Novosphingobium aquaticum sp. nov., isolated from the humic-matter-rich bog lake Grosse Fuchskuhle

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART7, 2013, Pages 2630-2636

  Glaeser, Stefanie P ^a   Bolte, Kathrin ^b   Busse, Hans Jürgen ^c   Kämpfer, Peter ^a   Grossart, Hans Peter ^d   Glaeser, Jens ^a  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

^b PHILIPPS UNIVERSITY MARBURG   (Germany)

^c UNIVERSITY OF VETERINARY MEDICINE   (Austria)

^d LEIBNIZ INSTITUTE OF FRESHWATER ECOLOGY AND INLAND FISHERIES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; GLYCOSPHINGOLIPID; HYDROXY FATTY ACID; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; RNA 16S;

ARTICLE; CELL STRUCTURE; CONTROLLED STUDY; ENZYME ACTIVITY; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; LIPID COMPOSITION; NONHUMAN; NOVOSPHINGOBIUM AQUATICUM; NUCLEOTIDE SEQUENCE; PEATLAND; PHYLOGENETIC TREE; PRIORITY JOURNAL; TRANSMISSION ELECTRON MICROSCOPY;

BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; FATTY ACIDS; GERMANY; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPHINGOMONADACEAE; UBIQUINONE; WATER MICROBIOLOGY; WETLANDS;

NEGIBACTERIA; NOVOSPHINGOBIUM; NOVOSPHINGOBIUM ROSA;

EID: 84879810820     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.048280-0     Document Type: Article

References (36)

1. Addison, S. L., Foote, S. M., Reid, N. M. & Lloyd-Jones, G. (2007). Novosphingobium nitrogenifigens sp. nov., a polyhydroxyalkanoateaccumulating diazotroph isolated from a New Zealand pulp and paper wastewater. Int J Syst Evol Microbiol 57, 2467-2471.
2. Altenburger, P., Kämpfer, P., Makristathis, A., Lubitz, W. & Busse, H.-J. (1996). Classification of bacteria isolated from a medieval wall painting. J Biotechnol 47, 39-52.
3. Baek, S. H., Lim, J. H., Jin, L., Lee, H. G. & Lee, S. T. (2011). Novosphingobium sediminicola sp. nov. isolated from freshwater sediment. Int J Syst Evol Microbiol 61, 2464-2468.
4. Balkwill, D. L., Drake, G. R., Reeves, R. H., Fredrickson, J. K., White, D. C., Ringelberg, D. B., Chandler, D. P., Romine, M. F., Kennedy, D. W. & Spadoni, C. M. (1997). Taxonomic study of aromaticdegrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov. Int J Syst Bacteriol 47, 191-201.
5. Brosius, J., Palmer, M. L., Kennedy, P. J. & Noller, H. F. (1978). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A 75, 4801-4805.
6. Busse, H.-J. & Auling, G. (1988). Polyamine pattern as a chemotaxonomic marker within the Proteobacteria. Syst Appl Microbiol 11, 1-8.
7. Busse, H.-J., Kämpfer, P. & Denner, E. B. M. (1999). Chemotaxonomic characterisation of Sphingomonas. J Ind Microbiol Biotechnol 23, 242-251.
8. Button, D. K. (1993). Nutrient-limited microbial growth kinetics: overview and recent advances. Antonie van Leeuwenhoek 63, 225-235.
9. Felsenstein, J. (1985). Confidence limits of phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
10. Felsenstein, J. (2005). PHYLIP (phylogeny inference package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle.
11. Fujii, K., Satomi, M., Morita, N., Motomura, T., Tanaka, T. & Kikuchi, S. (2003). Novosphingobium tardaugens sp. nov., an oestradioldegrading bacterium isolated from activated sludge of a sewage treatment plant in Tokyo. Int J Syst Evol Microbiol 53, 47-52.
12. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
13. Glaeser, S. P., Kämpfer, P., Busse, H.-J., Langer, S. & Glaeser, J. (2009). Novosphingobium acidiphilum sp. nov., an acidophilic saltsensitive bacterium isolated from the humic acid-rich Lake Grosse Fuchskuhle. Int J Syst Evol Microbiol 59, 323-330.
14. Glaeser, S. P., Bolte, K., Martin, K., Busse, H.-J., Grossart, H.-P., Kämpfer, P. & Glaeser, J. (2012). Novosphingobium fuchskuhlense sp. nov. isolated from the north-east basin of Lake Grosse Fuchskuhle. Int J Syst Evol Microbiol 63, 586-592.
15. Gupta, S. K., Lal, D. & Lal, R. (2009). Novosphingobium panipatense sp. nov. and Novosphingobium mathurense sp. nov., from oil-contaminated soil. Int J Syst Evol Microbiol 59, 156-161.
16. Hasegawa, M., Kishino, H. & Yano, T. (1985). Dating of the humanape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22, 160-174.
17. Jukes, T. H. & Cantor, C. R. (1969). Evolution of the protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
18. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
19. Kämpfer, P., Steiof, M. & Dott, W. (1991). Microbiological characterization of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria. Microb Ecol 21, 227-251.
20. Kämpfer, P., Witzenberger, R., Denner, E. B. M., Busse, H.-J. & Neef, A. (2002). Novosphingobium hassiacum sp. nov., a new species isolated from an aerated sewage pond. Syst Appl Microbiol 25, 37-45.
21. Kämpfer, P., Young, C. C., Busse, H.-J., Lin, S. Y., Rekha, P. D., Arun, A. B., Chen, W. M., Shen, F. T. & Wu, Y. H. (2011). Novosphingobium soli sp. nov., isolated from soil. Int J Syst Evol Microbiol 61, 259-263.
22. Lim, Y. W., Moon, E. Y. & Chun, J. (2007). Reclassification of Flavobacterium resinovorum Delaporte and Daste 1956 as Novosphingobium resinovorum comb. nov., with Novosphingobium subarcticum (Nohynek et al. 1996) Takeuchi et al. 2001 as a later heterotypic synonym. Int J Syst Evol Microbiol 57, 1906-1908.
23. Liu, Z.-P., Wang, B.-J., Liu, Y.-H. & Liu, S.-J. (2005). Novosphingobium taihuense sp. nov., a novel aromatic-compound-degrading bacterium isolated from Taihu Lake, China. Int J Syst Evol Microbiol 55, 1229-1232.
24. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
25. Niharika, N., Moskalikova, H., Kaur, J., Sedlackova, M., Hampl, A., Damborsky, J., Prokop, Z. & Lal, R. (2012). Novosphingobium barchaimii sp. nov., isolated from a hexachlorocyclohexane-contaminated soil. Int J Syst Evol Microbiol 63, 667-672.
26. Saxena, A., Anand, S., Dua, A., Sangwan, N., Khan, F. & Lal, R. (2012). Novosphingobium lindaniclasticum sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium isolated from HCH dumpsite. Int J Syst Evol Microbiol (in press).
27. Sohn, J. H., Kwon, K. K., Kang, J. H., Jung, H. B. & Kim, S. J. (2004). Novosphingobium pentaromativorans sp. nov., a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment. Int J Syst Evol Microbiol 54, 1483-1487.
28. Stamatakis, A. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690.
29. Stolz, A., Busse, H.-J. & Kämpfer, P. (2007). Pseudomonas knackmussii sp. nov. Int J Syst Evol Microbiol 57, 572-576.
30. Suzuki, S. & Hiraishi, A. (2007). Novosphingobium naphthalenivorans sp. nov., a naphthalene-degrading bacterium isolated from polychlorinated-dioxin-contaminated environments. J Gen Appl Microbiol 53, 221-228.
31. Takeuchi, M., Hamana, K. & Hiraishi, A. (2001). Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 51, 1405-1417.
32. Tiirola, M. A., Busse, H.-J., Kämpfer, P. & Männistö, M. K. (2005). Novosphingobium lentum sp. nov., a psychrotolerant bacterium from a polychlorophenol bioremediation process. Int J Syst Evol Microbiol 55, 583-588.
33. Tindall, B. J. (1990a). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
34. Tindall, B. J. (1990b). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
35. Yarza, P., Richter, M., Peplies, J., Euzeby, J., Amann, R., Schleifer, K. H., Ludwig, W., Glöckner, F. O. & Rosselló-Móra, R. (2008). The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 31, 241-250.
36. Yuan, J., Lai, Q., Zheng, T. & Shao, Z. (2009). Novosphingobium indicum sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from a deep-sea environment. Int J Syst Evol Microbiol 59, 2084-2088.