Novosphingobium soli sp. nov., isolated from soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 2, 2011, Pages 259-263

  Kämpfer, Peter ^a   Young, Chiu Chung ^b   Busse, Hans Jürgen ^c   Lin, Shi Yao ^b   Rekha, P D ^d   Arun, A B ^d   Chen, Wen Ming ^e   Shen, Fo Ting ^b   Wu, Y H ^b  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

^b NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^c UNIVERSITY OF VETERINARY MEDICINE   (Austria)

^d Yenepoya   (India)

^e NATIONAL KAOHSIUNG UNIVERSITY OF APPLIED SCIENCES   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; GLYCOSPHINGOLIPID; HYDROXY FATTY ACID; LIPID; OIL; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; POLYAMINE; RNA 16S; SPERMIDINE; UBIQUINONE;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; DNA DNA HYBRIDIZATION; GRAM NEGATIVE AEROBIC RODS AND COCCI; NONHUMAN; NOVOSPHINGOBIUM SOLI; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SOIL; SOIL POLLUTANT; TAIWAN;

BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; LIPIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PIGMENTS, BIOLOGICAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPHINGOMONADACEAE; TAIWAN; UBIQUINONE;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; NOVOSPHINGOBIUM;

EID: 79951587751     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.022178-0     Document Type: Article

References (32)

1. Addison, S. L., Foote, S. M., Reid, N. M. & Lloyd-Jones, G. (2007). Novosphingobium nitrogenifigens sp. nov., a polyhydroxyalkanoate-accumulating diazotroph isolated from a New Zealand pulp and paper wastewater. Int J Syst Evol Microbiol 57, 2467-2471. (Pubitemid 350187401)
2. Altenburger, P., Kämpfer, P., Makristathis, A., Lubitz, W. & Busse, H.-J. (1996). Classification of bacteria isolated from a medieval wall painting. J Biotechnol 47, 39-52. (Pubitemid 26242767)
3. Balkwill, D. L., Drake, G. R., Reeves, R. H., Frederickson, J. K., White, D. C., Ringelberg, D. B., Chandler, D. P., Romine, M. F., Kennedy, D. W. & Spadoni, C. M. (1997). Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov. Int J Syst Bacteriol 47, 191-201.
4. Brosius, J., Dull, T., Sleeter, D. & Noller, H. (1981). Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol 148, 107-127. (Pubitemid 11084759)
5. Busse, H.-J. & Auling, G. (1988). Polyamine pattern as a chemotaxonomic marker within the Proteobacteria. Syst Appl Microbiol 11, 1-8.
6. Busse, H.-J., Kämpfer, P. & Denner, E. B. M. (1999). Chemotaxonomic characterization of Sphingomonas. J Ind Microbiol Biotechnol 23, 242-251.
7. Busse, H.-J., Denner, E. B. M., Buczolits, S., Salkinoja-Salonen, M., Bennasar, A. & Kämpfer, P. (2003). Sphingomonas aurantiaca sp. nov., Sphingomonas aerolata sp. nov. and Sphingomonas faeni sp. nov., air- and dustborne and Antarctic, orange-pigmented, psychrotolerant bacteria, and emended description of the genus Sphingomonas. Int J Syst Evol Microbiol 53, 1253-1260. (Pubitemid 37184951)
8. Fujii, K., Kikuchi, S., Satomi, M., Ushio-Sata, N. & Morita, N. (2003). Novosphingobium tardaugens sp. nov., an oestradiol-degrading bacterium isolated from activated sludge of a sewage treatment plant in Tokyo. Int J Syst Evol Microbiol 53, 47-52. (Pubitemid 36285219)
9. Glaeser, S. P., Kämpfer, P., Busse, H.-J., Langer, S. & Glaeser, J. (2009). Novosphingobium acidiphilum sp. nov., an acidophilic salt-sensitive bacterium isolated from the humic acid-rich Lake Grosse Fuchskuhle. Int J Syst Evol Microbiol 59, 323-330.
10. Gupta, S. K., Lal, D. & Lal, R. (2009). Novosphingobium panipatense sp. nov. and Novosphingobium mathurense sp. nov., from oil-contaminated soil. Int J Syst Evol Microbiol 59, 156-161.
11. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005. (Pubitemid 26380214)
12. Kämpfer, P., Steiof, M. & Dott, W. (1991). Microbiological characterization of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria. Microb Ecol 21, 227-251.
13. Kämpfer, P., Witzenberger, R., Denner, E. B. M., Busse, H.-J. & Neef, A. (2002). Novosphingobium hassiacum sp. nov., a new species isolated from an aerated sewage pond. Syst Appl Microbiol 25, 37-45. (Pubitemid 34602143)
14. Kim, M. K., Schubert, K., Im, W.-T., Kim, K.-H., Lee, S.-T. & Overmann, J. (2007). Sphingomonas kaistensis sp. nov., a novel alphaproteobacterium containing pufLM genes. Int J Syst Evol Microbiol 57, 1527-1534. (Pubitemid 47163001)
15. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
16. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
17. Lim, Y. W., Moon, E. Y. & Chun, J. (2007). Reclassification of Flavobacterium resinovorum Delaporte and Daste 1956 as Novosphingobium resinovorum comb. nov., with Novosphingobium subarcticum (Nohynek et al. 1996) Takeuchi et al. 2001 as a later heterotypic synonym. Int J Syst Evol Microbiol 57, 1906-1908. (Pubitemid 47308435)
18. Liu, Z.-P., Wang, B.-J., Liu, Y.-H. & Liu, S.-J. (2005). Novosphingobium taihuense sp. nov., a novel aromatic-compound-degrading bacterium isolated from Taihu Lake, China. Int J Syst Evol Microbiol 55, 1229-1232. (Pubitemid 40731669)
19. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371. (Pubitemid 38854737)
20. Neef, A., Witzenberger, R. & Kämpfer, P. (1999). Detection of sphingomonads and in situ identification in activated sludge using 16S rRNA-targeted oligonucleotide probes. J Ind Microbiol Biotechnol 23, 261-267. (Pubitemid 30066578)
21. Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 151-156.
22. Sohn, J. H., Kwon, K.-K., Kang, J.-H., Jung, H.-B. & Kim, S.-J. (2004). Novosphingobium pentaromativorans sp. nov., a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment. Int J Syst Evol Microbiol 54, 1483-1487. (Pubitemid 39359960)
23. Stolz, A., Busse, H.-J. & Kämpfer, P. (2007). Pseudomonas knackmussii sp. nov. Int J Syst Evol Microbiol 57, 572-576. (Pubitemid 46437873)
24. Suzuki, S. & Hiraishi, A. (2007). Novosphingobium naphthalenivorans sp. nov., a naphthalene-degrading bacterium isolated from polychlorinated- dioxin-contaminated environments. J Gen Appl Microbiol 53, 221-228.
25. Takeuchi, M., Sakane, T., Miyoko, Y., Kazuhide, Y., Hamana, K. & Yokota, A. (1995). Taxonomic study of bacteria isolated from plants: proposal of Sphingomonas rosa sp. nov., Sphingomonas pruni sp. nov., Sphingomonas asaccharolytica sp. nov., and Sphingomonas mali sp. nov. Int J Syst Bacteriol 45, 334-341.
26. Takeuchi, M., Hamana, K. & Hiraishi, A. (2001). Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 51, 1405-1417. (Pubitemid 32700636)
27. Tiirola, M. A., Männistö, M. K., Puhakka, J. A. & Kulomaa, M. S. (2002). Isolation and characterization of Novosphingobium sp. strain MT1, a dominant polychlorophenol-degrading strain in a groundwater bioremediation system. Appl Environ Microbiol 68, 173-180. (Pubitemid 34031177)
28. Tiirola, M. A., Busse, H.-J., Kämpfer, P. & Männistö, M. K. (2005). Novosphingobium lentum sp. nov., a psychrotolerant bacterium from a polychlorophenol bioremediation process. Int J Syst Evol Microbiol 55, 583-588. (Pubitemid 40485037)
29. Tindall, B. J. (1990a). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
30. Tindall, B. J. (1990b). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
31. Yabuuchi, E., Yano, I., Oyaizu, H., Hashimoto, Y., Ezaki, T. & Yamamoto, H. (1990). Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb. nov., and two genospecies of the genus Sphingomonas. Microbiol Immunol 34, 99-119. (Pubitemid 20156327)
32. Yuan, J., Lai, Q., Zheng, T. & Shao, Z. (2009). Novosphingobium indicum sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from a deep-sea environment. Int J Syst Evol Microbiol 59, 2084-2088.