메뉴 건너뛰기




Volumn 29, Issue 13, 2013, Pages

A context-sensitive framework for the analysis of human signalling pathways in molecular interaction networks

Author keywords

[No Author keywords available]

Indexed keywords

PB2 PROTEIN, INFLUENZA VIRUS; VIRUS PROTEIN;

EID: 84879955888     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt240     Document Type: Conference Paper
Times cited : (7)

References (33)
  • 1
    • 75549087047 scopus 로고    scopus 로고
    • The intact molecular interaction database in 2010
    • Aranda, B. et al. (2010) The intact molecular interaction database in 2010. Nucleic Acids Res., 38, D525-D531.
    • (2010) Nucleic Acids Res. , vol.38
    • Aranda, B.1
  • 2
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology
    • Ashburner, M. et al. (2000) Gene ontology: Tool for the unification of biology. Nat. Genet., 25, 25.
    • (2000) Nat. Genet. , vol.25 , pp. 25
    • Ashburner, M.1
  • 3
    • 55449101983 scopus 로고    scopus 로고
    • Organization of physical interactomes as uncovered by network schemas
    • Banks, E. et al. (2008) Organization of physical interactomes as uncovered by network schemas. PLoS Comput. Biol., 4, e1000203.
    • (2008) PLoS Comput. Biol. , vol.4
    • Banks, E.1
  • 4
    • 78650373804 scopus 로고    scopus 로고
    • Network medicine: A network-based approach to human disease
    • Barabasi, A.L. et al. (2011) Network medicine: A network-based approach to human disease. Nat. Rev. Genet., 12, 56-68.
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 56-68
    • Barabasi, A.L.1
  • 5
    • 20144372620 scopus 로고    scopus 로고
    • High-throughput mapping of a dynamic signaling network in mammalian cells
    • Barrios-Rodiles, M. et al. (2005) High-throughput mapping of a dynamic signaling network in mammalian cells. Science, 307, 1621-1625.
    • (2005) Science , vol.307 , pp. 1621-1625
    • Barrios-Rodiles, M.1
  • 6
    • 84876569934 scopus 로고    scopus 로고
    • The tissuenet database of human tissue protein-protein interactions
    • Barshir, R. et al. (2013) The tissuenet database of human tissue protein-protein interactions. Nucleic Acids Res., 41, D841-D844.
    • (2013) Nucleic Acids Res. , vol.41
    • Barshir, R.1
  • 7
    • 36849004088 scopus 로고    scopus 로고
    • Pathfinder: Nining signal transduction pathway segments from protein-protein interaction networks
    • Bebek, G. and Yang, J. (2007) Pathfinder: Nining signal transduction pathway segments from protein-protein interaction networks. BMC Bioinformatics, 8, 335.
    • (2007) BMC Bioinformatics , vol.8 , pp. 335
    • Bebek, G.1    Yang, J.2
  • 8
    • 79960245388 scopus 로고    scopus 로고
    • Selected reaction monitoring mass spectrometry reveals the dynamics of signaling through the grb2 adaptor
    • Bisson, N. et al. (2011) Selected reaction monitoring mass spectrometry reveals the dynamics of signaling through the grb2 adaptor. Nat. Biotechnol., 29, 653-658.
    • (2011) Nat. Biotechnol. , vol.29 , pp. 653-658
    • Bisson, N.1
  • 9
    • 35748980569 scopus 로고    scopus 로고
    • Mining biological networks for unknown pathways
    • Cakmak, A. and Ozsoyoglu, G. (2007) Mining biological networks for unknown pathways. Bioinformatics, 23, 2775-2783.
    • (2007) Bioinformatics , vol.23 , pp. 2775-2783
    • Cakmak, A.1    Ozsoyoglu, G.2
  • 10
    • 75549083295 scopus 로고    scopus 로고
    • Mint, the molecular interaction database: 2009 update
    • Ceol, A. et al. (2010) Mint, the molecular interaction database: 2009 update. Nucleic Acids Res., 38, D532-D539.
    • (2010) Nucleic Acids Res. , vol.38
    • Ceol, A.1
  • 11
    • 13244284551 scopus 로고    scopus 로고
    • Dynamic complex formation during the yeast cell cycle
    • de Lichtenberg, U. et al. (2005) Dynamic complex formation during the yeast cell cycle. Science, 307, 724-727.
    • (2005) Science , vol.307 , pp. 724-727
    • De Lichtenberg, U.1
  • 12
    • 77956634918 scopus 로고    scopus 로고
    • The pb2 subunit of the influenza virus RNA polymerase affects virulence by interacting with the mitochondrial antiviral signaling protein and inhibiting expression of beta interferon
    • Graef, K.M. et al. (2010) The pb2 subunit of the influenza virus RNA polymerase affects virulence by interacting with the mitochondrial antiviral signaling protein and inhibiting expression of beta interferon. J. Virol., 84, 8433-8445.
    • (2010) J. Virol. , vol.84 , pp. 8433-8445
    • Graef, K.M.1
  • 13
    • 84866931187 scopus 로고    scopus 로고
    • Tissue-specific functional networks for prioritizing phenotype and disease genes
    • Guan, Y. et al. (2012) Tissue-specific functional networks for prioritizing phenotype and disease genes. PLoS Comput. Biol., 8, e1002694.
    • (2012) PLoS Comput. Biol. , vol.8
    • Guan, Y.1
  • 14
    • 41649119247 scopus 로고    scopus 로고
    • Protein networks in disease
    • Ideker, T. and Sharan, R. (2008) Protein networks in disease. Genome Res., 18, 644-652.
    • (2008) Genome Res. , vol.18 , pp. 644-652
    • Ideker, T.1    Sharan, R.2
  • 15
    • 84866888440 scopus 로고    scopus 로고
    • Enhancing the prioritization of disease-causing genes through tissue specific protein interaction networks
    • Magger, O. et al. (2012) Enhancing the prioritization of disease-causing genes through tissue specific protein interaction networks. PLoS Comput. Biol., 8, e1002690.
    • (2012) PLoS Comput. Biol. , vol.8
    • Magger, O.1
  • 16
    • 33644876958 scopus 로고    scopus 로고
    • Transfac and its module transcompel: Transcriptional gene regulation in eukaryotes
    • Matys, V. et al. (2006) Transfac and its module transcompel: Transcriptional gene regulation in eukaryotes. Nucleic Acids Res., 34, D108-D110.
    • (2006) Nucleic Acids Res. , vol.34
    • Matys, V.1
  • 17
    • 33745113181 scopus 로고    scopus 로고
    • Discovery of biological networks from diverse functional genomic data
    • Myers, C.L. et al. (2005) Discovery of biological networks from diverse functional genomic data. Genome Biol., 6, R114.
    • (2005) Genome Biol. , vol.6
    • Myers, C.L.1
  • 18
    • 34547840240 scopus 로고    scopus 로고
    • Functional annotation of regulatory pathways
    • Pandey, J. et al. (2007) Functional annotation of regulatory pathways. Bioinformatics, 23, i377-i386.
    • (2007) Bioinformatics , vol.23
    • Pandey, J.1
  • 19
    • 78651290281 scopus 로고    scopus 로고
    • Spike: A database of highly curated human signaling pathways
    • Paz, A. et al. (2011) Spike: A database of highly curated human signaling pathways. Nucleic Acids Res., 39, D793-D799.
    • (2011) Nucleic Acids Res. , vol.39
    • Paz, A.1
  • 20
    • 68249087607 scopus 로고    scopus 로고
    • Semantic similarity in biomedical ontologies
    • Pesquita, C. et al. (2009) Semantic similarity in biomedical ontologies. PLoS Comput. Biol., 5, e1000443.
    • (2009) PLoS Comput. Biol. , vol.5
    • Pesquita, C.1
  • 21
    • 0347755535 scopus 로고    scopus 로고
    • The database of interacting proteins: 2004 update
    • Salwinski, L. et al. (2004) The database of interacting proteins: 2004 update. Nucleic Acids Res., 32, D449-D451.
    • (2004) Nucleic Acids Res. , vol.32
    • Salwinski, L.1
  • 22
    • 70249134919 scopus 로고    scopus 로고
    • Molecular networks as sensors and drivers of common human diseases
    • Schadt, E.E. (2009) Molecular networks as sensors and drivers of common human diseases. Nature, 461, 218-223.
    • (2009) Nature , vol.461 , pp. 218-223
    • Schadt, E.E.1
  • 23
    • 84873512768 scopus 로고    scopus 로고
    • Adding protein context to the human protein-protein interaction network to reveal meaningful interactions
    • Schaefer, M.H. (2012) Adding protein context to the human protein-protein interaction network to reveal meaningful interactions. PLoS Comput. Biol., 9, e1002860.
    • (2012) PLoS Comput. Biol. , vol.9
    • Schaefer, M.H.1
  • 24
    • 33645983211 scopus 로고    scopus 로고
    • Efficient algorithms for detecting signaling pathways in protein interaction networks
    • Scott, J. et al. (2006) Efficient algorithms for detecting signaling pathways in protein interaction networks. J. Comput. Biol., 13, 133-144.
    • (2006) J. Comput. Biol. , vol.13 , pp. 133-144
    • Scott, J.1
  • 25
    • 72249103485 scopus 로고    scopus 로고
    • A physical and regulatory map of host-influenza interactions reveals pathways in h1n1 infection
    • Shapira, S.D. et al. (2009) A physical and regulatory map of host-influenza interactions reveals pathways in h1n1 infection. Cell, 139, 1255-1267.
    • (2009) Cell , vol.139 , pp. 1255-1267
    • Shapira, S.D.1
  • 26
    • 78651328883 scopus 로고    scopus 로고
    • The biogrid interaction database: 2011 update
    • Stark, C. et al. (2011) The biogrid interaction database: 2011 update. Nucleic Acids Res., 39, D698-D704.
    • (2011) Nucleic Acids Res. , vol.39
    • Stark, C.1
  • 27
    • 0003009091 scopus 로고    scopus 로고
    • Automated modelling of signal transduction networks
    • Steffen, M. et al. (2002) Automated modelling of signal transduction networks. BMC Bioinformatics, 3, 34.
    • (2002) BMC Bioinformatics , vol.3 , pp. 34
    • Steffen, M.1
  • 28
    • 42949096140 scopus 로고    scopus 로고
    • Eqed: An efficient method for interpreting eqtl associations using protein networks
    • Suthram, S. et al. (2008) eqed: An efficient method for interpreting eqtl associations using protein networks. Mol. Syst. Biol., 4, 162.
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 162
    • Suthram, S.1
  • 29
    • 78651324347 scopus 로고    scopus 로고
    • The string database in 2011: Functional interaction networks of proteins, globally integrated and scored
    • Szklarczyk, D. et al. (2011) The string database in 2011: Functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res., 39, D561-D568.
    • (2011) Nucleic Acids Res. , vol.39
    • Szklarczyk, D.1
  • 30
    • 84864470208 scopus 로고    scopus 로고
    • Steinernet: A web server for integrating 'omic' data to discover hidden components of response pathways
    • Tuncbag, N. et al. (2012) Steinernet: A web server for integrating 'omic' data to discover hidden components of response pathways. Nucleic Acids Res., 40, W505-W509.
    • (2012) Nucleic Acids Res. , vol.40
    • Tuncbag, N.1
  • 31
    • 3142550630 scopus 로고    scopus 로고
    • Physical network models
    • Yeang, C.H. et al. (2004) Physical network models. J. Comput. Biol., 11, 243-262.
    • (2004) J. Comput. Biol. , vol.11 , pp. 243-262
    • Yeang, C.H.1
  • 32
    • 61349114190 scopus 로고    scopus 로고
    • Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity
    • Yeger-Lotem, E. et al. (2009) Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity. Nat. Genet., 41, 316-323.
    • (2009) Nat. Genet. , vol.41 , pp. 316-323
    • Yeger-Lotem, E.1
  • 33
    • 62549145762 scopus 로고    scopus 로고
    • Toward accurate reconstruction of functional protein networks
    • Yosef, N. et al. (2009) Toward accurate reconstruction of functional protein networks. Mol. Syst. Biol., 5, 248. Negev
    • (2009) Mol. Syst. Biol. , vol.5 , pp. 248
    • Yosef, N.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.