra, G. S., Schmidt, R. R., Jones, E. Y., and Cerundolo, V. (2005) The crystal structure of human CD1d with and without α-galactosylceramide. Nat. Immunol. 6, 819-826
-
(2005)
Nat. Immunol
, vol.6
, pp. 819-826
-
-
Koch, M.1
Stronge, V.S.2
Shepherd, D.3
Gadola, S.D.4
Mathew, B.5
Ritter, G.6
Fersht, A.R.7
Besra, G.S.8
Schmidt, R.R.9
Jones, E.Y.10
Cerundolo, V.11
-
12
-
-
13844255327
-
Molecular mechanism of lipopeptide presentation by CD1a
-
Zajonc, D. M., Crispin, M. D., Bowden, T. A., Young, D. C., Cheng, T. Y., Hu, J., Costello, C. E., Rudd, P. M., Dwek, R. A., Miller, M. J., Brenner, M. B., Moody, D. B., and Wilson, I. A. (2005) Molecular mechanism of lipopeptide presentation by CD1a. Immunity 22, 209-219
-
(2005)
Immunity
, vol.22
, pp. 209-219
-
-
Zajonc, D.M.1
Crispin, M.D.2
Bowden, T.A.3
Young, D.C.4
Cheng, T.Y.5
Hu, J.6
Costello, C.E.7
Rudd, P.M.8
Dwek, R.A.9
Miller, M.J.10
Brenner, M.B.11
Moody, D.B.12
Wilson, I.A.13
-
13
-
-
28544442722
-
Structural basis for CD1d presentation of a sulfatide derived from myelin and its implications for autoimmunity
-
Zajonc, D. M., Maricic, I., Wu, D., Halder, R., Roy, K., Wong, C. H., Kumar, V., and Wilson, I. A. (2005) Structural basis for CD1d presentation of a sulfatide derived from myelin and its implications for autoimmunity. J. Exp. Med. 202, 1517-1526
-
(2005)
J. Exp. Med
, vol.202
, pp. 1517-1526
-
-
Zajonc, D.M.1
Maricic, I.2
Wu, D.3
Halder, R.4
Roy, K.5
Wong, C.H.6
Kumar, V.7
Wilson, I.A.8
-
14
-
-
33747621666
-
Endogenous phosphatidylcholine and a long spacer ligand stabilize the lipid-binding groove of CD1b
-
Garcia-Alles, L. F., Versluis, K., Maveyraud, L., Vallina, A. T., Sansano, S., Bello, N. F., Gober, H. J., Guillet, V., de la Salle, H., Puzo, G., Mori, L., Heck, A. J., De Libero, G., and Mourey, L. (2006) Endogenous phosphatidylcholine and a long spacer ligand stabilize the lipid-binding groove of CD1b. EMBO J. 25, 3684-3692
-
(2006)
EMBO J.
, vol.25
, pp. 3684-3692
-
-
Garcia-Alles, L.F.1
Versluis, K.2
Maveyraud, L.3
Vallina, A.T.4
Sansano, S.5
Bello, N.F.6
Gober, H.J.7
Guillet, V.8
De La Salle, H.9
Puzo, G.10
Mori, L.11
Heck, A.J.12
De Libero, G.13
Mourey, L.14
-
15
-
-
56649109840
-
The crystal structure of avian CD1 reveals a smaller, more primordial antigenbinding pocket compared to mammalian CD1
-
Zajonc, D. M., Striegl, H., Dascher, C. C., and Wilson, I. A. (2008) The crystal structure of avian CD1 reveals a smaller, more primordial antigenbinding pocket compared to mammalian CD1. Proc. Natl. Acad. Sci. U.S.A. 105, 17925-17930
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 17925-17930
-
-
Zajonc, D.M.1
Striegl, H.2
Dascher, C.C.3
Wilson, I.A.4
-
16
-
-
77956206481
-
Crystal structure of bovine CD1b3 with endogenously bound ligands
-
Girardi, E., Wang, J., Mac, T. T., Versluis, C., Bhowruth, V., Besra, G., Heck, A. J., Van Rhijn, I., and Zajonc, D. M. (2010) Crystal structure of bovine CD1b3 with endogenously bound ligands. J. Immunol. 185, 376-386
-
(2010)
J. Immunol
, vol.185
, pp. 376-386
-
-
Girardi, E.1
Wang, J.2
Mac, T.T.3
Versluis, C.4
Bhowruth, V.5
Besra, G.6
Heck, A.J.7
Van Rhijn, I.8
Zajonc, D.M.9
-
17
-
-
78650113430
-
The 2.5 Å structure of CD1c in complex with a mycobacterial lipid reveals an open groove ideally suited for diverse antigen presentation
-
Scharf, L., Li, N. S., Hawk, A. J., Garzón, D., Zhang, T., Fox, L. M., Kazen, A. R., Shah, S., Haddadian, E. J., Gumperz, J. E., Saghatelian, A., Faraldo-Gómez, J. D., Meredith, S. C., Piccirilli, J. A., and Adams, E. J. (2010) The 2.5 Å structure of CD1c in complex with a mycobacterial lipid reveals an open groove ideally suited for diverse antigen presentation. Immunity 33, 853-862
-
(2010)
Immunity
, vol.33
, pp. 853-862
-
-
Scharf, L.1
Li, N.S.2
Hawk, A.J.3
Garzón, D.4
Zhang, T.5
Fox, L.M.6
Kazen, A.R.7
Shah, S.8
Haddadian, E.J.9
Gumperz, J.E.10
Saghatelian, A.11
Faraldo-Gómez, J.D.12
Meredith, S.C.13
Piccirilli, J.A.14
Adams, E.J.15
-
18
-
-
80051987020
-
Crystal structure of human CD1e reveals a groove suited for lipid-exchange processes
-
Garcia-Alles, L. F., Giacometti, G., Versluis, C., Maveyraud, L., de Paepe, D., Guiard, J., Tranier, S., Gilleron, M., Prandi, J., Hanau, D., Heck, A. J., Mori, L., De Libero, G., Puzo, G., Mourey, L., and de la Salle, H. (2011) Crystal structure of human CD1e reveals a groove suited for lipid-exchange processes. Proc. Natl. Acad. Sci. U.S.A. 108, 13230-13235
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 13230-13235
-
-
Garcia-Alles, L.F.1
Giacometti, G.2
Versluis, C.3
Maveyraud, L.4
De Paepe, D.5
Guiard, J.6
Tranier, S.7
Gilleron, M.8
Prandi, J.9
Hanau, D.10
Heck, A.J.11
Mori, L.12
De Libero, G.13
Puzo, G.14
Mourey, L.15
De La Salle, H.16
-
19
-
-
70450224660
-
Predicted structural basis for CD1c presentation of mycobacterial branched polyketides and long lipopeptide antigens
-
Garzón, D., Bond, P. J., and Faraldo-Gómez, J. D. (2009) Predicted structural basis for CD1c presentation of mycobacterial branched polyketides and long lipopeptide antigens. Mol. Immunol. 47, 253-260
-
(2009)
Mol. Immunol
, vol.47
, pp. 253-260
-
-
Garzón, D.1
Bond, P.J.2
Faraldo-Gómez, J.D.3
-
20
-
-
0035690582
-
CD1 trafficking: Invariant chain gives a new twist to the tale
-
Moody, D. B., and Porcelli, S. A. (2001) CD1 trafficking: invariant chain gives a new twist to the tale. Immunity 15, 861-865
-
(2001)
Immunity
, vol.15
, pp. 861-865
-
-
Moody, D.B.1
Porcelli, S.A.2
-
21
-
-
0037084102
-
Intracellular trafficking pathway of newly synthesized CD1b molecules
-
Briken, V., Jackman, R. M., Dasgupta, S., Hoening, S., and Porcelli, S. A. (2002) Intracellular trafficking pathway of newly synthesized CD1b molecules. EMBO J. 21, 825-834
-
(2002)
EMBO J.
, vol.21
, pp. 825-834
-
-
Briken, V.1
Jackman, R.M.2
Dasgupta, S.3
Hoening, S.4
Porcelli, S.A.5
-
22
-
-
20644445206
-
Recognition of lipid antigens by T cells
-
De Libero, G., and Mori, L. (2005) Recognition of lipid antigens by T cells. Nat. Rev. Immunol. 5, 485-496
-
(2005)
Nat. Rev. Immunol
, vol.5
, pp. 485-496
-
-
De Libero, G.1
Mori, L.2
-
23
-
-
0028970661
-
TAP-independent, β 2-microglobulin-dependent surface expression of functional mouse CD1.1
-
Brutkiewicz, R. R., Bennink, J. R., Yewdell, J. W., and Bendelac, A. (1995) TAP-independent, β 2-microglobulin-dependent surface expression of functional mouse CD1.1. J. Exp. Med. 182, 1913-1919
-
(1995)
J. Exp. Med
, vol.182
, pp. 1913-1919
-
-
Brutkiewicz, R.R.1
Bennink, J.R.2
Yewdell, J.W.3
Bendelac, A.4
-
24
-
-
1842338714
-
Analysis of the requirement for β 2-microglobulin for expression and formation of human CD1 antigens
-
Bauer, A., Hüttinger, R., Staffler, G., Hansmann, C., Schmidt, W., Majdic, O., Knapp, W., and Stockinger, H. (1997) Analysis of the requirement for β 2-microglobulin for expression and formation of human CD1 antigens. Eur. J. Immunol. 27, 1366-1373
-
(1997)
Eur. J. Immunol
, vol.27
, pp. 1366-1373
-
-
Bauer, A.1
Hüttinger, R.2
Staffler, G.3
Hansmann, C.4
Schmidt, W.5
Majdic, O.6
Knapp, W.7
Stockinger, H.8
-
25
-
-
0031227791
-
Assembly and retention of CD1b heavy chains in the endoplasmic reticulum
-
Sugita, M., Porcelli, S. A., and Brenner, M. B. (1997) Assembly and retention of CD1b heavy chains in the endoplasmic reticulum. J. Immunol. 159, 2358-2365
-
(1997)
J. Immunol
, vol.159
, pp. 2358-2365
-
-
Sugita, M.1
Porcelli, S.A.2
Brenner, M.B.3
-
26
-
-
0345425612
-
Analysis of the early biogenesis of CD1b Involvement of the chaperones calnexin and calreticulin, the proteasome and β(2)-microglobulin
-
Hüttinger, R., Staffler, G., Majdic, O., and Stockinger, H. (1999) Analysis of the early biogenesis of CD1b. Involvement of the chaperones calnexin and calreticulin, the proteasome and β(2)-microglobulin. Int. Immunol. 11, 1615-1623
-
(1999)
Int. Immunol
, vol.11
, pp. 1615-1623
-
-
Hüttinger, R.1
Staffler, G.2
Majdic, O.3
Stockinger, H.4
-
27
-
-
0037160108
-
Calnexin, calreticulin, and ERp57 cooperate in disulfide bond formation in human CD1d heavy chain
-
Kang, S. J., and Cresswell, P. (2002) Calnexin, calreticulin, and ERp57 cooperate in disulfide bond formation in human CD1d heavy chain. J. Biol. Chem. 277, 44838-44844
-
(2002)
J. Biol. Chem
, vol.277
, pp. 44838-44844
-
-
Kang, S.J.1
Cresswell, P.2
-
28
-
-
0030006882
-
Cytoplasmic tail-dependent localization of CD1b antigen-presenting molecules to MIICs
-
Sugita, M., Jackman, R. M., van Donselaar, E., Behar, S. M., Rogers, R. A., Peters, P. J., Brenner, M. B., and Porcelli, S. A. (1996) Cytoplasmic tail-dependent localization of CD1b antigen-presenting molecules to MIICs. Science 273, 349-352
-
(1996)
Science
, vol.273
, pp. 349-352
-
-
Sugita, M.1
Jackman, R.M.2
Van Donselaar, E.3
Behar, S.M.4
Rogers, R.A.5
Peters, P.J.6
Brenner, M.B.7
Porcelli, S.A.8
-
29
-
-
0034172885
-
Pathways for lipid antigen presentation by CD1 molecules. Nowhere for intracellular pathogens to hide
-
Sugita, M., Peters, P. J., and Brenner, M. B. (2000) Pathways for lipid antigen presentation by CD1 molecules. Nowhere for intracellular pathogens to hide. Traffic 1, 295-300
-
(2000)
Traffic
, vol.1
, pp. 295-300
-
-
Sugita, M.1
Peters, P.J.2
Brenner, M.B.3
-
30
-
-
0035092226
-
CD1a molecules traffic through the early recycling endosomal pathway in human Langerhans cells
-
Salamero, J., Bausinger, H., Mommaas, A. M., Lipsker, D., Proamer, F., Cazenave, J. P., Goud, B., de la Salle, H., and Hanau, D. (2001) CD1a molecules traffic through the early recycling endosomal pathway in human Langerhans cells. J. Invest. Dermatol. 116, 401-408
-
(2001)
J. Invest. Dermatol
, vol.116
, pp. 401-408
-
-
Salamero, J.1
Bausinger, H.2
Mommaas, A.M.3
Lipsker, D.4
Proamer, F.5
Cazenave, J.P.6
Goud, B.7
De La Salle, H.8
Hanau, D.9
-
31
-
-
1042278901
-
New insights into pathways for CD1-mediated antigen presentation
-
Sugita, M., Cernadas, M., and Brenner, M. B. (2004) New insights into pathways for CD1-mediated antigen presentation. Curr. Opin. Immunol. 16, 90-95
-
(2004)
Curr. Opin. Immunol
, vol.16
, pp. 90-95
-
-
Sugita, M.1
Cernadas, M.2
Brenner, M.B.3
-
32
-
-
77949324059
-
Early recycling compartment trafficking of CD1a is essential for its intersection and presentation of lipid antigens
-
Cernadas, M., Cavallari, M., Watts, G., Mori, L., De Libero, G., and Brenner, M. B. (2010) Early recycling compartment trafficking of CD1a is essential for its intersection and presentation of lipid antigens. J. Immunol. 184, 1235-1241
-
(2010)
J. Immunol
, vol.184
, pp. 1235-1241
-
-
Cernadas, M.1
Cavallari, M.2
Watts, G.3
Mori, L.4
De Libero, G.5
Brenner, M.B.6
-
33
-
-
1142263116
-
Saposins facilitate CD1d-restricted presentation of an exogenous lipid antigen to T cells
-
Kang, S. J., and Cresswell, P. (2004) Saposins facilitate CD1d-restricted presentation of an exogenous lipid antigen to T cells. Nat. Immunol. 5, 175-181
-
(2004)
Nat. Immunol
, vol.5
, pp. 175-181
-
-
Kang, S.J.1
Cresswell, P.2
-
34
-
-
10744232076
-
Saposin C is required for lipid presentation by human CD1b
-
Winau, F., Schwierzeck, V., Hurwitz, R., Remmel, N., Sieling, P. A., Modlin, R. L., Porcelli, S. A., Brinkmann, V., Sugita, M., Sandhoff, K., Kaufmann, S. H., and Schaible, U. E. (2004) Saposin C is required for lipid presentation by human CD1b. Nat. Immunol. 5, 169-174
-
(2004)
Nat. Immunol
, vol.5
, pp. 169-174
-
-
Winau, F.1
Schwierzeck, V.2
Hurwitz, R.3
Remmel, N.4
Sieling, P.A.5
Modlin, R.L.6
Porcelli, S.A.7
Brinkmann, V.8
Sugita, M.9
Sandhoff, K.10
Kaufmann, S.H.11
Schaible, U.E.12
-
35
-
-
9144256638
-
Editing of CD1d-bound lipid antigens by endosomal lipid transfer proteins
-
Zhou, D., Cantu, C., 3rd, Sagiv, Y., Schrantz, N., Kulkarni, A. B., Qi, X., Mahuran, D. J., Morales, C. R., Grabowski, G. A., Benlagha, K., Savage, P., Bendelac, A., and Teyton, L. (2004) Editing of CD1d-bound lipid antigens by endosomal lipid transfer proteins. Science 303, 523-527
-
(2004)
Science
, vol.303
, pp. 523-527
-
-
Zhou, D.1
Cantu Iii, C.2
Sagiv, Y.3
Schrantz, N.4
Kulkarni, A.B.5
Qi, X.6
Mahuran, D.J.7
Morales, C.R.8
Grabowski, G.A.9
Benlagha, K.10
Savage, P.11
Bendelac, A.12
Teyton, L.13
-
36
-
-
34248338325
-
Saposin B is the dominant saposin that facilitates lipid binding to human CD1d molecules
-
Yuan, W., Qi, X., Tsang, P., Kang, S. J., Illarionov, P. A., Illaniorov, P. A., Besra, G. S., Gumperz, J., and Cresswell, P. (2007) Saposin B is the dominant saposin that facilitates lipid binding to human CD1d molecules. Proc. Natl. Acad. Sci. U.S.A. 104, 5551-5556
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 5551-5556
-
-
Yuan, W.1
Qi, X.2
Tsang, P.3
Kang, S.J.4
Illarionov, P.A.5
Illaniorov, P.A.6
Besra, G.S.7
Gumperz, J.8
Cresswell, P.9
-
37
-
-
0032033389
-
Molecular interaction of CD1b with lipoglycan antigens
-
Ernst, W. A., Maher, J., Cho, S., Niazi, K. R., Chatterjee, D., Moody, D. B., Besra, G. S., Watanabe, Y., Jensen, P. E., Porcelli, S. A., Kronenberg, M., and Modlin, R. L. (1998) Molecular interaction of CD1b with lipoglycan antigens. Immunity 8, 331-340
-
(1998)
Immunity
, vol.8
, pp. 331-340
-
-
Ernst, W.A.1
Maher, J.2
Cho, S.3
Niazi, K.R.4
Chatterjee, D.5
Moody, D.B.6
Besra, G.S.7
Watanabe, Y.8
Jensen, P.E.9
Porcelli, S.A.10
Kronenberg, M.11
Modlin, R.L.12
-
38
-
-
33746276392
-
Role of lipid trimming and CD1 groove size in cellular antigen presentation
-
Cheng, T. Y., Relloso, M., Van Rhijn, I., Young, D. C., Besra, G. S., Briken, V., Zajonc, D. M., Wilson, I. A., Porcelli, S., and Moody, D. B. (2006) Role of lipid trimming and CD1 groove size in cellular antigen presentation. EMBO J. 25, 2989-2999
-
(2006)
EMBO J.
, vol.25
, pp. 2989-2999
-
-
Cheng, T.Y.1
Relloso, M.2
Van Rhijn, I.3
Young, D.C.4
Besra, G.S.5
Briken, V.6
Zajonc, D.M.7
Wilson, I.A.8
Porcelli, S.9
Moody, D.B.10
-
39
-
-
44649201437
-
PH-dependent interdomain tethers of CD1b regulate its antigen capture
-
Relloso, M., Cheng, T. Y., Im, J. S., Parisini, E., Roura-Mir, C., DeBono, C., Zajonc, D. M., Murga, L. F., Ondrechen, M. J., Wilson, I. A., Porcelli, S. A., and Moody, D. B. (2008) pH-dependent interdomain tethers of CD1b regulate its antigen capture. Immunity 28, 774-786
-
(2008)
Immunity
, vol.28
, pp. 774-786
-
-
Relloso, M.1
Cheng, T.Y.2
Im, J.S.3
Parisini, E.4
Roura-Mir, C.5
Debono, C.6
Zajonc, D.M.7
Murga, L.F.8
Ondrechen, M.J.9
Wilson, I.A.10
Porcelli, S.A.11
Moody, D.B.12
-
40
-
-
33646556732
-
Functional CD1a is stabilized by exogenous lipids
-
Manolova, V., Kistowska, M., Paoletti, S., Baltariu, G. M., Bausinger, H., Hanau, D., Mori, L., and De Libero, G. (2006) Functional CD1a is stabilized by exogenous lipids. Eur. J. Immunol. 36, 1083-1092
-
(2006)
Eur. J. Immunol
, vol.36
, pp. 1083-1092
-
-
Manolova, V.1
Kistowska, M.2
Paoletti, S.3
Baltariu, G.M.4
Bausinger, H.5
Hanau, D.6
Mori, L.7
De Libero, G.8
-
41
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips, J. C., Braun, R., Wang, W., Gumbart, J., Tajkhorshid, E., Villa, E., Chipot, C., Skeel, R. D., Kalé, L., and Schulten, K. (2005) Scalable molecular dynamics with NAMD. J. Comput. Chem. 26, 1781-1802
-
(2005)
J. Comput. Chem
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kalé, L.9
Schulten, K.10
-
42
-
-
46249092554
-
GROMACS 4 Algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
Hess, B., Kutzner, C., Van der Spoel, D., and Lindahl, E. (2008)GROMACS 4. Algorithms for highly efficient, load-balanced, and scalable molecular simulation. J. Chem. Theory Comput. 4, 435-447
-
(2008)
J. Chem. Theory Comput
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
43
-
-
0030844208
-
Molecular dynamics simulation of unsaturated lipid bilayers at low hydration: Parameterization and comparison with diffraction studies
-
Feller, S. E., Yin, D., Pastor, R. W., and MacKerell, A. D., Jr. (1997) Molecular dynamics simulation of unsaturated lipid bilayers at low hydration: parameterization and comparison with diffraction studies. Biophys. J. 73, 2269-2279
-
(1997)
Biophys. J.
, vol.73
, pp. 2269-2279
-
-
Feller, S.E.1
Yin, D.2
Pastor, R.W.3
MacKerell Jr., A.D.4
-
44
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell, A. D., Bashford, D., Bellott, Dunbrack, R. L., Evanseck, J. D., Field, M. J., Fischer, S., Gao, J., Guo, H., Ha, S., Joseph-McCarthy, D., Kuchnir, L., Kuczera, K., Lau, F. T. K., Mattos, C., Michnick, S., Ngo, T., Nguyen, D. T., Prodhom, B., Reiher, W. E., Roux, B., Schlenkrich, M., Smith, J. C., Stote, R., Straub, J., Watanabe, M., Wiorkiewicz-Kuczera, J., Yin, D., and Karplus, M. (1998) All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B 102, 3586-3616
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
MacKerell, A.D.1
Bashford, D.2
Bellott Dunbrack, R.L.3
Evanseck, J.D.4
Field, M.J.5
Fischer, S.6
Gao, J.7
Guo, H.8
Ha, S.9
Joseph-Mccarthy, D.10
Kuchnir, L.11
Kuczera, K.12
Lau, F.T.K.13
Mattos, C.14
Michnick, S.15
Ngo, T.16
Nguyen, D.T.17
Prodhom, B.18
Reiher, W.E.19
Roux, B.20
Schlenkrich, M.21
Smith, J.C.22
Stote, R.23
Straub, J.24
Watanabe, M.25
Wiorkiewicz-Kuczera, J.26
Yin, D.27
Karplus, M.28
more..
-
45
-
-
77953513118
-
Improved side-chain torsion potentials for the Amber ff99SB protein force field
-
Lindorff-Larsen, K., Piana, S., Palmo, K., Maragakis, P., Klepeis, J. L., Dror, R. O., and Shaw, D. E. (2010) Improved side-chain torsion potentials for the Amber ff99SB protein force field. Proteins 78, 1950-1958
-
(2010)
Proteins
, vol.78
, pp. 1950-1958
-
-
Lindorff-Larsen, K.1
Piana, S.2
Palmo, K.3
Maragakis, P.4
Klepeis, J.L.5
Dror, R.O.6
Shaw, D.E.7
-
46
-
-
0035913529
-
Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides
-
Kaminski, G. A., Friesner, R. A., Tirado-Rives, J., and Jorgensen, W. L. (2001) Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides. J. Phys. Chem. B 105, 6474-6487
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 6474-6487
-
-
Kaminski, G.A.1
Friesner, R.A.2
Tirado-Rives, J.3
Jorgensen, W.L.4
-
47
-
-
67650500988
-
CHARMM: The biomolecular simulation program
-
Brooks, B. R., Brooks, C. L., Mackerell, A. D., Nilsson, L., Petrella, R. J., Roux, B., Won, Y., Archontis, G., Bartels, C., Boresch, S., Caflisch, A., Caves, L., Cui, Q., Dinner, A. R., Feig, M., Fischer, S., Gao, J., Hodoscek, M., Im, W., Kuczera, K., Lazaridis, T., Ma, J., Ovchinnikov, V., Paci, E., Pastor, R. W., Post, C. B., Pu, J. Z., Schaefer, M., Tidor, B., Venable, R. M., Woodcock, H. L., Wu, X., Yang, W., York, D. M., and Karplus, M. (2009) CHARMM: The biomolecular simulation program. J. Comp. Chem. 30, 1545-1614
-
(2009)
J. Comp. Chem
, vol.30
, pp. 1545-1614
-
-
Brooks, B.R.1
Brooks, C.L.2
MacKerell, A.D.3
Nilsson, L.4
Petrella, R.J.5
Roux, B.6
Won, Y.7
Archontis, G.8
Bartels, C.9
Boresch, S.10
Caflisch, A.11
Caves, L.12
Cui, Q.13
Dinner, A.R.14
Feig, M.15
Fischer, S.16
Gao, J.17
Hodoscek, M.18
Im, W.19
Kuczera, K.20
Lazaridis, T.21
Ma, J.22
Ovchinnikov, V.23
Paci, E.24
Pastor, R.W.25
Post, C.B.26
Pu, J.Z.27
Schaefer, M.28
Tidor, B.29
Venable, R.M.30
Woodcock, H.L.31
Wu, X.32
Yang, W.33
York, D.M.34
Karplus, M.35
more..
-
48
-
-
50149097363
-
Comparative protein structure modeling using MODELLER
-
Eswar, N., Webb, B., Marti-Renom, M. A., Madhusudhan, M. S., Eramian, D., Shen, M. Y., Pieper, U., and Sali, A. (2006) Comparative protein structure modeling using MODELLER. Curr. Protoc. Prot. Sci. 50, 2.9.1-2.9.31
-
(2006)
Curr. Protoc. Prot. Sci
, vol.50
, pp. 2901-2931
-
-
Eswar, N.1
Webb, B.2
Marti-Renom, M.A.3
Madhusudhan, M.S.4
Eramian, D.5
Shen, M.Y.6
Pieper, U.7
Sali, A.8
-
49
-
-
33846550599
-
Comparative molecular dynamics analysis of tapasin-dependent and -independent MHC class i alleles
-
Sieker, F., Springer, S., and Zacharias, M. (2007) Comparative molecular dynamics analysis of tapasin-dependent and -independent MHC class I alleles. Protein Sci. 16, 299-308
-
(2007)
Protein Sci
, vol.16
, pp. 299-308
-
-
Sieker, F.1
Springer, S.2
Zacharias, M.3
-
50
-
-
48049122834
-
Differential tapasin dependence of MHC class i molecules correlates with conformational changes upon peptide dissociation. A molecular dynamics simulation study
-
Sieker, F., Straatsma, T. P., Springer, S., and Zacharias, M. (2008) Differential tapasin dependence of MHC class I molecules correlates with conformational changes upon peptide dissociation. A molecular dynamics simulation study. Mol. Immunol. 45, 3714-3722
-
(2008)
Mol. Immunol
, vol.45
, pp. 3714-3722
-
-
Sieker, F.1
Straatsma, T.P.2
Springer, S.3
Zacharias, M.4
-
51
-
-
80355148422
-
Tapasin dependence of major histocompatibility complex class i molecules correlates with their conformational flexibility
-
Garstka, M. A., Fritzsche, S., Lenart, I., Hein, Z., Jankevicius, G., Boyle, L. H., Elliott, T., Trowsdale, J., Antoniou, A. N., Zacharias, M., and Springer, S. (2011) Tapasin dependence of major histocompatibility complex class I molecules correlates with their conformational flexibility. FASEB J. 25, 3989-3998
-
(2011)
FASEB J.
, vol.25
, pp. 3989-3998
-
-
Garstka, M.A.1
Fritzsche, S.2
Lenart, I.3
Hein, Z.4
Jankevicius, G.5
Boyle, L.H.6
Elliott, T.7
Trowsdale, J.8
Antoniou, A.N.9
Zacharias, M.10
Springer, S.11
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