메뉴 건너뛰기




Volumn 105, Issue 1, 2013, Pages 194-199

Elucidating internucleosome interactions and the roles of histone tails

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE; MAGNESIUM CHLORIDE; POTASSIUM CHLORIDE;

EID: 84879822084     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2013.05.021     Document Type: Article
Times cited : (13)

References (33)
  • 1
    • 0036089388 scopus 로고    scopus 로고
    • Conformational dynamics of the chromatin fiber in solution: Determinants, mechanisms, and functions
    • J.C. Hansen Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions Annu. Rev. Biophys. Biomol. Struct. 31 2002 361 392
    • (2002) Annu. Rev. Biophys. Biomol. Struct. , vol.31 , pp. 361-392
    • Hansen, J.C.1
  • 2
    • 0025327471 scopus 로고
    • Electrostatic mechanism of chromatin folding
    • D.J. Clark, and T. Kimura Electrostatic mechanism of chromatin folding J. Mol. Biol. 211 1990 883 896
    • (1990) J. Mol. Biol. , vol.211 , pp. 883-896
    • Clark, D.J.1    Kimura, T.2
  • 3
    • 77957364476 scopus 로고    scopus 로고
    • Electrostatic origin of salt-induced nucleosome array compaction
    • N. Korolev, and A. Allahverdi L. Nordenskiöld Electrostatic origin of salt-induced nucleosome array compaction Biophys. J. 99 2010 1896 1905
    • (2010) Biophys. J. , vol.99 , pp. 1896-1905
    • Korolev, N.1    Allahverdi, A.2    Nordenskiöld, L.3
  • 4
    • 0034901554 scopus 로고    scopus 로고
    • Aggregation of nucleosomes by divalent cations
    • M. de Frutos, and E. Raspaud F. Livolant Aggregation of nucleosomes by divalent cations Biophys. J. 81 2001 1127 1132
    • (2001) Biophys. J. , vol.81 , pp. 1127-1132
    • De Frutos, M.1    Raspaud, E.2    Livolant, F.3
  • 5
    • 20444377701 scopus 로고    scopus 로고
    • Electrostatic mechanism of nucleosomal array folding revealed by computer simulation
    • J. Sun, Q. Zhang, and T. Schlick Electrostatic mechanism of nucleosomal array folding revealed by computer simulation Proc. Natl. Acad. Sci. USA 102 2005 8180 8185
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 8180-8185
    • Sun, J.1    Zhang, Q.2    Schlick, T.3
  • 6
    • 0031831516 scopus 로고    scopus 로고
    • Structure, dynamics, and function of chromatin in vitro
    • J. Widom Structure, dynamics, and function of chromatin in vitro Annu. Rev. Biophys. Biomol. Struct. 27 1998 285 327
    • (1998) Annu. Rev. Biophys. Biomol. Struct. , vol.27 , pp. 285-327
    • Widom, J.1
  • 7
    • 0037436410 scopus 로고    scopus 로고
    • Chromatin fiber folding: Requirement for the histone H4 N-terminal tail
    • B. Dorigo, and T. Schalch T.J. Richmond Chromatin fiber folding: requirement for the histone H4 N-terminal tail J. Mol. Biol. 327 2003 85 96
    • (2003) J. Mol. Biol. , vol.327 , pp. 85-96
    • Dorigo, B.1    Schalch, T.2    Richmond, T.J.3
  • 8
    • 26644471508 scopus 로고    scopus 로고
    • The core histone N-terminal tail domains function independently and additively during salt-dependent oligomerization of nucleosomal arrays
    • F. Gordon, K. Luger, and J.C. Hansen The core histone N-terminal tail domains function independently and additively during salt-dependent oligomerization of nucleosomal arrays J. Biol. Chem. 280 2005 33701 33706
    • (2005) J. Biol. Chem. , vol.280 , pp. 33701-33706
    • Gordon, F.1    Luger, K.2    Hansen, J.C.3
  • 9
    • 79953148278 scopus 로고    scopus 로고
    • The effects of histone H4 tail acetylations on cation-induced chromatin folding and self-association
    • A. Allahverdi, and R. Yang L. Nordenskiöld The effects of histone H4 tail acetylations on cation-induced chromatin folding and self-association Nucleic Acids Res. 39 2011 1680 1691
    • (2011) Nucleic Acids Res. , vol.39 , pp. 1680-1691
    • Allahverdi, A.1    Yang, R.2    Nordenskiöld, L.3
  • 10
    • 84857340459 scopus 로고    scopus 로고
    • Toward convergence of experimental studies and theoretical modeling of the chromatin fiber
    • T. Schlick, J. Hayes, and S. Grigoryev Toward convergence of experimental studies and theoretical modeling of the chromatin fiber J. Biol. Chem. 287 2012 5183 5191
    • (2012) J. Biol. Chem. , vol.287 , pp. 5183-5191
    • Schlick, T.1    Hayes, J.2    Grigoryev, S.3
  • 11
    • 84861782030 scopus 로고    scopus 로고
    • Modelling chromatin structure and dynamics: Status and prospects
    • N. Korolev, and Y. Fan L. Nordenskiöld Modelling chromatin structure and dynamics: status and prospects Curr. Opin. Struct. Biol. 22 2012 151 159
    • (2012) Curr. Opin. Struct. Biol. , vol.22 , pp. 151-159
    • Korolev, N.1    Fan, Y.2    Nordenskiöld, L.3
  • 12
    • 0037992395 scopus 로고    scopus 로고
    • The structure of DNA in the nucleosome core
    • T.J. Richmond, and C.A. Davey The structure of DNA in the nucleosome core Nature 423 2003 145 150
    • (2003) Nature , vol.423 , pp. 145-150
    • Richmond, T.J.1    Davey, C.A.2
  • 13
    • 78049347710 scopus 로고    scopus 로고
    • Chromatin ionic atmosphere analyzed by a mesoscale electrostatic approach
    • H.H. Gan, and T. Schlick Chromatin ionic atmosphere analyzed by a mesoscale electrostatic approach Biophys. J. 99 2010 2587 2596
    • (2010) Biophys. J. , vol.99 , pp. 2587-2596
    • Gan, H.H.1    Schlick, T.2
  • 14
    • 70350065991 scopus 로고    scopus 로고
    • Counterion atmosphere and hydration patterns near a nucleosome core particle
    • C.K. Materese, A. Savelyev, and G.A. Papoian Counterion atmosphere and hydration patterns near a nucleosome core particle J. Am. Chem. Soc. 131 2009 15005 15013
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 15005-15013
    • Materese, C.K.1    Savelyev, A.2    Papoian, G.A.3
  • 15
    • 79955923819 scopus 로고    scopus 로고
    • Energy landscape analyses of disordered histone tails reveal special organization of their conformational dynamics
    • D.A. Potoyan, and G.A. Papoian Energy landscape analyses of disordered histone tails reveal special organization of their conformational dynamics J. Am. Chem. Soc. 133 2011 7405 7415
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 7405-7415
    • Potoyan, D.A.1    Papoian, G.A.2
  • 16
    • 65649099698 scopus 로고    scopus 로고
    • A tale of tails: How histone tails mediate chromatin compaction in different salt and linker histone environments
    • G. Arya, and T. Schlick A tale of tails: how histone tails mediate chromatin compaction in different salt and linker histone environments J. Phys. Chem. A 113 2009 4045 4059
    • (2009) J. Phys. Chem. A , vol.113 , pp. 4045-4059
    • Arya, G.1    Schlick, T.2
  • 18
    • 70449086211 scopus 로고    scopus 로고
    • Depletion effects massively change chromatin properties and influence genome folding
    • P.M. Diesinger, and D.W. Heermann Depletion effects massively change chromatin properties and influence genome folding Biophys. J. 97 2009 2146 2153
    • (2009) Biophys. J. , vol.97 , pp. 2146-2153
    • Diesinger, P.M.1    Heermann, D.W.2
  • 19
    • 0242677113 scopus 로고    scopus 로고
    • Chromatin dynamics: Nucleosomes go mobile through twist defects
    • I.M. Kulić, and H. Schiessel Chromatin dynamics: nucleosomes go mobile through twist defects Phys. Rev. Lett. 91 2003 148103
    • (2003) Phys. Rev. Lett. , vol.91 , pp. 148103
    • Kulić, I.M.1    Schiessel, H.2
  • 20
    • 0017619403 scopus 로고
    • Small angle neutron scattering studies of chromatin subunits in solution
    • R.P. Hjelm, and G.G. Kneale K. Ibel Small angle neutron scattering studies of chromatin subunits in solution Cell 10 1977 139 151
    • (1977) Cell , vol.10 , pp. 139-151
    • Hjelm, R.P.1    Kneale, G.G.2    Ibel, K.3
  • 21
    • 85055691741 scopus 로고
    • Small-angle neutron-scattering investigation of correlations in charged macromolecular and supramolecular solutions
    • S.H. Chen, and E.Y. Sheu H. Hoffmann Small-angle neutron-scattering investigation of correlations in charged macromolecular and supramolecular solutions J. Appl. Cryst. 21 1988 751 769
    • (1988) J. Appl. Cryst. , vol.21 , pp. 751-769
    • Chen, S.H.1    Sheu, E.Y.2    Hoffmann, H.3
  • 22
    • 34047232501 scopus 로고    scopus 로고
    • H3 and H4 histone tails play a central role in the interactions of recombinant NCPs
    • A. Bertin, and M. Renouard D. Durand H3 and H4 histone tails play a central role in the interactions of recombinant NCPs Biophys. J. 92 2007 2633 2645
    • (2007) Biophys. J. , vol.92 , pp. 2633-2645
    • Bertin, A.1    Renouard, M.2    Durand, D.3
  • 23
    • 0021352605 scopus 로고
    • Dynamics and equilibria of nucleosomes at elevated ionic strength
    • T.D. Yager, and K.E. van Holde Dynamics and equilibria of nucleosomes at elevated ionic strength J. Biol. Chem. 259 1984 4212 4222
    • (1984) J. Biol. Chem. , vol.259 , pp. 4212-4222
    • Yager, T.D.1    Van Holde, K.E.2
  • 24
    • 79958712678 scopus 로고    scopus 로고
    • Biophysical analysis and small-angle X-ray scattering-derived structures of MeCP2-nucleosome complexes
    • C. Yang, and M.J. van der Woerd K. Luger Biophysical analysis and small-angle X-ray scattering-derived structures of MeCP2-nucleosome complexes Nucleic Acids Res. 39 2011 4122 4135
    • (2011) Nucleic Acids Res. , vol.39 , pp. 4122-4135
    • Yang, C.1    Van Der Woerd, M.J.2    Luger, K.3
  • 25
    • 0036221883 scopus 로고    scopus 로고
    • Salt-induced conformation and interaction changes of nucleosome core particles
    • S. Mangenot, and A. Leforestier F. Livolant Salt-induced conformation and interaction changes of nucleosome core particles Biophys. J. 82 2002 345 356
    • (2002) Biophys. J. , vol.82 , pp. 345-356
    • Mangenot, S.1    Leforestier, A.2    Livolant, F.3
  • 26
    • 27144472219 scopus 로고    scopus 로고
    • Effective long-range attraction between protein molecules in solutions studied by small angle neutron scattering
    • Y. Liu, and E. Fratini S.-H. Chen Effective long-range attraction between protein molecules in solutions studied by small angle neutron scattering Phys. Rev. Lett. 95 2005 118102
    • (2005) Phys. Rev. Lett. , vol.95 , pp. 118102
    • Liu, Y.1    Fratini, E.2    Chen, S.-H.3
  • 27
    • 33645518284 scopus 로고    scopus 로고
    • Measuring inter-DNA potentials in solution
    • X. Qiu, and L.W. Kwok L. Pollack Measuring inter-DNA potentials in solution Phys. Rev. Lett. 96 2006 138101
    • (2006) Phys. Rev. Lett. , vol.96 , pp. 138101
    • Qiu, X.1    Kwok, L.W.2    Pollack, L.3
  • 28
    • 0038004178 scopus 로고    scopus 로고
    • Alexander's prescription for colloidal charge renormalization
    • E. Trizac, and L. Bocquet H.H. von Grunberg Alexander's prescription for colloidal charge renormalization Langmuir 19 2003 4027 4033
    • (2003) Langmuir , vol.19 , pp. 4027-4033
    • Trizac, E.1    Bocquet, L.2    Von Grunberg, H.H.3
  • 29
    • 0036525256 scopus 로고    scopus 로고
    • Interactions between isolated nucleosome core particles: A tail-bridging effect?
    • S. Mangenot, and E. Raspaud F. Livolant Interactions between isolated nucleosome core particles: a tail-bridging effect? Eur. Phys. J. E 7 2002 221 231
    • (2002) Eur. Phys. J. e , vol.7 , pp. 221-231
    • Mangenot, S.1    Raspaud, E.2    Livolant, F.3
  • 30
    • 33750807408 scopus 로고    scopus 로고
    • Role of histone tails in chromatin folding revealed by a mesoscopic oligonucleosome model
    • G. Arya, and T. Schlick Role of histone tails in chromatin folding revealed by a mesoscopic oligonucleosome model Proc. Natl. Acad. Sci. USA 103 2006 16236 16241
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 16236-16241
    • Arya, G.1    Schlick, T.2
  • 31
    • 34547780762 scopus 로고    scopus 로고
    • H4 histone tail mediated DNA-DNA interaction and effects on DNA structure, flexibility, and counterion binding: A molecular dynamics study
    • N. Korolev, and L. Nordenskiöld H4 histone tail mediated DNA-DNA interaction and effects on DNA structure, flexibility, and counterion binding: a molecular dynamics study Biopolymers 86 2007 409 423
    • (2007) Biopolymers , vol.86 , pp. 409-423
    • Korolev, N.1    Nordenskiöld, L.2
  • 32
    • 9444297879 scopus 로고    scopus 로고
    • Nucleosome arrays reveal the two-start organization of the chromatin fiber
    • B. Dorigo, and T. Schalch T.J. Richmond Nucleosome arrays reveal the two-start organization of the chromatin fiber Science 306 2004 1571 1573
    • (2004) Science , vol.306 , pp. 1571-1573
    • Dorigo, B.1    Schalch, T.2    Richmond, T.J.3
  • 33
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 A resolution
    • K. Luger, and A.W. Mäder T.J. Richmond Crystal structure of the nucleosome core particle at 2.8 A resolution Nature 389 1997 251 260
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mäder, A.W.2    Richmond, T.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.