Novosphingobium acidiphilum sp. nov., an acidophilic salt-sensitive bacterium isolated from the humic acid-rich Lake Grosse Fuchskuhle

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 2, 2009, Pages 323-330

  Glaeser, Stefanie P ^a   Kämpfer, Peter ^a   Busse, Hans Jürgen ^b   Langer, Stefan ^b   Glaeser, Jens ^a  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

^b UNIVERSITY OF VETERINARY MEDICINE   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; FATTY ACID; GLYCOSPHINGOLIPID; HUMIC ACID; LAKE WATER; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; POLYAMINE; RNA 16S; SODIUM CHLORIDE; UBIDECARENONE; UBIQUINONE; INORGANIC SALT;

ACIDOPHILE; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; GERMANY; GRAM NEGATIVE BACTERIUM; LAKE; NEW SPECIES; NONHUMAN; NOVOSPHINGOBIUM ACIDIPHILUM; NOVOSPHINGOBIUM HASSIACUM; NOVOSPHINGOBIUM NITROGENIFIGENS; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA SEQUENCE; SALT TOLERANCE; SPHINGOMONADACEAE; CHEMISTRY; CLASSIFICATION; GENETICS; HUMIC SUBSTANCE; MICROBIOLOGY; MOLECULAR GENETICS; PH; PHYLOGENY; SPECIES DIFFERENCE; ULTRASTRUCTURE;

ACIDIPHILIUM SP.; ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); NEGIBACTERIA; NOVOSPHINGOBIUM; NOVOSPHINGOBIUM HASSIACUM; SPHINGOMONADACEAE;

FATTY ACIDS; HUMIC SUBSTANCES; HYDROGEN-ION CONCENTRATION; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SALTS; SPECIES SPECIFICITY; SPHINGOMONADACEAE; WATER MICROBIOLOGY;

EID: 63449138474     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65852-0     Document Type: Article

References (39)

1. Addison, S. L., Foote, S. M., Reid, N. M. & Lloyd-Jones, G. (2007). Novosphingobium nitrogenifigens sp. nov., a polyhydroxyalkanoate-accumulating diazotroph isolated from a New Zealand pulp and paper wastewater. Int J Syst Evol Microbiol 57, 2467-2471.
2. Airs, R. L., Atkinson, J. E. & Keely, B. J. (2001). Development and application of a high resolution liquid chromatographic method for the analysis of complex pigment distributions. J Chromatogr A 917, 167-177.
3. Allgaier, M. & Grossart, H.-P. (2006). Seasonal dynamics and phylogenetic diversity of free-living and particle-associated bacterial communities in four lakes in northeastern Germany. Aquat Microb Ecol 45, 115-128.
4. Altenburger, P., Kämpfer, P., Makristathis, A., Lubitz, W. & Busse, H.-J. (1996). Classification of bacteria isolated from a medieval wall painting. J Biotechnol 47, 39-52.
5. Balch, W. E., Fox, G. E., Magrum, L. J., Woese, C. R. & Wolfe, R. S. (1979). Methanogens: reevaluation of a unique biological group. Microbiol Rev 43, 260-296.
6. Balkwill, D. L., Drake, G. R., Reeves, R. H., Frederickson, J. K., White, D. C., Ringelberg, D. B., Chandler, D. P., Romine, M. F., Kennedy, D. W. & Spadoni, C. M. (1997). Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov. Int J Syst Bacteriol 47, 191-201.
7. 2-fixing yellow-pigmented bacteria related to Pseudomonas paucimobilis. Can J Microbiol 36, 850-855.
8. Bartscht, K., Cypionka, H. & Overmann, J. (1999). Evaluation of cell activity and of methods for the cultivation of bacteria from a natural lake community. FEMS Microbiol Ecol 28, 249-259.
9. Brosius, J., Dull, T., Sleeter, D. & Noller, H. (1981). Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol 148, 107-127.
10. Burkert, U., Warnecke, F., Babenzien, D., Zwirnmann, E. & Pernthaler, J. (2003). Members of a readily enriched betaproteobacterial clade are common in surface waters of a humic lake. Appl Environ Microbiol 69, 6550-6559.
11. Busse, H.-J. & Auling, G. (1988). Polyamine pattern as a chemotaxonomic marker within the Proteobacteria. Syst Appl Microbiol 11, 1-8.
12. Busse, H.-J., Kämpfer, P. & Denner, E. B. M. (1999). Chemotaxonomic characterization of Sphingomonas. J Ind Microbiol Biotechnol 23, 242-251.
13. Busse, H.-J., Denner, E. B. M., Buczolits, S., Salkinoja-Salonen, M., Bennasar, A. & Kämpfer, P. (2003). Sphingomonas aurantiaca sp. nov., Sphingomonas aerolata sp. nov. and Sphingomonas faeni sp. nov., air- and dustborne and Antarctic, orange pigmented, psychrotolerant bacteria, and emended description of the genus Sphingomonas. Int J Syst Evol Microbiol 53, 1253-1260.
14. Fujii, K., Kikuchi, S., Satomi, M., Ushio-Sata, N. & Morita, N. (2003). Novosphingobium tardaugens sp. nov., an oestradiol-degrading bacterium isolated from activated sludge of a sewage treatment plant in Tokyo. Int J Syst Evol Microbiol 53, 47-52.
15. Gich, F. & Overmann, J. (2006). Sandarakinorhabdus limnophila gen. nov., sp. nov., a novel bacteriochlorophyll a-containing, obligately aerobic bacterium isolated from freshwater lakes. Int J Syst Evol Microbiol 56, 847-854.
16. Glöckner, F. O., Zaichikov, E., Belkova, N., Denissova, L., Pernthaler, J., Pernthaler, A. & Amann, R. (2000). Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of Actinobacteria. Appl Environ Microbiol 66, 5053-5065.
17. Jaspers, E., Nauhaus, K., Cypionka, H. & Overmann, J. (2001). Multitude and temporal variability of ecological niches as indicated by the diversity of cultivated bacterioplankton. FEMS Microbiol Ecol 36, 153-164.
18. Jenkins, C. L., Andrewes, A. G., McQuade, T. J. & Starr, M. D. (1979). The pigment of Pseudomonas paucimobilis is a carotenoid (nostox-anthin), rather than a brominated aryl-polyene (xanthomonadin). Curr Microbiol 3, 1-4.
19. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
20. Kämpfer, P., Steiof, M. & Dott, W. (1991). Microbiological characterization of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria. Microb Ecol 21, 227-251.
21. Kämpfer, P., Witzenberger, R., Denner, E. B. M., Busse, H.-J. & Neef, A. (2002). Novosphingobium hassiacum sp. nov., a new species isolated from an aerated sewage pond. Syst Appl Microbiol 25, 37-45.
22. Kim, M. K., Schubert, K., Im, W.-T., Kim, K.-H., Lee, S.-T. & Overmann, J. (2007). Sphingomonas kaistensis sp. nov., a novel alphaproteobacterium containing pufLM genes. Int J Syst Evol Microbiol 57, 1527-1534.
23. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5, 150-163.
24. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
25. Liu, Z.-P., Wang, B.-J., Liu, Y.-H. & Liu, S.-J. (2005). Novosphingobium taihuense sp. nov., a novel aromatic-compound-degrading bacterium isolated from Taihu Lake, China. Int J Syst Evol Microbiol 55, 1229-1232.
26. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
27. Neef, A., Witzenberger, R. & Kämpfer, P. (1999). Detection of sphingomonads and in situ identification in activated sludge using 16S rRNA-targeted oligonucleotide probes. J Ind Microbiol Biotechnol 23, 261-267.
28. Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 151-156.
29. Rainey, F. A., Ward-Rainey, N., Gliesche, C. G. & Stackebrandt, E. (1998). Phylogenetic analysis and intrageneric structure of the genus Hyphomicrobium and the related genus Filomicrobium. Int J Syst Bacteriol 48, 635-639.
30. Sohn, J. H., Kwon, K. K., Kang, J.-H., Jung, H.-B. & Kim, S.-J. (2004). Novosphingobium pentaromativorans sp. nov., a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment. Int J Syst Evol Microbiol 54, 1483-1487.
31. Stolz, A., Busse, H.-J. & Kämpfer, P. (2007). Pseudomonas knackmussii sp. nov. Int J Syst Evol Microbiol 57, 572-576.
32. Suzuki, S. & Hiraishi, A. (2007). Novosphingobium naphthalenivorans sp. nov., a naphthalene-degrading bacterium isolated from polychlorinated-dioxin-contaminated environments. J Gen Appl Microbiol 53, 221-228.
33. Takeuchi, M., Hamana, K. & Hiraishi, A. (2001). Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 51, 1405-1417.
34. Tiirola, M. A., Männistö, M. K., Puhakka, J. A. & Kulomaa, M. S. (2002). Isolation and characterization of Novosphingobium sp. strain MT1, a dominant polychlorophenol-degrading strain in a groundwater bioremediation system. Appl Environ Microbiol 68, 173-180.
35. Tiirola, M. A., Busse, H.-J., Kämpfer, P. & Männistö, M. K. (2005). Novosphingobium lentum sp. nov., a psychrotolerant bacterium from a polychlorophenol bioremediation process. Int J Syst Evol Microbiol 55, 583-588.
36. Tindall, B. J. (1990a). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
37. Tindall, B. J. (1990b). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
38. Tschech, A. & Pfennig, N. (1984). Growth yield increase linked to caffeate reduction in Acetobacterium woodii. Arch Microbiol 137, 163-167.
39. Yabuuchi, E., Yano, I., Oyaizu, H., Hashimoto, Y., Ezaki, T. & Yamamoto, H. (1990). Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb. nov., and two genospecies of the genus Sphingomonas. Microbiol Immunol 34, 99-119.