메뉴 건너뛰기




Volumn 156, Issue 11, 2011, Pages 1953-1959

The possible molecular evolution of sapoviruses by inter- and intra-genogroup recombination

Author keywords

Calicivirus; Inter genogroup recombination; RdRp CP junction site

Indexed keywords

ARTICLE; CALICIVIRUS INFECTION; CLASSIFICATION; GASTROENTERITIS; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENETICS; GENOTYPE; HUMAN; ISOLATION AND PURIFICATION; MALE; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYSIOLOGY; PRESCHOOL CHILD; SAPOVIRUS; VIROLOGY;

EID: 80255138212     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-011-1079-8     Document Type: Article
Times cited : (11)

References (36)
  • 1
    • 34250757252 scopus 로고    scopus 로고
    • An exact nonparametric method for inferring mosaic structure in sequence triplets
    • Boni MF, Posada D, Feldman MW (2007) An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics 176: 1035-1047.
    • (2007) Genetics , vol.176 , pp. 1035-1047
    • Boni, M.F.1    Posada, D.2    Feldman, M.W.3
  • 2
    • 13744258250 scopus 로고    scopus 로고
    • Reverse genetics system for porcine enteric calicivirus, a prototype sapovirus in the Caliciviridae
    • Chang KO, Sosnovtsev SS, Belliot G, Wang Q, Saif LJ, Green KY (2005) Reverse genetics system for porcine enteric calicivirus, a prototype sapovirus in the Caliciviridae. J Virol 79: 1409-1416.
    • (2005) J Virol , vol.79 , pp. 1409-1416
    • Chang, K.O.1    Sosnovtsev, S.S.2    Belliot, G.3    Wang, Q.4    Saif, L.J.5    Green, K.Y.6
  • 5
    • 77955207826 scopus 로고    scopus 로고
    • Genetic diversity of porcine enteric caliciviruses in pigs raised in Rio de Janeiro State, Brazil
    • Cunha JB, de Mendonca MCL, Miagostovich MP, Leite JPG (2010) Genetic diversity of porcine enteric caliciviruses in pigs raised in Rio de Janeiro State, Brazil. Arch Virol 155: 1301-1305.
    • (2010) Arch Virol , vol.155 , pp. 1301-1305
    • Cunha, J.B.1    de Mendonca, M.C.L.2    Miagostovich, M.P.3    Leite, J.P.G.4
  • 8
    • 0033753825 scopus 로고    scopus 로고
    • Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences
    • Gibbs MJ, Armstrong JS, Gibbs AJ (2000) Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16: 573-582.
    • (2000) Bioinformatics , vol.16 , pp. 573-582
    • Gibbs, M.J.1    Armstrong, J.S.2    Gibbs, A.J.3
  • 9
    • 77949413366 scopus 로고    scopus 로고
    • Human caliciviruses detected in Mexican children admitted to hospital during 1998-2000, with severe acute gastroenteritis not due to other enteropathogens
    • Gutierrez-Escolano AL, Velazquez FR, Escobar-Herrera J, Saucedo CL, Torres J, Estrada-Garcia T (2010) Human caliciviruses detected in Mexican children admitted to hospital during 1998-2000, with severe acute gastroenteritis not due to other enteropathogens. J Med Virol: 632-637.
    • (2010) J Med Virol , pp. 632-637
    • Gutierrez-Escolano, A.L.1    Velazquez, F.R.2    Escobar-Herrera, J.3    Saucedo, C.L.4    Torres, J.5    Estrada-Garcia, T.6
  • 10
    • 0035088903 scopus 로고    scopus 로고
    • Detection and molecular characterization of cultivable caliciviruses from clinically normal mink and enteric caliciviruses associated with diarrhea in mink
    • Guo M, Evermann JF, Saif LJ (2001) Detection and molecular characterization of cultivable caliciviruses from clinically normal mink and enteric caliciviruses associated with diarrhea in mink. Arch Virol 146: 479-493.
    • (2001) Arch Virol , vol.146 , pp. 479-493
    • Guo, M.1    Evermann, J.F.2    Saif, L.J.3
  • 14
    • 72049083997 scopus 로고    scopus 로고
    • Genetic diversity of sapovirus infections in Danish children 2005-2007
    • Johnsen CK, Midgley S, Böttiger B (2009) Genetic diversity of sapovirus infections in Danish children 2005-2007. J Clin Virol 46: 265-269.
    • (2009) J Clin Virol , vol.46 , pp. 265-269
    • Johnsen, C.K.1    Midgley, S.2    Böttiger, B.3
  • 16
    • 0023017765 scopus 로고
    • The mechanism of RNA recombination in poliovirus
    • Kirkegaard K, Baltimore D (1986) The mechanism of RNA recombination in poliovirus. Cell 47: 433-443.
    • (1986) Cell , vol.47 , pp. 433-443
    • Kirkegaard, K.1    Baltimore, D.2
  • 18
    • 0026602984 scopus 로고
    • RNA Recombination in Animal and Plant Viruses
    • Lai MMC (1992) RNA Recombination in Animal and Plant Viruses. Microbiol Rev 56: 61-79.
    • (1992) Microbiol Rev , vol.56 , pp. 61-79
    • Lai, M.M.C.1
  • 20
    • 68049128027 scopus 로고    scopus 로고
    • Recombination detection and analysis using RDP3
    • Martin DP (2009) Recombination detection and analysis using RDP3. Methods Mol Biol 537: 185-205.
    • (2009) Methods Mol Biol , vol.537 , pp. 185-205
    • Martin, D.P.1
  • 21
    • 0033824415 scopus 로고    scopus 로고
    • RDP: detection of recombination amongst aligned sequences
    • Martin D, Rybicki E (2000) RDP: detection of recombination amongst aligned sequences. Bioinformatics 16: 562-563.
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 22
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: recombination detection and analysis from sequence alignments
    • Martin D, Williamson C, Posada D (2005) RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21: 260-262.
    • (2005) Bioinformatics , vol.21 , pp. 260-262
    • Martin, D.1    Williamson, C.2    Posada, D.3
  • 26
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • Padidam M, Sawer S, Fauquet CM (1999) Possible emergence of new geminiviruses by frequent recombination. Virology 265(2): 218-225.
    • (1999) Virology , vol.265 , Issue.2 , pp. 218-225
    • Padidam, M.1    Sawer, S.2    Fauquet, C.M.3
  • 27
    • 61849128825 scopus 로고    scopus 로고
    • Epidemiology and genotype analysis of sapovirus associated with gastroenteritis outbreaks in Alberta, Canada: 2004-2007
    • Pang XLL, Lee BE, Tyrrell GJ, Preiksaitis JK (2009) Epidemiology and genotype analysis of sapovirus associated with gastroenteritis outbreaks in Alberta, Canada: 2004-2007. J Infect Dis 199: 547-551.
    • (2009) J Infect Dis , vol.199 , pp. 547-551
    • Pang, X.L.L.1    Lee, B.E.2    Tyrrell, G.J.3    Preiksaitis, J.K.4
  • 31
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Smith JM (1992) Analyzing the mosaic structure of genes. J Mol Evol 34: 126-129.
    • (1992) J Mol Evol , vol.34 , pp. 126-129
    • Smith, J.M.1
  • 32
    • 0030158571 scopus 로고    scopus 로고
    • The Staden sequence analysis package
    • Staden R (1996) The Staden sequence analysis package. Mol Biotechnol 5: 233-241.
    • (1996) Mol Biotechnol , vol.5 , pp. 233-241
    • Staden, R.1
  • 34
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • doi: 10. 1093/molbev/msr121
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. doi: 10. 1093/molbev/msr121.
    • (2011) Mol Biol Evol
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 35
    • 0242268092 scopus 로고    scopus 로고
    • Detection of norovirus (GI, GII), Sapovirus and astrovirus in fecal samples using reverse transcription single-round multiplex PCR
    • Yan H, Yagyu F, Okitsu S, Nishio O, Ushijima H (2003) Detection of norovirus (GI, GII), Sapovirus and astrovirus in fecal samples using reverse transcription single-round multiplex PCR. J Virol Methods 114: 37-44.
    • (2003) J Virol Methods , vol.114 , pp. 37-44
    • Yan, H.1    Yagyu, F.2    Okitsu, S.3    Nishio, O.4    Ushijima, H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.