-
2
-
-
77950545445
-
STEPS: Modeling and Simulating Complex Reaction-Diffusion Systems with Python
-
Wils S, De Schutter E, (2009) STEPS: Modeling and Simulating Complex Reaction-Diffusion Systems with Python. Front Neuroinformatics 3: 15.
-
(2009)
Front Neuroinformatics
, vol.3
, pp. 15
-
-
Wils, S.1
De Schutter, E.2
-
3
-
-
77955447696
-
Rapid desynchronization of an electrically coupled interneuron network with sparse excitatory synaptic input
-
Vervaeke K, Lorincz A, Gleeson P, Farinella M, Nusser Z, et al. (2010) Rapid desynchronization of an electrically coupled interneuron network with sparse excitatory synaptic input. Neuron 67: 435-51.
-
(2010)
Neuron
, vol.67
, pp. 435-451
-
-
Vervaeke, K.1
Lorincz, A.2
Gleeson, P.3
Farinella, M.4
Nusser, Z.5
-
4
-
-
31444442519
-
The blue brain project
-
Markram H, (2006) The blue brain project. Nat Rev Neurosci 7: 153-60.
-
(2006)
Nat Rev Neurosci
, vol.7
, pp. 153-160
-
-
Markram, H.1
-
5
-
-
40749088917
-
Lapicque's 1907 paper: from frogs to integrate-and-fire
-
Brunel N, van Rossum M, (2007) Lapicque's 1907 paper: from frogs to integrate-and-fire. Biol Cybern 97: 337-9.
-
(2007)
Biol Cybern
, vol.97
, pp. 337-339
-
-
Brunel, N.1
van Rossum, M.2
-
6
-
-
0742268989
-
Simple model of spiking neurons
-
Izhikevich E, (2003) Simple model of spiking neurons. IEEE Trans Neural Netw 14: 1569-72.
-
(2003)
IEEE Trans Neural Netw
, vol.14
, pp. 1569-1572
-
-
Izhikevich, E.1
-
7
-
-
5344241223
-
LTP and LTD: an embarrassment of riches
-
Malenka R, Bear M, (2004) LTP and LTD: an embarrassment of riches. Neuron 44: 5-21.
-
(2004)
Neuron
, vol.44
, pp. 5-21
-
-
Malenka, R.1
Bear, M.2
-
8
-
-
36549075574
-
Synaptic plasticity: multiple forms, functions, and mechanisms
-
Citri A, Malenka R, (2008) Synaptic plasticity: multiple forms, functions, and mechanisms. Neuropsychopharmacology 33: 18-41.
-
(2008)
Neuropsychopharmacology
, vol.33
, pp. 18-41
-
-
Citri, A.1
Malenka, R.2
-
9
-
-
78650965110
-
The dendritic branch is the preferred integrative unit for protein synthesis-dependent LTP
-
Govindarajan A, Israely I, Huang S, Tonegawa S, (2011) The dendritic branch is the preferred integrative unit for protein synthesis-dependent LTP. Neuron 69: 132-46.
-
(2011)
Neuron
, vol.69
, pp. 132-146
-
-
Govindarajan, A.1
Israely, I.2
Huang, S.3
Tonegawa, S.4
-
10
-
-
77949798185
-
Modelling the molecular mechanisms of synaptic plasticity using systems biology approaches
-
Kotaleski J, Blackwell K, (2010) Modelling the molecular mechanisms of synaptic plasticity using systems biology approaches. Nat Rev Neurosci 11: 239-51.
-
(2010)
Nat Rev Neurosci
, vol.11
, pp. 239-251
-
-
Kotaleski, J.1
Blackwell, K.2
-
11
-
-
33947680868
-
Model storage, exchange and integration
-
Le Novère N, (2006) Model storage, exchange and integration. BMC Neurosci 7Suppl 1: S11.
-
(2006)
BMC Neurosci
, vol.7
-
-
Le Novère, N.1
-
12
-
-
34249891460
-
Sbmlmerge, a system for combining biochemical network models
-
Schulz M, Uhlendorf J, Klipp E, Liebermeister W, (2006) Sbmlmerge, a system for combining biochemical network models. Genome Inform 17: 62-71.
-
(2006)
Genome Inform
, vol.17
, pp. 62-71
-
-
Schulz, M.1
Uhlendorf, J.2
Klipp, E.3
Liebermeister, W.4
-
14
-
-
3042554012
-
Structural basis of long-term potentiation in single dendritic spines
-
Matsuzaki M, Honkura N, Ellis-Davies G, Kasai H, (2004) Structural basis of long-term potentiation in single dendritic spines. Nature 429: 761-6.
-
(2004)
Nature
, vol.429
, pp. 761-766
-
-
Matsuzaki, M.1
Honkura, N.2
Ellis-Davies, G.3
Kasai, H.4
-
15
-
-
33644502605
-
State-dependent dendritic computation in hippocampal CA1 Pyramidal neurons
-
Hybrid neuronal simulation 28
-
Gasparini S, Magee J (2006) State-dependent dendritic computation in hippocampal CA1 Pyramidal neurons. J Neurosci 26: 2088-100. Hybrid neuronal simulation 28.
-
(2006)
J Neurosci
, vol.26
, pp. 100-2088
-
-
Gasparini, S.1
Magee, J.2
-
17
-
-
46849102728
-
The spread of Ras activity triggered by activation of a single dendritic spine
-
Harvey C, Yasuda R, Zhong H, Svoboda K, (2008) The spread of Ras activity triggered by activation of a single dendritic spine. Science 321: 136-40.
-
(2008)
Science
, vol.321
, pp. 136-140
-
-
Harvey, C.1
Yasuda, R.2
Zhong, H.3
Svoboda, K.4
-
18
-
-
79955671818
-
Spatiotemporal regulation of signaling in and out of dendritic spines: CaMKII and Ras
-
Lee S, Yasuda R, (2009) Spatiotemporal regulation of signaling in and out of dendritic spines: CaMKII and Ras. Open Neurosci J 3: 117-127.
-
(2009)
Open Neurosci J
, vol.3
, pp. 117-127
-
-
Lee, S.1
Yasuda, R.2
-
19
-
-
31544462618
-
Supersensitive Ras activation in dendrites and spines revealed by two-photon uorescence lifetime imaging
-
Yasuda R, Harvey C, Zhong H, Sobczyk A, van Aelst L, et al. (2006) Supersensitive Ras activation in dendrites and spines revealed by two-photon uorescence lifetime imaging. Nat Neurosci 9: 283-91.
-
(2006)
Nat Neurosci
, vol.9
, pp. 283-291
-
-
Yasuda, R.1
Harvey, C.2
Zhong, H.3
Sobczyk, A.4
van Aelst, L.5
-
20
-
-
34248676296
-
Performance analysis of MPI collective operations
-
Pješivac-Grbović J, Angskun T, Bosilca G, Fagg GE, Gabriel E, et al. (2007) Performance analysis of MPI collective operations. Cluster Computing 10: 127-143.
-
(2007)
Cluster Computing
, vol.10
, pp. 127-143
-
-
Pješivac-Grbović, J.1
Angskun, T.2
Bosilca, G.3
Fagg, G.E.4
Gabriel, E.5
-
21
-
-
35048884271
-
Open MPI: Goals, concept, and design of a next generation MPI implementation
-
Budapest, Hungary
-
Gabriel E, Fagg GE, Bosilca G, Angskun T, Dongarra JJ, et al. (2004) Open MPI: Goals, concept, and design of a next generation MPI implementation. In: Proceedings, 11th European PVM/MPI Users' Group Meeting. Budapest, Hungary, 97-104.
-
(2004)
Proceedings, 11th European PVM/MPI Users' Group Meeting
, pp. 97-104
-
-
Gabriel, E.1
Fagg, G.E.2
Bosilca, G.3
Angskun, T.4
Dongarra, J.J.5
-
22
-
-
84856215948
-
Tunnel structure analysis using the multi-scale modeling method
-
Cao Y, Wang P, Jin X, Wang J, Yang Y, (2012) Tunnel structure analysis using the multi-scale modeling method. Tunnelling and Underground Space Technology 28: 124-134.
-
(2012)
Tunnelling and Underground Space Technology
, vol.28
, pp. 124-134
-
-
Cao, Y.1
Wang, P.2
Jin, X.3
Wang, J.4
Yang, Y.5
-
23
-
-
67651205045
-
Exploratory simulation of cell ageing using hierarchical models
-
Cvijovic M, Soueidan H, Sherman D, Klipp E, Nikolski M, (2008) Exploratory simulation of cell ageing using hierarchical models. Genome Inform 21: 114-25.
-
(2008)
Genome Inform
, vol.21
, pp. 114-125
-
-
Cvijovic, M.1
Soueidan, H.2
Sherman, D.3
Klipp, E.4
Nikolski, M.5
-
24
-
-
63049135320
-
Bursting Activation of Prefrontal Cortex drives sustained up states in Nucleus Accumbens Spiny Neurons in vivo
-
Gruber A, O'Donnell P, (2009) Bursting Activation of Prefrontal Cortex drives sustained up states in Nucleus Accumbens Spiny Neurons in vivo. Synapse 63: 173-80.
-
(2009)
Synapse
, vol.63
, pp. 173-180
-
-
Gruber, A.1
O'Donnell, P.2
-
25
-
-
77957674340
-
AMPA receptors gate spine Ca(2+) transients and spike-timing-dependent potentiation
-
Holbro N, Grunditz A, Wiegert J, Oertner T, (2010) AMPA receptors gate spine Ca(2+) transients and spike-timing-dependent potentiation. Proc Natl Acad Sci U S A 107: 15975-80.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 15975-15980
-
-
Holbro, N.1
Grunditz, A.2
Wiegert, J.3
Oertner, T.4
-
26
-
-
34547630913
-
Sodium channels amplify spine potentials
-
Araya R, Nikolenko V, Eisenthal K, Yuste R, (2007) Sodium channels amplify spine potentials. Proc Natl Acad Sci U S A 104: 12347-52.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 12347-12352
-
-
Araya, R.1
Nikolenko, V.2
Eisenthal, K.3
Yuste, R.4
-
27
-
-
33845483432
-
Dendritic spines linearize the summation of excitatory potentials
-
Araya R, Eisenthal K, Yuste R, (2006) Dendritic spines linearize the summation of excitatory potentials. Proc Natl Acad Sci U S A 103: 18799-804.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 18799-18804
-
-
Araya, R.1
Eisenthal, K.2
Yuste, R.3
-
28
-
-
33845195768
-
The spine neck filters membrane potentials
-
Araya R, Jiang J, Eisenthal K, Yuste R, (2006) The spine neck filters membrane potentials. Proc Natl Acad Sci U S A 103: 17961-6.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 17961-17966
-
-
Araya, R.1
Jiang, J.2
Eisenthal, K.3
Yuste, R.4
-
29
-
-
54049127490
-
Ultrastructure of dendritic spines: correlation between synaptic and spine morphologies
-
Arellano J, Benavides-Piccione R, Defelipe J, Yuste R, (2007) Ultrastructure of dendritic spines: correlation between synaptic and spine morphologies. Front Neurosci 1: 131-43.
-
(2007)
Front Neurosci
, vol.1
, pp. 131-143
-
-
Arellano, J.1
Benavides-Piccione, R.2
Defelipe, J.3
Yuste, R.4
-
30
-
-
66149185306
-
Membrane potential changes in dendritic spines during action potentials and synaptic input
-
Palmer L, Stuart G, (2009) Membrane potential changes in dendritic spines during action potentials and synaptic input. J Neurosci 29: 6897-903.
-
(2009)
J Neurosci
, vol.29
, pp. 6897-6903
-
-
Palmer, L.1
Stuart, G.2
-
31
-
-
58149390817
-
Spine neck plasticity controls postsynaptic Calcium signals through electrical compartmentalization
-
Grunditz A, Holbro N, Tian L, Zuo Y, Oertner T, (2008) Spine neck plasticity controls postsynaptic Calcium signals through electrical compartmentalization. J Neurosci 28: 13457-66.
-
(2008)
J Neurosci
, vol.28
, pp. 13457-13466
-
-
Grunditz, A.1
Holbro, N.2
Tian, L.3
Zuo, Y.4
Oertner, T.5
-
32
-
-
0031024891
-
Synaptic tagging and long-term potentiation
-
Frey U, Morris R, (1997) Synaptic tagging and long-term potentiation. Nature 385: 533-6.
-
(1997)
Nature
, vol.385
, pp. 533-536
-
-
Frey, U.1
Morris, R.2
-
33
-
-
45149123279
-
Real world turbulence and modern applied mathematics
-
American Mathematical Society
-
Majda AJ (2000) Real world turbulence and modern applied mathematics. Mathematics: Frontiers and Perspectives. American Mathematical Society.
-
(2000)
Mathematics: Frontiers and Perspectives
-
-
Majda, A.J.1
-
34
-
-
79952582249
-
Quantum mechanics/molecular mechanics strategies for docking pose refinement: distinguishing between binders and decoys in cytochrome C peroxidase
-
Burger S, Thompson D, Ayers P, (2011) Quantum mechanics/molecular mechanics strategies for docking pose refinement: distinguishing between binders and decoys in cytochrome C peroxidase. J Chem Inf Model 51: 93-101.
-
(2011)
J Chem Inf Model
, vol.51
, pp. 93-101
-
-
Burger, S.1
Thompson, D.2
Ayers, P.3
-
35
-
-
70350588995
-
Chaste: A test-driven approach to software development for biological modelling
-
Pitt-Francis J, Pathmanathan P, Bernabeu MO, Bordas R, Cooper J, et al. (2009) Chaste: A test-driven approach to software development for biological modelling. Computer Physics Communications 180: 2452-2471.
-
(2009)
Computer Physics Communications
, vol.180
, pp. 2452-2471
-
-
Pitt-Francis, J.1
Pathmanathan, P.2
Bernabeu, M.O.3
Bordas, R.4
Cooper, J.5
-
36
-
-
2542507229
-
Classification and analysis of integrating frameworks in multiscale modelling
-
Ingram G, Cameron I, Hangos K, (2004) Classification and analysis of integrating frameworks in multiscale modelling. Chemical Engineering Science 59: 2171-2187.
-
(2004)
Chemical Engineering Science
, vol.59
, pp. 2171-2187
-
-
Ingram, G.1
Cameron, I.2
Hangos, K.3
-
37
-
-
77949823666
-
PyMOOSE: Interoperable scripting in python for MOOSE
-
Ray S, Bhalla U, (2008) PyMOOSE: Interoperable scripting in python for MOOSE. Front Neuroinformatics 2: 2-6.
-
(2008)
Front Neuroinformatics
, vol.2
, pp. 2-6
-
-
Ray, S.1
Bhalla, U.2
-
38
-
-
84864258618
-
A whole-cell computational model predicts phenotype from genotype
-
Karr J, Sanghvi J, Macklin D, Gutschow M, Jacobs J, et al. (2012) A whole-cell computational model predicts phenotype from genotype. Cell 150: 389-401.
-
(2012)
Cell
, vol.150
, pp. 389-401
-
-
Karr, J.1
Sanghvi, J.2
Macklin, D.3
Gutschow, M.4
Jacobs, J.5
-
39
-
-
70049102913
-
MUSIC multisimulation coordinator: Request for comments
-
Ekeberg Ö, Djurfeldt M (2008) MUSIC multisimulation coordinator: Request for comments. Nat Preced.
-
(2008)
Nat Preced
-
-
Ekeberg, Ö.1
Djurfeldt, M.2
-
41
-
-
43949092150
-
NEST (neural simulation tool)
-
Gewaltig M, Diesmann M, (2007) NEST (neural simulation tool). Scholarpedia 2: 1430.
-
(2007)
Scholarpedia
, vol.2
, pp. 1430
-
-
Gewaltig, M.1
Diesmann, M.2
-
42
-
-
77953106373
-
Run-time interoperability between neuronal network simulators based on the MUSIC framework
-
Djurfeldt M, Hjorth J, Eppler J, Dudani N, Helias M, et al. (2010) Run-time interoperability between neuronal network simulators based on the MUSIC framework. Neuroinformatics 8: 43-60.
-
(2010)
Neuroinformatics
, vol.8
, pp. 43-60
-
-
Djurfeldt, M.1
Hjorth, J.2
Eppler, J.3
Dudani, N.4
Helias, M.5
-
44
-
-
1542400036
-
A multi-algorithm, multi-timescale method for cell simulation
-
Takahashi K, Kaizu K, Hu B, Tomita M, (2004) A multi-algorithm, multi-timescale method for cell simulation. Bioinformatics 20: 538-46.
-
(2004)
Bioinformatics
, vol.20
, pp. 538-546
-
-
Takahashi, K.1
Kaizu, K.2
Hu, B.3
Tomita, M.4
-
46
-
-
34247480145
-
D1 and D2 dopamine-receptor modulation of striatal glutamatergic signaling in striatal medium spiny neurons
-
Surmeier D, Ding J, Day M, Wang Z, Shen W, (2007) D1 and D2 dopamine-receptor modulation of striatal glutamatergic signaling in striatal medium spiny neurons. Trends Neurosci 30: 228-35.
-
(2007)
Trends Neurosci
, vol.30
, pp. 228-235
-
-
Surmeier, D.1
Ding, J.2
Day, M.3
Wang, Z.4
Shen, W.5
-
48
-
-
27144432080
-
NMDA/AMPA ratio impacts state transitions and entrainment to oscillations in a computational model of the nucleus accumbens medium spiny projection neuron
-
Wolf J, Moyer J, Lazarewicz M, Contreras D, Benoit-Marand M, et al. (2005) NMDA/AMPA ratio impacts state transitions and entrainment to oscillations in a computational model of the nucleus accumbens medium spiny projection neuron. J Neurosci 25: 9080-95.
-
(2005)
J Neurosci
, vol.25
, pp. 9080-9095
-
-
Wolf, J.1
Moyer, J.2
Lazarewicz, M.3
Contreras, D.4
Benoit-Marand, M.5
-
49
-
-
58149215546
-
Differential excitability and modulation of striatal medium spiny neuron dendrites
-
Day M, Wokosin D, Plotkin J, Tian X, Surmeier D, (2008) Differential excitability and modulation of striatal medium spiny neuron dendrites. J Neurosci 28: 11603-14.
-
(2008)
J Neurosci
, vol.28
, pp. 11603-11614
-
-
Day, M.1
Wokosin, D.2
Plotkin, J.3
Tian, X.4
Surmeier, D.5
-
50
-
-
31544465246
-
Selective elimination of glutamatergic synapses on striatopallidal neurons in parkinson disease models
-
Day M, Wang Z, Ding J, An X, Ingham C, et al. (2006) Selective elimination of glutamatergic synapses on striatopallidal neurons in parkinson disease models. Nat Neurosci 9: 251-9.
-
(2006)
Nat Neurosci
, vol.9
, pp. 251-259
-
-
Day, M.1
Wang, Z.2
Ding, J.3
An, X.4
Ingham, C.5
-
51
-
-
77955391354
-
The role of dopamine in modulating the structure and function of striatal circuits
-
Surmeier D, Shen W, Day M, Gertler T, Chan S, et al. (2010) The role of dopamine in modulating the structure and function of striatal circuits. Prog Brain Res 183: 149-67.
-
(2010)
Prog Brain Res
, vol.183
, pp. 149-167
-
-
Surmeier, D.1
Shen, W.2
Day, M.3
Gertler, T.4
Chan, S.5
-
53
-
-
4143123132
-
Developing complex signaling models using GENESIS/Kinetikit
-
Vayttaden S, Bhalla U, (2004) Developing complex signaling models using GENESIS/Kinetikit. Sci STKE 2004: pl4.
-
(2004)
Sci STKE
, vol.2004
-
-
Vayttaden, S.1
Bhalla, U.2
-
55
-
-
33845368513
-
COPASI-a COmplex PAthway SImulator
-
Hoops S, Sahle S, Gauges R, Lee C, Pahle J, et al. (2006) COPASI-a COmplex PAthway SImulator. Bioinformatics 22: 3067-74.
-
(2006)
Bioinformatics
, vol.22
, pp. 3067-3074
-
-
Hoops, S.1
Sahle, S.2
Gauges, R.3
Lee, C.4
Pahle, J.5
-
56
-
-
33745631242
-
The SBML ODE solver library: a native API for symbolic and fast numerical analysis of reaction networks
-
Machné R, Finney A, Muller S, Lu J, Widder S, et al. (2006) The SBML ODE solver library: a native API for symbolic and fast numerical analysis of reaction networks. Bioinformatics 22: 1406-7.
-
(2006)
Bioinformatics
, vol.22
, pp. 1406-1407
-
-
Machné, R.1
Finney, A.2
Muller, S.3
Lu, J.4
Widder, S.5
-
58
-
-
50249109475
-
Automated quantification of dendritic spine density and spine head diameter in medium spiny neurons of the nucleus accumbens
-
Shen H, Sesack S, Toda S, Kalivas P, (2008) Automated quantification of dendritic spine density and spine head diameter in medium spiny neurons of the nucleus accumbens. Brain Struct Funct 213: 149-57.
-
(2008)
Brain Struct Funct
, vol.213
, pp. 149-157
-
-
Shen, H.1
Sesack, S.2
Toda, S.3
Kalivas, P.4
-
59
-
-
58149214025
-
Dynamic microtubules regulate dendritic spine morphology and synaptic plasticity
-
Jaworski J, Kapitein L, Gouveia S, Dortland B, Wulf P, et al. (2009) Dynamic microtubules regulate dendritic spine morphology and synaptic plasticity. Neuron 61: 85-100.
-
(2009)
Neuron
, vol.61
, pp. 85-100
-
-
Jaworski, J.1
Kapitein, L.2
Gouveia, S.3
Dortland, B.4
Wulf, P.5
-
60
-
-
42149192537
-
Large-scale model of mammalian thalamocortical systems
-
Izhikevich E, Edelman G, (2008) Large-scale model of mammalian thalamocortical systems. Proc Natl Acad Sci U S A 105: 3593-8.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 3593-3598
-
-
Izhikevich, E.1
Edelman, G.2
-
61
-
-
37549003263
-
Effects of Dopaminergic Modulation on the Integrative Properties of the Ventral Striatal Medium Spiny Neuron
-
Moyer J, Wolf J, Finkel L, (2007) Effects of Dopaminergic Modulation on the Integrative Properties of the Ventral Striatal Medium Spiny Neuron. J Neurophysiol 98: 3731-48.
-
(2007)
J Neurophysiol
, vol.98
, pp. 3731-3748
-
-
Moyer, J.1
Wolf, J.2
Finkel, L.3
-
62
-
-
70349779369
-
Biphasic synaptic Ca inux arising from compartmentalized electrical signals in dendritic spines
-
Bloodgood B, Giessel A, Sabatini B, (2009) Biphasic synaptic Ca inux arising from compartmentalized electrical signals in dendritic spines. PLoS Biol 7: e1000190.
-
(2009)
PLoS Biol
, vol.7
-
-
Bloodgood, B.1
Giessel, A.2
Sabatini, B.3
-
64
-
-
0000346496
-
Dendritic morphology, inward rectification, and the functional properties of neostriatal neurons
-
Wilson JC (1992) Dendritic morphology, inward rectification, and the functional properties of neostriatal neurons. Single neuron computation: 141-171.
-
(1992)
Single neuron computation
, pp. 141-171
-
-
Wilson, J.C.1
-
65
-
-
68449103579
-
The Systems Biology Graphical Notation
-
Le Novère N, Hucka M, Mi H, Moodie S, Schreiber F, et al. (2009) The Systems Biology Graphical Notation. Nat Biotechnol 27: 735-41.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 735-741
-
-
Le Novère, N.1
Hucka, M.2
Mi, H.3
Moodie, S.4
Schreiber, F.5
-
66
-
-
49449096617
-
An allosteric model of Calmodulin explains differential activation of PP2B and CaMKII
-
Stefan M, Edelstein S, Le Novère N, (2008) An allosteric model of Calmodulin explains differential activation of PP2B and CaMKII. Proc Natl Acad Sci U S A 105: 10768-73.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 10768-10773
-
-
Stefan, M.1
Edelstein, S.2
Le Novère, N.3
-
67
-
-
84866014682
-
Calcium input frequency, duration and amplitude differentially modulate the relative activation of calcineurin and camkii
-
Li L, Stefan MI, Le Novère N, (2012) Calcium input frequency, duration and amplitude differentially modulate the relative activation of calcineurin and camkii. PLoS One 7: e43810.
-
(2012)
PLoS One
, vol.7
-
-
Li, L.1
Stefan, M.I.2
Le Novère, N.3
-
68
-
-
33749370872
-
Molecular switches at the synapse emerge from receptor and kinase trafic
-
Hayer A, Bhalla U, (2005) Molecular switches at the synapse emerge from receptor and kinase trafic. PLoS Comput Biol 1: 137-54.
-
(2005)
PLoS Comput Biol
, vol.1
, pp. 137-154
-
-
Hayer, A.1
Bhalla, U.2
-
69
-
-
0034518423
-
Structure and regulation of voltage-gated Ca2+ channels
-
Catterall W, (2000) Structure and regulation of voltage-gated Ca2+ channels. Annu Rev Cell Dev Biol 16: 521-55.
-
(2000)
Annu Rev Cell Dev Biol
, vol.16
, pp. 521-555
-
-
Catterall, W.1
-
70
-
-
7044220658
-
State-dependent Calcium signaling in dendritic spines of striatal medium spiny neurons
-
Carter A, Sabatini B, (2004) State-dependent Calcium signaling in dendritic spines of striatal medium spiny neurons. Neuron 44: 483-93.
-
(2004)
Neuron
, vol.44
, pp. 483-493
-
-
Carter, A.1
Sabatini, B.2
-
71
-
-
59649114125
-
Synaptic AMPA receptor plasticity and behavior
-
Kessels H, Malinow R, (2009) Synaptic AMPA receptor plasticity and behavior. Neuron 61: 340-50.
-
(2009)
Neuron
, vol.61
, pp. 340-350
-
-
Kessels, H.1
Malinow, R.2
-
72
-
-
0036305484
-
AMPA receptor trafficking and synaptic plasticity
-
Malinow R, Malenka R, (2002) AMPA receptor trafficking and synaptic plasticity. Annu Rev Neurosci 25: 103-26.
-
(2002)
Annu Rev Neurosci
, vol.25
, pp. 103-126
-
-
Malinow, R.1
Malenka, R.2
-
73
-
-
77951888099
-
Brownian diffusion of AMPA receptors is sufficient to explain fast onset of LTP
-
Tolle D, Le Novère N, (2010) Brownian diffusion of AMPA receptors is sufficient to explain fast onset of LTP. BMC Syst Biol 4: 25.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 25
-
-
Tolle, D.1
Le Novère, N.2
-
74
-
-
73949117548
-
PIP3 controls synaptic function by maintaining AMPA receptor clustering at the postsynaptic membrane
-
Arendt K, Royo M, Fernández-Monreal M, Knafo S, Petrok C, et al. (2010) PIP3 controls synaptic function by maintaining AMPA receptor clustering at the postsynaptic membrane. Nat Neurosci 13: 36-44.
-
(2010)
Nat Neurosci
, vol.13
, pp. 36-44
-
-
Arendt, K.1
Royo, M.2
Fernández-Monreal, M.3
Knafo, S.4
Petrok, C.5
-
75
-
-
0027443835
-
Ionic mechanisms for intrinsic slow oscillations in thalamic relay neurons
-
Destexhe A, Babloyantz A, Sejnowski T, (1993) Ionic mechanisms for intrinsic slow oscillations in thalamic relay neurons. Biophys J 65: 1538-52.
-
(1993)
Biophys J
, vol.65
, pp. 1538-1552
-
-
Destexhe, A.1
Babloyantz, A.2
Sejnowski, T.3
-
76
-
-
0037338322
-
Calcium dynamics, buffering, and buffer saturation in the boutons of dentate granule-cell axons in the hilus
-
Hybrid neuronal simulation 33
-
Jackson M, Redman S (2003) Calcium dynamics, buffering, and buffer saturation in the boutons of dentate granule-cell axons in the hilus. J Neurosci 23: 1612-21. Hybrid neuronal simulation 33.
-
(2003)
J Neurosci
, vol.23
, pp. 1612-1621
-
-
Jackson, M.1
Redman, S.2
-
77
-
-
84864222718
-
Automated capture of experiment context for easier reproducibility in computational research
-
Davison A, (2012) Automated capture of experiment context for easier reproducibility in computational research. Computing in Science and Engineering 14: 48-56.
-
(2012)
Computing in Science and Engineering
, vol.14
, pp. 48-56
-
-
Davison, A.1
-
79
-
-
0031780887
-
Competitive calcium binding: implications for dendritic calcium signaling
-
Markram H, Roth A, Helmchen F, (1998) Competitive calcium binding: implications for dendritic calcium signaling. J Comput Neurosci 5: 331-48.
-
(1998)
J Comput Neurosci
, vol.5
, pp. 331-348
-
-
Markram, H.1
Roth, A.2
Helmchen, F.3
-
80
-
-
2442657937
-
Ca2+/calmodulin-dependent activation and inactivation mechanisms of alphaCaMKII and phospho-Thr286-alphaCaMKII
-
Tzortzopoulos A, Best S, Kalamida D, Torok K, (2004) Ca2+/calmodulin-dependent activation and inactivation mechanisms of alphaCaMKII and phospho-Thr286-alphaCaMKII. Biochemistry 43: 6270-80.
-
(2004)
Biochemistry
, vol.43
, pp. 6270-6280
-
-
Tzortzopoulos, A.1
Best, S.2
Kalamida, D.3
Torok, K.4
-
81
-
-
0026718175
-
Calmodulin trapping by calcium-calmodulindependent protein kinase
-
Meyer T, Hanson P, Stryer L, Schulman H, (1992) Calmodulin trapping by calcium-calmodulindependent protein kinase. Science 256: 1199-202.
-
(1992)
Science
, vol.256
, pp. 1199-1202
-
-
Meyer, T.1
Hanson, P.2
Stryer, L.3
Schulman, H.4
-
82
-
-
22144454985
-
Kinetics of Calmodulin binding to Calcineurin
-
Quintana A, Wang D, Forbes J, Waxham M, (2005) Kinetics of Calmodulin binding to Calcineurin. Biochem Biophys Res Commun 334: 674-80.
-
(2005)
Biochem Biophys Res Commun
, vol.334
, pp. 674-680
-
-
Quintana, A.1
Wang, D.2
Forbes, J.3
Waxham, M.4
-
83
-
-
0036373887
-
Substrate selectivity and sensitivity to inhibition by FK506 and Cyclosporin A of Calcineurin heterodimers composed of the alpha or beta catalytic subunit
-
Perrino B, Wilson A, Ellison P, Clapp L, (2002) Substrate selectivity and sensitivity to inhibition by FK506 and Cyclosporin A of Calcineurin heterodimers composed of the alpha or beta catalytic subunit. Eur J Biochem 269: 3540-8.
-
(2002)
Eur J Biochem
, vol.269
, pp. 3540-3548
-
-
Perrino, B.1
Wilson, A.2
Ellison, P.3
Clapp, L.4
-
84
-
-
55349126039
-
Detailed state model of CaMKII activation and autophosphorylation
-
Lucić V, Greif G, Kennedy M, (2008) Detailed state model of CaMKII activation and autophosphorylation. Eur Biophys J 38: 83-98.
-
(2008)
Eur Biophys J
, vol.38
, pp. 83-98
-
-
Lucić, V.1
Greif, G.2
Kennedy, M.3
-
85
-
-
0021714011
-
DARPP-32, a dopamine- and adenosine 3′:5′- monophosphate-regulated neuronal phosphoprotein. II. Comparison of the kinetics of phosphorylation of DARPP-32 and phosphatase inhibitor 1
-
Hemmings H Jr, Nairn A, Greengard P, (1984) DARPP-32, a dopamine- and adenosine 3′:5′- monophosphate-regulated neuronal phosphoprotein. II. Comparison of the kinetics of phosphorylation of DARPP-32 and phosphatase inhibitor 1. J Biol Chem 259: 14491-7.
-
(1984)
J Biol Chem
, vol.259
, pp. 14491-14497
-
-
Hemmings Jr., H.1
Nairn, A.2
Greengard, P.3
-
86
-
-
0021267630
-
Mammalian brain phosphoproteins as substrates for Calcineurin
-
King M, Huang C, Chock P, Nairn A, Hemmings H Jr, et al. (1984) Mammalian brain phosphoproteins as substrates for Calcineurin. J Biol Chem 259: 8080-3.
-
(1984)
J Biol Chem
, vol.259
, pp. 8080-8083
-
-
King, M.1
Huang, C.2
Chock, P.3
Nairn, A.4
Hemmings Jr., H.5
-
87
-
-
0028899611
-
Mechanism of inhibition of protein phosphatase 1 by DARPP-32: studies with recombinant DARPP-32 and synthetic peptides
-
Desdouits F, Cheetham J, Huang H, Kwon Y, da Cruz e Silva E, et al. (1995) Mechanism of inhibition of protein phosphatase 1 by DARPP-32: studies with recombinant DARPP-32 and synthetic peptides. Biochem Biophys Res Commun 206: 652-8.
-
(1995)
Biochem Biophys Res Commun
, vol.206
, pp. 652-658
-
-
Desdouits, F.1
Cheetham, J.2
Huang, H.3
Kwon, Y.4
da Cruz e Silva, E.5
-
89
-
-
0033748154
-
Bistability in the Ca(2+)/calmodulin-dependent protein kinase-phosphatase system
-
Zhabotinsky A, (2000) Bistability in the Ca(2+)/calmodulin-dependent protein kinase-phosphatase system. Biophys J 79: 2211-21.
-
(2000)
Biophys J
, vol.79
, pp. 2211-2221
-
-
Zhabotinsky, A.1
-
90
-
-
34447625042
-
The sequence of events that underlie quantal transmission at central glutamatergic synapses
-
Lisman J, Raghavachari S, Tsien R, (2007) The sequence of events that underlie quantal transmission at central glutamatergic synapses. Nat Rev Neurosci 8: 597-609.
-
(2007)
Nat Rev Neurosci
, vol.8
, pp. 597-609
-
-
Lisman, J.1
Raghavachari, S.2
Tsien, R.3
-
91
-
-
0027058138
-
Range of messenger action of calcium ion and inositol 1,4,5-trisphosphate
-
Allbritton N, Meyer T, Stryer L, (1992) Range of messenger action of calcium ion and inositol 1,4,5-trisphosphate. Science 258: 1812-5.
-
(1992)
Science
, vol.258
, pp. 1812-1815
-
-
Allbritton, N.1
Meyer, T.2
Stryer, L.3
-
92
-
-
0348010289
-
Distribution of postsynaptic density (psd)-95 and ca2+/calmodulin-dependent protein kinase II at the PSD
-
Petersen J, Chen X, Vinade L, Dosemeci A, Lisman J, et al. (2003) Distribution of postsynaptic density (psd)-95 and ca2+/calmodulin-dependent protein kinase II at the PSD. J Neurosci 23: 11270-8.
-
(2003)
J Neurosci
, vol.23
, pp. 11270-11278
-
-
Petersen, J.1
Chen, X.2
Vinade, L.3
Dosemeci, A.4
Lisman, J.5
-
93
-
-
0027246341
-
Spatially resolved dynamics of cAMP and protein kinase a subunits in aplysia sensory neurons
-
Bacskai B, Hochner B, Mahaut-Smith M, Adams S, Kaang B, et al. (1993) Spatially resolved dynamics of cAMP and protein kinase a subunits in aplysia sensory neurons. Science 260: 222-6.
-
(1993)
Science
, vol.260
, pp. 222-226
-
-
Bacskai, B.1
Hochner, B.2
Mahaut-Smith, M.3
Adams, S.4
Kaang, B.5
-
94
-
-
0020641117
-
The protein phosphatases involved in cellular regulation. 6. measurement of type-1 and type-2 protein phosphatases in extracts of mammalian tissues; an assessment of their physiological roles
-
Ingebritsen T, Stewart A, Cohen P, (1983) The protein phosphatases involved in cellular regulation. 6. measurement of type-1 and type-2 protein phosphatases in extracts of mammalian tissues; an assessment of their physiological roles. Eur J Biochem 132: 297-307.
-
(1983)
Eur J Biochem
, vol.132
, pp. 297-307
-
-
Ingebritsen, T.1
Stewart, A.2
Cohen, P.3
-
95
-
-
0023032057
-
The distribution of calcineurin in rat brain by light and electron microscopic immunohistochemistry and enzyme-immunoassay.Brain Res
-
Goto S, Matsukado Y, Mihara Y, Inoue N, Miyamoto E, (1986) The distribution of calcineurin in rat brain by light and electron microscopic immunohistochemistry and enzyme-immunoassay.Brain Res. 397: 161-72.
-
(1986)
, vol.397
, pp. 161-172
-
-
Goto, S.1
Matsukado, Y.2
Mihara, Y.3
Inoue, N.4
Miyamoto, E.5
|