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Volumn 79, Issue 13, 2013, Pages 3906-3916

Bacterial communities associated with subsurface geochemical processes in continental serpentinite springs

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL COMMUNITY; DEEP-SEA HYDROTHERMAL VENTS; GEOCHEMICAL MEASUREMENTS; GEOCHEMICAL PROCESS; MICROBIAL COMMUNITIES; MOLECULAR FINGERPRINTING; ORGANIC CARBON COMPOUNDS; SUBSURFACE BIOSPHERE;

EID: 84879801118     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00330-13     Document Type: Article
Times cited : (89)

References (50)
  • 2
  • 4
    • 84879815524 scopus 로고    scopus 로고
    • Nature and extent of the deep biosphere
    • Colwell FS, D'Hondt S. 2013. Nature and extent of the deep biosphere. Rev. Mineral. Geochem. 75:547-574.
    • (2013) Rev. Mineral. Geochem. , vol.75 , pp. 547-574
    • Colwell, F.S.1    D'Hondt, S.2
  • 5
    • 84874539727 scopus 로고    scopus 로고
    • The deep subsurface biosphere in igneous ocean crust: frontier habitats for microbiological exploration
    • doi:10.3389/fmicb.2012.00008
    • Edwards KJ, Fisher AT, Wheat CG. 2012. The deep subsurface biosphere in igneous ocean crust: frontier habitats for microbiological exploration. Front. Microbiol. 3:8. doi:10.3389/fmicb.2012.00008.
    • (2012) Front. Microbiol. , vol.3 , pp. 8
    • Edwards, K.J.1    Fisher, A.T.2    Wheat, C.G.3
  • 6
    • 23944468503 scopus 로고    scopus 로고
    • Hydrogen-driven subsurface lithoautotrophic microbial ecosystems (SLiMEs): do they exist and why should we care
    • doi:10.1016/j.tim.2005.07.010.
    • Nealson KH, Inagaki F, Takai K. 2005. Hydrogen-driven subsurface lithoautotrophic microbial ecosystems (SLiMEs): do they exist and why should we care? Trends Microbiol. 13:9. doi:10.1016/j.tim.2005.07.010.
    • (2005) Trends Microbiol , vol.13 , pp. 9
    • Nealson, K.H.1    Inagaki, F.2    Takai, K.3
  • 9
    • 80052574209 scopus 로고    scopus 로고
    • Physiological differentiation within a single-species biofilm fueled by serpentinization
    • doi:10.1128/mBio.00127-11
    • Brazelton WJ, Mehta MP, Kelley DS, Baross JA. 2011. Physiological differentiation within a single-species biofilm fueled by serpentinization. mBio 2(4):e00127-11. doi:10.1128/mBio.00127-11.
    • (2011) mBio , vol.2 , Issue.4
    • Brazelton, W.J.1    Mehta, M.P.2    Kelley, D.S.3    Baross, J.A.4
  • 11
    • 4644245661 scopus 로고    scopus 로고
    • Low archaeal diversity linked to subseafloor geochemical processes at the Lost City hydrothermal field, mid-Atlantic ridge
    • Schrenk MO, Kelley DS, Bolton SA, Baross JA. 2004. Low archaeal diversity linked to subseafloor geochemical processes at the Lost City hydrothermal field, mid-Atlantic ridge. Environ. Microbiol. 6:1086-1095.
    • (2004) Environ. Microbiol. , vol.6 , pp. 1086-1095
    • Schrenk, M.O.1    Kelley, D.S.2    Bolton, S.A.3    Baross, J.A.4
  • 13
    • 0027790373 scopus 로고
    • Deep-sea smokers: windows to a subsurface biosphere? Geochim
    • Deming JW, Baross JA. 1993. Deep-sea smokers: windows to a subsurface biosphere? Geochim. Cosmochim. Acta 57:3219-3230.
    • (1993) Cosmochim. Acta , vol.57 , pp. 3219-3230
    • Deming, J.W.1    Baross, J.A.2
  • 15
    • 84878245415 scopus 로고    scopus 로고
    • Geochemistry of a continental site of serpentinization, the Tablelands Ophiolite, Gros Morne National Park: a Mars analogue
    • Icarus, in press. doi:10.1016/j.icarus.2012.07.004
    • Szponar N, Brazelton WJ, Schrenk MO, Bower DM, Steele A, Morrill PL. Geochemistry of a continental site of serpentinization, the Tablelands Ophiolite, Gros Morne National Park: a Mars analogue. Icarus, in press. doi:10.1016/j.icarus.2012.07.004.
    • Szponar, N.1    Brazelton, W.J.2    Schrenk, M.O.3    Bower, D.M.4    Steele, A.5    Morrill, P.L.6
  • 16
    • 84862703105 scopus 로고    scopus 로고
    • Metagenomic evidence for H2 oxidation and H2 production by serpentinite-hosted subsurface microbial communities.
    • doi:10.3389/fmicb.2011 .00268.
    • Brazelton WJ, Nelson B, Schrenk MO. 2012. Metagenomic evidence for H2 oxidation and H2 production by serpentinite-hosted subsurface microbial communities. Front. Microbiol. 2:268. doi:10.3389/fmicb.2011 .00268.
    • (2012) Front. Microbiol. , vol.2 , pp. 268
    • Brazelton, W.J.1    Nelson, B.2    Schrenk, M.O.3
  • 17
    • 0038654460 scopus 로고    scopus 로고
    • Incidence and diversity of microorganisms within the walls of an active deep-sea sulfide chimney
    • Schrenk MO, Kelley DS, Delaney JR, Baross JA. 2003. Incidence and diversity of microorganisms within the walls of an active deep-sea sulfide chimney. Appl. Environ. Microbiol. 69:3580-3592.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 3580-3592
    • Schrenk, M.O.1    Kelley, D.S.2    Delaney, J.R.3    Baross, J.A.4
  • 18
    • 0017654644 scopus 로고
    • Use of nuclepore filters for counting bacteria by fluorescence microscopy
    • Hobbie JE, Daley RJ, Jasper S. 1977. Use of nuclepore filters for counting bacteria by fluorescence microscopy. Appl. Environ. Microbiol. 33:1225- 1228.
    • (1977) Appl. Environ. Microbiol. , vol.33
    • Hobbie, J.E.1    Daley, R.J.2    Jasper, S.3
  • 19
    • 0036211208 scopus 로고    scopus 로고
    • Temporal changes in archaeal diversity and chemistry in a mid-ocean ridge subseafloor habitat
    • Huber JA, Butterfield DA, Baross JA. 2002. Temporal changes in archaeal diversity and chemistry in a mid-ocean ridge subseafloor habitat. Appl. Environ. Microbiol. 68:1585-1594.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1585-1594
    • Huber, J.A.1    Butterfield, D.A.2    Baross, J.A.3
  • 22
    • 57149093416 scopus 로고    scopus 로고
    • Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing
    • doi:10.1371/journal .pgen.1000255
    • Huse SM, Dethlefsen L, Huber JA, Welch DM, Relman DA, Sogin ML. 2008. Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genet. 4:e1000255. doi:10.1371/journal .pgen.1000255.
    • (2008) PLoS Genet. , vol.4
    • Huse, S.M.1    Dethlefsen, L.2    Huber, J.A.3    Welch, D.M.4    Relman, D.A.5    Sogin, M.L.6
  • 23
    • 77955251092 scopus 로고    scopus 로고
    • Ironing out the wrinkles in the rare biosphere through improved OTU clustering
    • Huse SM, Welch DM, Morrison HG, Sogin ML. 2010. Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ. Microbiol. 12:1889-1898.
    • (2010) Environ. Microbiol. , vol.12 , pp. 1889-1898
    • Huse, S.M.1    Welch, D.M.2    Morrison, H.G.3    Sogin, M.L.4
  • 25
    • 79960698975 scopus 로고    scopus 로고
    • Btrim: a fast, lightweight adapter and quality trimming program for next-generation sequencing technologies
    • Kong Y. 2011. Btrim: a fast, lightweight adapter and quality trimming program for next-generation sequencing technologies. Genomics 98:152- 153.
    • (2011) Genomics , vol.98
    • Kong, Y.1
  • 26
    • 79958196766 scopus 로고    scopus 로고
    • Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis
    • Schloss PD, Westcott SL. 2011. Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis. Appl. Environ. Microbiol. 77:3219-3226.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 3219-3226
    • Schloss, P.D.1    Westcott, S.L.2
  • 27
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35:7188-7196.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6    Glöckner, F.O.7
  • 30
    • 84864134721 scopus 로고    scopus 로고
    • SINA: accurate highthroughput multiple sequence alignment of ribosomal RNA genes
    • Pruesse E, Peplies J, Glöckner FO. 2012. SINA: accurate highthroughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28:1823-1829.
    • (2012) Bioinformatics , vol.28 , pp. 1823-1829
    • Pruesse, E.1    Peplies, J.2    Glöckner, F.O.3
  • 31
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 32
    • 79955456912 scopus 로고    scopus 로고
    • Performance, accuracy, and web server for evolutionary placement of short sequence reads under maximum likelihood
    • Berger SA, Krompass D, Stamatakis A. 2011. Performance, accuracy, and web server for evolutionary placement of short sequence reads under maximum likelihood. Syst. Biol. 60:291-302.
    • (2011) Syst. Biol. , vol.60 , pp. 291-302
    • Berger, S.A.1    Krompass, D.2    Stamatakis, A.3
  • 33
    • 33748777657 scopus 로고    scopus 로고
    • Methane- and sulfur-metabolizing microbial communities dominate the Lost City hydrothermal field ecosystem
    • Brazelton WJ, Schrenk MO, Kelley DS, Baross JA. 2006. Methane- and sulfur-metabolizing microbial communities dominate the Lost City hydrothermal field ecosystem. Appl. Environ. Microbiol. 72:6257-6270.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 6257-6270
    • Brazelton, W.J.1    Schrenk, M.O.2    Kelley, D.S.3    Baross, J.A.4
  • 34
    • 33645450631 scopus 로고    scopus 로고
    • Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes
    • Abdo Z, Schüette UME, Bent SJ, Williams CJ, Forney LJ, Joyce P. 2006. Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes. Environ. Microbiol. 8:929-938.
    • (2006) Environ. Microbiol. , vol.8 , pp. 929-938
    • Abdo, Z.1    Schüette, U.M.E.2    Bent, S.J.3    Williams, C.J.4    Forney, L.J.5    Joyce, P.6
  • 35
    • 33144466522 scopus 로고    scopus 로고
    • New threshold and confidence estimates for terminal restriction fragment length polymorphism analysis of complex bacterial communities
    • Osborne CA, Rees GN, Bernstein Y, Janssen PH. 2006. New threshold and confidence estimates for terminal restriction fragment length polymorphism analysis of complex bacterial communities. Appl. Environ. Microbiol. 72:1270-1278.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 1270-1278
    • Osborne, C.A.1    Rees, G.N.2    Bernstein, Y.3    Janssen, P.H.4
  • 36
    • 0027804103 scopus 로고
    • Non-parametric multivariate analyses of changes in community structure
    • Clarke KR. 1993. Non-parametric multivariate analyses of changes in community structure. Austral. Ecol. 18:117-143.
    • (1993) Austral. Ecol. , vol.18 , pp. 117-143
    • Clarke, K.R.1
  • 37
    • 54549105879 scopus 로고    scopus 로고
    • Community structure of marine bacterioplankton: patterns, networks, and relationships to function
    • Fuhrman J, Steele J. 2008. Community structure of marine bacterioplankton: patterns, networks, and relationships to function. Aquat. Microb. Ecol. 53:69-81.
    • (2008) Aquat. Microb. Ecol. , vol.53 , pp. 69-81
    • Fuhrman, J.1    Steele, J.2
  • 38
    • 84904503941 scopus 로고    scopus 로고
    • ltm: an R package for latent variable modeling
    • Rizopoulos D. 2006. ltm: an R package for latent variable modeling. J. Stat. Softw. 17:5.
    • (2006) J. Stat. Softw. , vol.17 , pp. 5
    • Rizopoulos, D.1
  • 40
    • 16844374281 scopus 로고    scopus 로고
    • Malikiagranosa gen. nov., sp. nov., a novel polyhydroxyalkanoate- and polyphosphateaccumulating bacterium isolated from activated sludge, and reclassification of Pseudomonas spinosa as Malikiaspinosa comb. nov
    • Spring S, Wagner M, Schumann P, Kämpfer P. 2005. Malikiagranosa gen. nov., sp. nov., a novel polyhydroxyalkanoate- and polyphosphateaccumulating bacterium isolated from activated sludge, and reclassification of Pseudomonas spinosa as Malikiaspinosa comb. nov. Int. J. Syst. Evol. Microbiol. 55:621-629.
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 621-629
    • Spring, S.1    Wagner, M.2    Schumann, P.3    Kämpfer, P.4
  • 43
    • 84863287529 scopus 로고    scopus 로고
    • Microbial communities in long-term, water-flooded petroleum reservoirs with different in situ temperatures in the Huabei Oilfield, China
    • doi:10.1371/journal.pone.0033535
    • Tang Y-Q, Li Y, Zhao J-Y, Chi C-Q, Huang L-X, Dong H-P, Wu X-L. 2012. Microbial communities in long-term, water-flooded petroleum reservoirs with different in situ temperatures in the Huabei Oilfield, China. PLoS One 7:e33535. doi:10.1371/journal.pone.0033535.
    • (2012) PLoS One , vol.7
    • Tang, Y-Q.1    Li, Y.2    Zhao, J-Y.3    Chi, C-Q.4    Huang, L-X.5    Dong, H-P.6    Wu, X-L.7
  • 45
    • 0024333565 scopus 로고
    • Hydrogenophaga, a new genus of hydrogen-oxidizing bacteria that includes Hydrogenophagaflava comb- .nov. (formerlyPseudomonas flava), Hydrogenophagapalleronii (formerly Pseudomonas palleronii), Hydrogenophagapseudoflava (formerly Pseudomonas pseudoflava and "Pseudomonas carboxydoflava"), and Hydrogenophagataeniospiralis (formerly Pseudomonas taeniospiralis)
    • Willems A, Busse J, Goor M, Pot B, Falsen E, Jantzen E, Hoste B, Gillis M, Kersters K, Auling G, De Ley J. 1989. Hydrogenophaga, a new genus of hydrogen-oxidizing bacteria that includes Hydrogenophagaflava comb- .nov. (formerlyPseudomonas flava), Hydrogenophagapalleronii (formerly Pseudomonas palleronii), Hydrogenophagapseudoflava (formerly Pseudomonas pseudoflava and "Pseudomonas carboxydoflava"), and Hydrogenophagataeniospiralis (formerly Pseudomonas taeniospiralis). Int. J. Syst. Bacteriol. 39:319-333.
    • (1989) Int. J. Syst. Bacteriol. , vol.39 , pp. 319-333
    • Willems, A.1    Busse, J.2    Goor, M.3    Pot, B.4    Falsen, E.5    Jantzen, E.6    Hoste, B.7    Gillis, M.8    Kersters, K.9    Auling, G.10    De Ley, J.11
  • 46
    • 80955177493 scopus 로고    scopus 로고
    • Characterization of bacterial diversity to a depth of 1500 m in the Outokumpu deep borehole, Fennoscandian Shield
    • Itävaara M, Nyyssönen M, Kapanen A, Nousiainen A, Ahonen L, Kukkonen I. 2011. Characterization of bacterial diversity to a depth of 1500 m in the Outokumpu deep borehole, Fennoscandian Shield. FEMS Microbiol. Ecol. 77:295-309.
    • (2011) FEMS Microbiol. Ecol. , vol.77 , pp. 295-309
    • Itävaara, M.1    Nyyssönen, M.2    Kapanen, A.3    Nousiainen, A.4    Ahonen, L.5    Kukkonen, I.6


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