Malikia granosa gen. nov., sp. nov., a novel polyhydroxyalkanoate- and polyphosphate- accumulating bacterium isolated from activated sludge, and reclassification of Pseudomonas spinosa as Malikia spinosa comb. nov.

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 2, 2005, Pages 621-629

  Spring, Stefan ^a   Wagner, Michael ^b   Schumann, Peter ^a   Kämpfer, Peter ^c  

^a LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^b UNIVERSITY OF VIENNA   (Austria)

^c JUSTUS LIEBIG UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ATOVAQUONE; BACTERIAL DNA; BACTERIAL RNA; HYDROXY FATTY ACID; NITROREDUCTASE; POLYHYDROXYALKANOIC ACID; POLYPHOSPHATE; RNA 16S;

ACTIVATED SLUDGE; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CELL GRANULE; DNA CONTENT; DNA DNA HYBRIDIZATION; GENE SEQUENCE; LIPID COMPOSITION; MALIKIA SPINOSA; MOLECULAR PHYLOGENY; NEW COMBINATION (TAXONOMY); NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPIC VARIATION; PHYLOGENETIC TREE; PRIORITY JOURNAL; PSEUDOMONAS; PSEUDOMONAS SPINOSA; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; STRAIN DIFFERENCE; TAXONOMIC RANK; WASTE WATER MANAGEMENT;

COMAMONADACEAE; DNA, BACTERIAL; DNA, RIBOSOMAL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; POLYESTERS; POLYPHOSPHATES; PSEUDOMONAS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE;

BACTERIA (MICROORGANISMS); HYDROGENOPHAGA; MACROMONAS; MACROMONAS BIPUNCTATA; MALIKIA; NEGIBACTERIA; PSEUDOMONAS; PSEUDOMONAS SPINOSA;

EID: 16844374281     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63356-0     Document Type: Article

References (44)

1. Blackall, L. L., Crocetti, G. R., Saunders, A. M. & Bond, P. L. (2002). A review and update of the microbiology of enhanced biological phosphorus removal in wastewater treatment plants. Antonie van Leeuwenhoek 81, 681-691.
2. Bryant, M. P. (1972). Commentary on the Hungate technique for the culture of anaerobic bacteria. Am J Clin Nutr 25, 1324-1328.
3. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
4. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
5. Dubinina, G. A. & Grabovich, M. Y. (1984). Isolation, cultivation, and characteristics of Macromonas bipunctata. Microbiology (English translation of Mikrobiologiya) 53, 610-617.
6. Felsenstein, J. (1982). Numerical methods for inferring phylogenetic trees. Q Rev Biol 57, 379-404.
7. Ginige, M. P., Hugenholtz, P., Daims, H., Wagner, M., Keller, J. & Blackall, L. L. (2004). Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community. Appl Environ Microbiol 70, 588-596.
8. Hesselmann, R. P., Werlen, C., Hahn, D., van der Meer, J. R. & Zehnder, A. J. (1999). Enrichment, phylogenetic analysis and detection of a bacterium that performs enhanced biological phosphate removal in activated sludge. Syst Appl Microbiol 22, 454-465.
9. Hungate, R. E. (1950). The anaerobic mesophilic cellulolytic bacteria. Bacteriol Rev 14, 1-49.
10. Jenkins, D., Richards, M. G. & Daigger, G. T. (1993). Manual on the Causes and Control of Activated Sludge Bulking and Foaming, 2nd edn. London: Lewis.
11. Juretschko, S., Loy, A., Lehner, A. & Wagner, M. (2002). The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach. Syst Appl Microbiol 25, 84-99.
12. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
13. Kämpfer, P., Steiof, M. & Dott, W. (1991). Microbiological characterization of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria. Microb Ecol 21, 227-251.
14. Kämpfer, P., Denner, E. B. M., Meyer, S., Moore, E. R. B. & Busse, H.-J. (1997). Classification of "Pseudomonas azotocolligans" Anderson 1955, 132, in the genus Sphingomonas as Sphingomonas trueperi sp. nov. Int J Syst Bacteriol 47 577-583.
15. Kämpfer, P., Schulze, R., Jäckel, U., Malik, K. A., Amann, R. & Spring, S. (2005). Hydrogenophaga defluvii sp. nov. and Hydrogenophaga atypica sp. nov., isolated from activated sludge. Int J Syst Evol Microbiol 55, 341-344.
16. Lee, N., Nielsen, P. H., Andreasen, K. H., Juretschko, S., Nielsen, J. L., Schleifer, K.-H. & Wagner, M. (1999). Combination of fluorescent in situ hybridization and microautoradiography - a new tool for structure-function analyses in microbial ecology. Appl Environ Microbiol 65, 1289-1297.
17. Lee, N., Nielsen, P. H., Aspegren, H., Henze, M., Schleifer, K.-H. & la Cour Jansen, J. (2003). Long-term population dynamics and in situ physiology in activated sludge systems with enhanced biological phosphorus removal operated with and without nitrogen removal. Syst Appl Microbiol 26, 211-227.
18. Leifson, E. (1962). Pseudomonas spinosa n. sp. Int Bull Bacteriol Nomencl Taxon 12, 89-92.
19. Ludwig, W., Strunk, O., Westram, R. & 29 other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
20. 2-fixing conditions. FEMS Microbiol Lett 11, 63-67.
21. Manz, W., Wagner, M., Amann, R. & Schleifer, K.-H. (1994). In situ characterization of the microbial consortia active in two wastewater treatment plants. Water Res 28, 1715-1723.
22. Monciardini, P., Cavaletti, L., Schumann, P., Rohde, M. & Donadio, S. (2003). Conexibacter woesei gen. nov., sp. nov., a novel representative of a deep evolutionary line of descent within the class Actinobacteria. Int J Syst Evol Microbiol 53, 569-576.
23. Ostle, A. G. & Holt, J. G. (1982). Nile Blue A as a fluorescent stain for poly-β-hydroxybutyrate. Appl Environ Microbiol 44, 238-241.
24. Ouverney, C. C. & Fuhrman, J. A. (1999). Combined microauto-radiography-16S rRNA probe technique for determination of radioisotope uptake by specific microbial cell types in situ. Appl Environ Microbiol 65, 1746-1752.
25. Purkhold, U., Pommerening-Röser, A., Juretschko, S., Schmid, M. C., Koops, H. P. & Wagner, M. (2000). Phylogeny of all recognized species of ammonia-oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl Environ Microbiol 66, 5368-5382.
26. Reasoner, D. J. & Geldreich, E. E. (1985). A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49, 1-7.
27. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
28. Schulze, R., Spring, S., Amann, R., Huber, I., Ludwig, W., Schleifer, K.-H. & Kämpfer, P. (1999). Genotypic diversity of Acidovorax strains isolated from activated sludge and description of Acidovorax defluvii sp. nov. Syst Appl Microbiol 22, 205-214.
29. Serafim, L. S., Lemos, P. C., Levantesi, C., Tandoi, V., Santos, H. & Reis, M. A. M. (2002). Methods for detection and visualization of intracellular polymers stored by polyphosphate-accumulating microorganisms. J Microbiol Methods 51, 1-18.
30. Seviour, R. J., Mino, T. & Onuki, M. (2003). The microbiology of biological phosphorus removal in activated sludge systems. FEMS Microbiol Rev 27, 99-127.
31. Snaidr, J., Amann, R., Huber, I., Ludwig, W. & Schleifer, K-H. (1997). Phylogenetic analysis and in situ identification of bacteria in activated sludge. Appl Environ Microbiol 63, 2884-2896.
32. Spring, S., Kämpfer, P. & Schleifer, K. H. (2001). Limnobacter thiooxidans gen. nov., sp. nov., a novel thiosulfate-oxidizing bacterium isolated from freshwater lake sediment. Int J Syst Evol Microbiol 51, 1463-1470.
33. 2O-producing bacterium isolated from activated sludge, and transfer of Aquaspirillum gracile to Hylemonella gracilis gen. nov., comb. nov. Int J Syst Evol Microbiol 54 99-106.
34. Stante, L., Cellamare, C. M., Malaspina, F., Bortone, G. & Tolche, A. (1997). Biological phosphorus removal by pure culture of Lampropedia spp. Water Res 31, 1317-1324.
35. Tschech, A. & Pfennig, N. (1984). Growth yield increase linked to caffeate reduction in Acetobacterium woodii. Arch Microbiol 137, 163-167.
36. Vishniac, W. & Santer, M. (1957). The Thiobacilli. Bacteriol Rev 21, 195-213.
37. Wagner, M. & Amann, R. (1997). Molecular techniques for determining microbial community structures in activated sludge. In Microbial Community Analysis: the Key to the Design of Bacterial Wastewater Treatment Systems, pp. 61-72. IAWQ Scientific Technical Report no. 5. Edited by T. E. Cloete & N. Y. O. Muyima. Cambridge: Cambridge University Press.
38. Wagner, M. & Loy, A. (2002). Bacterial community composition and function in sewage treatment systems. Curr Opin Biotechnol 13, 218-227.
39. Wagner, M., Amann, R., Lemmer, H. & Schleifer, K.-H. (1993). Probing activated sludge with oligonucleotides specific for Proteobacteria: inadequacy of culture-dependent methods for describing microbial community structure. Appl Environ Microbiol 59, 1520-1525.
40. Wagner, M., Amann, R., Kämpfer, P., Assmus, B., Hartmann, A., Hutzler, P., Springer, N. & Schleifer, K.-H. (1994a). Identification and in situ detection of gram-negative filamentous bacteria in activated sludge. Syst Appl Microbiol 17, 405-417.
41. Wagner, M., Erhart, R., Manz, W., Amann, R., Lemmer, H., Wedi, D. & Schleifer, K. H. (1994b). Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge. Appl Environ Microbiol 60, 792-800.
42. Wallner, G., Erhart, R. & Amann, R. (1995). Flow cytometric analysis of activated sludge with rRNA-targeted probes. Appl Environ Microbiol 61, 1859-1866.
43. Wolin, E. A., Wolin, M. J. & Wolfe, R. S. (1963). Formation of methane by bacterial extracts. J Biol Chem 238, 2882-2886.
44. Yokota, A., Akagawa-Matsushita, M., Hiraishi, A., Katayama, Y., Urakami, T. & Yamasato, K. (1992). Distribution of quinone systems in microorganisms: Gram-negative eubacteria. Bull Jpn Fed Cult Coll 8, 136-171.