Activation of nucleotide-binding oligomerization domain 1 (NOD1) receptor signaling in labeo rohita by ie-dap and identification of ligand-binding key motifs in nod1 by molecular modeling and docking

Applied Biochemistry and Biotechnology

Volumn 170, Issue 6, 2013, Pages 1282-1309

  Sahoo, Bikash Ranjan ^a   Swain, Banikalyan ^a   Dikhit, Manas Ranjan ^b   Basu, Madhubanti ^a   Bej, Aritra ^a   Jayasankar, Pallipuram ^a   Samanta, Mrinal ^a  

^a CENTRAL INSTITUTE OF FRESHWATER AQUACULTURE   (India)

^b RAJENDRA MEMORIAL RESEARCH INSTITUTE OF MEDICAL SCIENCES   (India)

Author keywords

3D modeling; Innate immunity; Molecular dynamics simulation; NOD

Indexed keywords

3-D MODELING; AMINO ACID RESIDUES; INNATE IMMUNITY; LEUCINE-RICH REPEATS; LIPOPOLYSACCHARIDES; MOLECULAR DYNAMICS SIMULATIONS; NOD; QUANTITATIVE REAL-TIME POLYMERASE CHAIN REACTION;

ACTIVATION ANALYSIS; AMINO ACIDS; C (PROGRAMMING LANGUAGE); IMMUNE SYSTEM; LIGANDS; MOLECULAR DYNAMICS; MOLECULAR MODELING; NUCLEOTIDES; OLIGOMERIZATION; OLIGOMERS; POLYMERASE CHAIN REACTION; SIGNALING;

THREE DIMENSIONAL;

BETA ACTIN; LIPOPOLYSACCHARIDE; NUCLEOTIDE BINDING OLIGOMERIZATION DOMAIN 1 RECEPTOR; PATTERN RECOGNITION RECEPTOR; POLYINOSINIC POLYCYTIDYLIC ACID; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ANIMAL EXPERIMENT; ARTICLE; CONTROLLED STUDY; HYDROGEN BOND; LABEO ROHITA; LIGAND BINDING; MOLECULAR DOCKING; MOLECULAR DYNAMICS; MOLECULAR MODEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYSICAL CHEMISTRY; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN MOTIF; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; REAL TIME POLYMERASE CHAIN REACTION; RNA ISOLATION; SEQUENCE ALIGNMENT; SITE DIRECTED MUTAGENESIS; UPREGULATION;

AMINO ACID MOTIFS; ANIMALS; BINDING SITES; COMPUTER SIMULATION; CYPRINIFORMES; DIAMINOPIMELIC ACID; LIGANDS; MODELS, BIOLOGICAL; MODELS, CHEMICAL; MODELS, MOLECULAR; NOD SIGNALING ADAPTOR PROTEINS; PROTEIN BINDING; SIGNAL TRANSDUCTION;

LABEO ROHITA;

EID: 84879884187     PISSN: 02732289     EISSN: 15590291     Source Type: Journal    
DOI: 10.1007/s12010-013-0263-6     Document Type: Article

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