Tail-induced attraction between nucleosome core particles

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 74, Issue 3, 2006, Pages

  Muhlbacher F ^a   Schiessel, H ^b   Holm, C ^a,c  

^a MAX PLANCK INSTITUTE FOR POLYMER RESEARCH   (Germany)

^b UNIVERSITEIT LEIDEN   (Netherlands)

^c GOETHE UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ACETYLATION; BIOCHEMISTRY; CHARGED PARTICLES; COLLOIDS; COMPLEXATION; DNA; HORMONES; NUCLEIC ACIDS;

CHROMATIN COMPLEX; EIGHT-TAIL COLLOIDS; PHYSICAL MECHANISM; TAIL-BRIDGING EFFECT;

ELECTROSTATIC DEVICES;

DNA;

ANIMAL; ARTICLE; BINDING SITE; BIOLOGICAL MODEL; CELL NUCLEUS; CHEMISTRY; CHROMATIN; CONFORMATION; ELECTRICITY; HUMAN; NUCLEOSOME;

ANIMALS; BINDING SITES; CELL NUCLEUS; CHROMATIN; DNA; ELECTROSTATICS; HUMANS; MODELS, BIOLOGICAL; NUCLEIC ACID CONFORMATION; NUCLEOSOMES;

EID: 33749330784     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.74.031919     Document Type: Article

References (35)

1. H. Schiessel, J. Phys.: Condens. Matter JCOMEL 0953-8984 10.1088/0953-8984/15/19/203 15, R699 (2003).
2. K. Luger, A. W. Mader, R. K. Richmond, D. F. Sargent, and T. J. Richmond, Nature (London) NATUAS 0028-0836 10.1038/38444 389, 251 (1997).
3. P. J. Horn and C. L. Peterson, Science SCIEAS 0036-8075 10.1126/science.1074200 297, 1824 (2002).
4. K. J. Polach and J. Widom, J. Mol. Biol. JMOBAK 0022-2836 10.1006/jmbi.1995.0606 254, 130 (1995).
5. I. M. Kulic and H. Schiessel, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.92.228101 92, 228101 (2004).
6. G. Li, M. Levitus, C. Bustamante, and J. Widom, Nat. Struct. Mol. Biol. NSMBCU 1545-9993 12, 46 (2005).
7. M. Tomschik, H. Zheng, K. van Holde, J. Zlatanova, and S. H. Leuba, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 102, 3278 (2005).
8. J. M. Gottesfeld, J. M. Belitsky, C. Melander, P. B. Dervan, and K. Luger, J. Mol. Biol. JMOBAK 0022-2836 10.1016/S0022-2836(02)00598-3 321, 249 (2002).
9. I. M. Kulic and H. Schiessel, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.91.148103 91, 148103 (2003).
10. F. Mohammad-Rafiee, I. M. Kulic, and H. Schiessel, J. Mol. Biol. JMOBAK 0022-2836 10.1016/j.jmb.2004.09.027 344, 47 (2004).
11. P. B. Becker, EMBO J. EMJODG 0261-4189 10.1093/emboj/cdf486 21, 4749 (2002).
12. F. Mühlbacher, C. Holm, and H. Schiessel, Europhys. Lett. EULEEJ 0295-5075 73, 135 (2006).
13. S. Mangenot, A. Leforestier, P. Vachette, D. Durand, and F. Livolant, Biophys. J. BIOJAU 0006-3495 82, 345 (2002).
14. S. Mangenot, E. Raspaud, C. Tribet, L. Belloni, and F. Livolant, Eur. Phys. J. E EPJSFH 1292-8941 10.1007/s10189-002-8234-x 7, 221 (2002).
15. A. Bertin, A. Leforestier, D. Durand, and F. Livolant, Biochemistry BICHAW 0006-2960 43, 4773 (2004).
16. K. Luger and T. J. Richmond, Curr. Opin. Genet. Dev. COGDET 0959-437X 8, 140 (1998).
17. H. Boroudjerdi and R. R. Netz, Europhys. Lett. EULEEJ 0295-5075 10.1209/epl/i2003-00218-2 64, 413 (2003).
18. H. Boroudjerdi and R. R. Netz, J. Phys.: Condens. Matter JCOMEL 0953-8984 10.1088/0953-8984/17/14/002 17, S1137 (2005).
19. I. Rouzina and V. A. Bloomfield, J. Phys. Chem. JPCHAX 0022-3654 10.1021/jp960458g 100, 9977 (1996).
20. E. Allahyarov, H. Löwen, J. P. Hansen, and A. A. Louis, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.67.051404 67, 051404 (2003).
21. R. Podgornik, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1570400 118, 11286 (2003).
22. T. Åkesson, C. Woodward, and B. Jönsson, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.457006 91, 2461 (1989).
23. S. J. Miklavic, C. E. Woodward, B. Jönsson, and T. Åkesson, Macromolecules MAMOBX 0024-9297 10.1021/ma00220a019 23, 4149 (1990).
24. M. K. Granfeldt, B. Jönsson, and C. E. Woodward, J. Phys. Chem. JPCHAX 0022-3654 10.1021/j100165a042 95, 4819 (1991).
25. R. Podgornik, T. Åkesson, and B. Jönsson, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.468810 102, 9423 (1995).
26. K. Kremer and G. S. Grest, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.458541 92, 5057 (1990).
27. D. A. McQuarrie, Statistical Mechanics (Harper-Collins, New York, 1976).
28. S. Alexander, P. M. Chaikin, P. Grant, G. J. Morales, P. Pincus, and D. Hone, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.446600 80, 5776 (1984).
29. D. Frenkel and B. Smit, Understanding Molecular Simulation, 2nd edition (Academic Press, San Diego, 2002).
30. H. Schiessel, Eur. Phys. J. E EPJSFH 1292-8941 19, 251 (2006).
31. J. Sun, Q. Zhang, and T. Schlick, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 10.1073/pnas.0408867102 102, 8180 (2005).
32. J. Zlatanova, S. H. Leuba, and K. van Holde, Biophys. J. BIOJAU 0006-3495 74, 2554 (1998).
33. H. Schiessel, Europhys. Lett. EULEEJ 0295-5075 10.1209/epl/i2002-00616-4 58, 140 (2002).
34. C. Tse, T. Sera, A. P. Wolffe, and J. C. Hansen, Mol. Cell. Biol. MCEBD4 0270-7306 18, 4629 (1998).
35. M. F. Dion, S. J. Altschuler, L. F. Wu, and O. J. Rando, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 102, 5501 (2005).