메뉴 건너뛰기




Volumn 6, Issue 1, 2013, Pages

Control and target gene selection for studies on UV-induced genotoxicity in whales

Author keywords

Gene expression; HSP70; Internal control genes; KIN; P53; qPCR normalization; Skin biopsy; Solar ultraviolet radiation; Whales

Indexed keywords

CETACEA; MUS; PHYSETERIDAE;

EID: 84880017539     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-6-264     Document Type: Article
Times cited : (7)

References (50)
  • 1
    • 79751502334 scopus 로고    scopus 로고
    • Effects of UV radiation on aquatic ecosystems and interactions with climate change
    • 10.1039/c0pp90036b
    • Effects of UV radiation on aquatic ecosystems and interactions with climate change. Hader DP, Helbling EW, Williamson CE, Worrest RC, Photoch Photobio Sci 2011 10 242 260 10.1039/c0pp90036b
    • (2011) Photoch Photobio Sci , vol.10 , pp. 242-260
    • Hader, D.P.1    Helbling, E.W.2    Williamson, C.E.3    Worrest, R.C.4
  • 5
    • 77649181270 scopus 로고    scopus 로고
    • UV radiation in marine ectotherms: Molecular effects and responses
    • 10.1016/j.aquatox.2009.12.002 20047765
    • UV radiation in marine ectotherms: molecular effects and responses. Dahms HU, Lee JS, Aquat Toxicol 2010 97 3 14 10.1016/j.aquatox.2009.12.002 20047765
    • (2010) Aquat Toxicol , vol.97 , pp. 3-14
    • Dahms, H.U.1    Lee, J.S.2
  • 6
    • 84860681436 scopus 로고    scopus 로고
    • Defining the limits of physiological plasticity: How gene expression can assess and predict the consequences of ocean change
    • 10.1098/rstb.2012.0019
    • Defining the limits of physiological plasticity: how gene expression can assess and predict the consequences of ocean change. Evans TG, Hofmann GE, Trans R Soc Lond B Biol Sci 2012 367 1596 1733 45 10.1098/rstb.2012.0019
    • (2012) Trans R Soc Lond B Biol Sci , vol.367 , Issue.1596 , pp. 1733-1745
    • Evans, T.G.1    Hofmann, G.E.2
  • 7
    • 0034707047 scopus 로고    scopus 로고
    • The DNA damage response: Putting checkpoints in perspective
    • 10.1038/35044005 11100718
    • The DNA damage response: putting checkpoints in perspective. Zhou BB, Elledge SJ, Nature 2000 408 433 439 10.1038/35044005 11100718
    • (2000) Nature , vol.408 , pp. 433-439
    • Zhou, B.B.1    Elledge, S.J.2
  • 8
    • 70349438994 scopus 로고    scopus 로고
    • Tumour suppression by p53: A role for the DNA damage response?
    • 19730431
    • Tumour suppression by p53: a role for the DNA damage response? Week DW, Nat Rev Cancer 2009 9 714 723 19730431
    • (2009) Nat Rev Cancer , vol.9 , pp. 714-723
    • Week, D.W.1
  • 9
    • 70349438905 scopus 로고    scopus 로고
    • The expanding universe of p53 targets
    • 10.1038/nrc2730 19776742
    • The expanding universe of p53 targets. Menendez D, Inga A, Resnick MA, Nat Rev Cancer 2009 9 724 737 10.1038/nrc2730 19776742
    • (2009) Nat Rev Cancer , vol.9 , pp. 724-737
    • Menendez, D.1    Inga, A.2    Resnick, M.A.3
  • 10
    • 77649235913 scopus 로고    scopus 로고
    • How to do successful gene expression analysis using real-time PCR
    • 10.1016/j.ymeth.2009.11.001 19969088
    • How to do successful gene expression analysis using real-time PCR. Derveaux S, Vandesompele J, Hellemans J, Methods 2010 50 227 230 10.1016/j.ymeth.2009.11.001 19969088
    • (2010) Methods , vol.50 , pp. 227-230
    • Derveaux, S.1    Vandesompele, J.2    Hellemans, J.3
  • 11
    • 77649212939 scopus 로고    scopus 로고
    • A practical approach to RT-qPCR-Publishing data that conform to the MIQE guidelines
    • 10.1016/j.ymeth.2010.01.005 20215014
    • A practical approach to RT-qPCR-Publishing data that conform to the MIQE guidelines. Taylor S, Wakem M, Dijkman G, Alsarraj M, Nguyen M, Methods 2010 50 1 5 10.1016/j.ymeth.2010.01.005 20215014
    • (2010) Methods , vol.50 , pp. 191-195
    • Taylor, S.1    Wakem, M.2    Dijkman, G.3    Alsarraj, M.4    Nguyen, M.5
  • 12
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • research0034.1-0034.11
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F, Genome Biol 2002 3 7 research0034.1-0034.11. http://genomebiology.com/content/3/7/RESEARCH0034
    • (2002) Genome Biol , vol.3 , Issue.7
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 13
    • 33750034442 scopus 로고    scopus 로고
    • Selection of reference genes for quantitative RT-PCR studies in striped dolphin (Stenella coeruleoalba) skin biopsies
    • DOI 10.1186/1471-2199-7-32
    • Selection of reference genes for quantitative RT-PCR studies in striped dolphin (Stenella coeruleoalba) skin biopsies. Spinsanti G, Panti C, Lazzeri E, Marsili L, Casini S, Frati F, Maria Fossi CM, BMC Mol Biol 2006 7 32 10.1186/1471-2199-7-32 16984641 (Pubitemid 44566858)
    • (2006) BMC Molecular Biology , vol.7 , pp. 32
    • Spinsanti, G.1    Panti, C.2    Lazzeri, E.3    Marsili, L.4    Casini, S.5    Frati, F.6    Fossi, C.M.7
  • 14
    • 41549102811 scopus 로고    scopus 로고
    • Selection of reliable reference genes for qRT-PCR studies on cetacean fibroblast cultures exposed to OCs, PBDEs, and 17[beta]-estradiol
    • 10.1016/j.aquatox.2008.01.018 18339435
    • Selection of reliable reference genes for qRT-PCR studies on cetacean fibroblast cultures exposed to OCs, PBDEs, and 17[beta]-estradiol. Spinsanti G, Panti P, Bucalossi D, Marsili L, Casini S, Frati F, Fossi MC, Aquat Toxicol 2008 87 178 186 10.1016/j.aquatox.2008.01.018 18339435
    • (2008) Aquat Toxicol , vol.87 , pp. 178-186
    • Spinsanti, G.1    Panti, P.2    Bucalossi, D.3    Marsili, L.4    Casini, S.5    Frati, F.6    Fossi, M.C.7
  • 17
    • 67650078254 scopus 로고    scopus 로고
    • Copy number gain and oncogenic activity of YWHAZ/14-3-3ζ in head and neck squamous cell carcinoma
    • 10.1002/ijc.24346 19405126
    • Copy number gain and oncogenic activity of YWHAZ/14-3-3ζ in head and neck squamous cell carcinoma. Lin M, Morrison CD, Jones S, Mohamed N, Bacher J, Plass C, Int J Cancer 2009 125 3 603 611 10.1002/ijc.24346 19405126
    • (2009) Int J Cancer , vol.125 , Issue.3 , pp. 603-611
    • Lin, M.1    Morrison, C.D.2    Jones, S.3    Mohamed, N.4    Bacher, J.5    Plass, C.6
  • 18
    • 79959226194 scopus 로고    scopus 로고
    • On the functional diversity of glyceraldehyde-3-phosphate dehydrogenase: Biochemical mechanisms and regulatory control
    • 10.1016/j.bbagen.2011.05.010 21640161
    • On the functional diversity of glyceraldehyde-3-phosphate dehydrogenase: Biochemical mechanisms and regulatory control. Sirover MA, Biochim Biophys Acta 2011 1810 741 751 10.1016/j.bbagen.2011.05.010 21640161
    • (2011) Biochim Biophys Acta , vol.1810 , pp. 741-751
    • Sirover, M.A.1
  • 19
    • 0033983951 scopus 로고    scopus 로고
    • Variation in epidermal housekeeping gene expression in different pathological states
    • Variation in epidermal housekeeping gene expression in different. Wu YY, Rees JL, Acta Derm Venereol 2000 80 2 3 10.1080/000155500750012397 10721821 (Pubitemid 30110837)
    • (2000) Acta Dermato-Venereologica , vol.80 , Issue.1 , pp. 2-3
    • Wu Yih-Yiing1    Rees, J.L.2
  • 20
    • 0025837058 scopus 로고
    • Immediate and delayed molecular response of human keratinocytes to solar-simulated irradiation
    • 1656141
    • Immediate and delayed molecular response of human keratinocytes to solar-simulated irradiation. Garmyn M, Yaar M, Holbrook N, Gilchrest BA, Lab Invest 1991 65 4 471 478 1656141
    • (1991) Lab Invest , vol.65 , Issue.4 , pp. 471-478
    • Garmyn, M.1    Yaar, M.2    Holbrook, N.3    Gilchrest, B.A.4
  • 22
    • 17044387386 scopus 로고    scopus 로고
    • Hsp70 chaperones: Cellular functions and molecular mechanism
    • 10.1007/s00018-004-4464-6
    • Hsp70 chaperones: Cellular functions and molecular mechanism. Mayer MP, Bukau B, CMLS Cell Mol Life Sci 2005 62 670 684 10.1007/s00018-004-4464-6
    • (2005) CMLS Cell Mol Life Sci , vol.62 , pp. 670-684
    • Mayer, M.P.1    Bukau, B.2
  • 23
    • 80053144772 scopus 로고    scopus 로고
    • Novel mechanism of Hsp70 chaperone-mediated prevention of polyglutamine aggregates in a cellular model of huntington disease
    • 10.1093/hmg/ddr314 21775503
    • Novel mechanism of Hsp70 chaperone-mediated prevention of polyglutamine aggregates in a cellular model of huntington disease. Guzhova IV, Lazarev VF, Kaznacheeva AV, Ippolitova MV, Muronetz VI, Kinev AV, Margulis BA, Hum Mol Genet 2011 20 3953 3963 10.1093/hmg/ddr314 21775503
    • (2011) Hum Mol Genet , vol.20 , pp. 3953-3963
    • Guzhova, I.V.1    Lazarev, V.F.2    Kaznacheeva, A.V.3    Ippolitova, M.V.4    Muronetz, V.I.5    Kinev, A.V.6    Margulis, B.A.7
  • 25
    • 0025777354 scopus 로고
    • Heat shock, stress proteins, chaperones, and proteotoxicity
    • Heat shock, stress proteins, chaperones, and proteotoxicity. Hightower LE, Cell 1991 66 191 197 10.1016/0092-8674(91)90611-2 1855252 (Pubitemid 121001359)
    • (1991) Cell , vol.66 , Issue.2 , pp. 191-197
    • Hightower, L.E.1
  • 26
    • 67149133632 scopus 로고    scopus 로고
    • Heat shock proteins and immune system
    • 10.1189/jlb.0109005 19276179
    • Heat shock proteins and immune system. Tsang MF, Gao B, J Leukocyte Biol 2009 85 905 910 10.1189/jlb.0109005 19276179
    • (2009) J Leukocyte Biol , vol.85 , pp. 905-910
    • Tsang, M.F.1    Gao, B.2
  • 28
    • 77953219808 scopus 로고    scopus 로고
    • Linking environmental carcinogen exposure to TP53 mutations in human tumours using the human TP53 knock-in (Hupki) mouse model
    • 10.1111/j.1742-4658.2010.07676.x 20553493
    • Linking environmental carcinogen exposure to TP53 mutations in human tumours using the human TP53 knock-in (Hupki) mouse model. Kucab JE, Phillips DH, Arlt VM, FEBS J 2010 277 2567 2583 10.1111/j.1742-4658.2010.07676.x 20553493
    • (2010) FEBS J , vol.277 , pp. 2567-2583
    • Kucab, J.E.1    Phillips, D.H.2    Arlt, V.M.3
  • 29
    • 22144460207 scopus 로고    scopus 로고
    • Cellular UV damage responses - Functions of tumor suppressor p53
    • DOI 10.1016/j.bbcan.2005.04.003, PII S0304419X05000107
    • Cellular UV damage responses-functions of tumor suppressor p53. Latonen L, Laiho M, Biochim Biophys Acta 2005 1755 71 89 15921859 (Pubitemid 40982559)
    • (2005) Biochimica et Biophysica Acta - Reviews on Cancer , vol.1755 , Issue.2 , pp. 71-89
    • Latonen, L.1    Laiho, M.2
  • 30
    • 33847381413 scopus 로고    scopus 로고
    • The Sunny Side of p53
    • DOI 10.1016/j.cell.2007.02.027, PII S0092867407002516
    • The sunny side of p53. Oren M, Bartek J, Cell 2007 128 826 828 10.1016/j.cell.2007.02.027 17350568 (Pubitemid 46341426)
    • (2007) Cell , vol.128 , Issue.5 , pp. 826-828
    • Oren, M.1    Bartek, J.2
  • 31
    • 0030891924 scopus 로고    scopus 로고
    • Enhanced expression of the Kin17 protein immediately after low doses of ionizing radiation
    • DOI 10.2307/3579501
    • Enhanced expression of the Kin17 protein immediately after low doses of ionizing radiation. Biard DS, Saintigny Y, Maratrat M, Paris F, Martin M, Angulo JF, Radiat Res 1997 147 442 450 10.2307/3579501 9092924 (Pubitemid 27150375)
    • (1997) Radiation Research , vol.147 , Issue.4 , pp. 442-450
    • Biard, D.S.F.1    Saintigny, Y.2    Maratrat, M.3    Paris, F.4    Martin, M.5    Angulo, J.F.6
  • 32
    • 0033863436 scopus 로고    scopus 로고
    • Molecular cloning and characterization of the human KIN17 cDNA encoding a component of the UVC response that is conserved among metazoans
    • 10.1093/carcin/21.9.1701 10964102
    • Molecular cloning and characterization of the human KIN17 cDNA encoding a component of the UVC response that is conserved among metazoans. Kannouche P, Mauffrey P, Pinon-Lataillade G, Mattei MG, Sarasin A, Daya-Grosjean L, Angulo JF, Carcinogenesis 2000 21 1701 1710 10.1093/carcin/21.9.1701 10964102
    • (2000) Carcinogenesis , vol.21 , pp. 1701-1710
    • Kannouche, P.1    Mauffrey, P.2    Pinon-Lataillade, G.3    Mattei, M.G.4    Sarasin, A.5    Daya-Grosjean, L.6    Angulo, J.F.7
  • 33
    • 0037166249 scopus 로고    scopus 로고
    • Ionizing radiation triggers chromatin-bound kin17 complex formation in human cells
    • DOI 10.1074/jbc.M200321200
    • Ionizing radiation triggers chromatin-bound kin17 complex formation in human cells. Biard DS, Miccoli L, Despras E, Frobert Y, Creminon C, Angulo JF, J Biol Chem 2002 277 19156 19165 10.1074/jbc.M200321200 11880372 (Pubitemid 34952482)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.21 , pp. 19156-19165
    • Biard, D.S.F.1    Miccoli, L.2    Despras, E.3    Frobert, Y.4    Creminon, C.5    Angulo, J.F.6
  • 36
    • 44949231424 scopus 로고    scopus 로고
    • T method
    • DOI 10.1038/nprot.2008.73, PII NPROT.2008.73
    • Analyzing real-time PCR data by the comparative CT method. Schmittgen TD, Livak KJ, Nat Protoc 2008 3 1101 1108 10.1038/nprot.2008.73 18546601 (Pubitemid 351818697)
    • (2008) Nature Protocols , vol.3 , Issue.6 , pp. 1101-1108
    • Schmittgen, T.D.1    Livak, K.J.2
  • 37
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
    • DOI 10.1023/B:BILE.0000019559.84305.47
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations. Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP, Biotechnol Lett 2004 26 509 515 15127793 (Pubitemid 38448421)
    • (2004) Biotechnology Letters , vol.26 , Issue.6 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3    Neuvians, T.P.4
  • 38
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • DOI 10.1158/0008-5472.CAN-04-0496
    • Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Andersen CL, Jensen JL, Orntoft TF, Cancer Res 2004 64 5245 5250 10.1158/0008-5472.CAN-04- 0496 15289330 (Pubitemid 39006544)
    • (2004) Cancer Research , vol.64 , Issue.15 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 39
    • 5344244656 scopus 로고    scopus 로고
    • Vienna, Austria: R Foundation for Statistical Computing 3-900051-07-0 URL Development Core Team R.
    • R Development Core Team, R: A language and environment for statistical computing Vienna, Austria: R Foundation for Statistical Computing 3-900051-07-0 2008 URL http://www.R-project.org
    • (2008) R: A Language and Environment for Statistical Computing
  • 43
    • 0033724701 scopus 로고    scopus 로고
    • Chaperones in cell cycle regulation and mitogenic signal transduction: A review
    • 10.1046/j.1365-2184.2000.00189.x 11101008
    • Chaperones in cell cycle regulation and mitogenic signal transduction: a review. Helmbrecht K, Zeise E, Rensing L, Cell Prolif 2000 33 341 365 10.1046/j.1365-2184.2000.00189.x 11101008
    • (2000) Cell Prolif , vol.33 , pp. 341-365
    • Helmbrecht, K.1    Zeise, E.2    Rensing, L.3
  • 44
    • 0035801391 scopus 로고    scopus 로고
    • Hsp70 interactions with the p53 tumour suppressor protein
    • DOI 10.1093/emboj/20.17.4634
    • Hsp70 interactions with the p53 tumour suppressor protein. Zylicz M, King FW, Wawrzynow A, EMBO J 2001 20 4634 463 10.1093/emboj/20.17.4634 11532927 (Pubitemid 32848616)
    • (2001) EMBO Journal , vol.20 , Issue.17 , pp. 4634-4638
    • Zylicz, M.1    King, F.W.2    Wawrzynow, A.3
  • 46
    • 80051709190 scopus 로고    scopus 로고
    • Inflammation and p53: A Tale of Two Stresses
    • 10.1177/1947601911409747 21779518
    • Inflammation and p53: A Tale of Two Stresses. Gudkov AV, Gurova KV, Komarova EA, Genes Cancer 2011 2 4 503 16 10.1177/1947601911409747 21779518
    • (2011) Genes Cancer , vol.2 , Issue.4 , pp. 503-516
    • Gudkov, A.V.1    Gurova, K.V.2    Komarova, E.A.3
  • 47
    • 64049091512 scopus 로고    scopus 로고
    • Hsp70 and cardiac surgery: Molecular chaperone and inflammatory regulator with compartmentalized effects
    • 10.1007/s12192-008-0066-9
    • Hsp70 and cardiac surgery: molecular chaperone and inflammatory regulator with compartmentalized effects. De Jong PR, Schadenberg AW, Jansen NJ, Prakken BJ, Cell Stress Chaperon 2009 14 2 117 31 10.1007/s12192-008-0066-9
    • (2009) Cell Stress Chaperon , vol.14 , Issue.2 , pp. 117-131
    • De Jong, P.R.1    Schadenberg, A.W.2    Jansen, N.J.3    Prakken, B.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.