Characterization of novel porcine sapoviruses

Archives of Virology

Volumn 155, Issue 6, 2010, Pages 839-846

  L'Homme, Yvan ^a   Brassard, Julie ^b   Ouardani, Mourad ^a   Gagné, Marie Josée ^b  

^a CANADIAN FOOD INSPECTION AGENCY   (Canada)

^b FOOD RESEARCH AND DEVELOPMENT CENTRE   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ANIMAL DISEASE; ANIMAL HUSBANDRY; ARTICLE; CALICIVIRUS INFECTION; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; FECES; GASTROENTERITIS; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SAPOVIRUS; SWINE; SWINE DISEASE; VIROLOGY; VIRUS CAPSID;

ANIMAL HUSBANDRY; ANIMALS; BASE SEQUENCE; CALICIVIRIDAE INFECTIONS; CAPSID; FECES; GASTROENTERITIS; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SAPOVIRUS; SEQUENCE ANALYSIS, DNA; SWINE; SWINE DISEASES;

ANIMALIA; CALICIVIRIDAE; MIRIDAE; SUIDAE; SUS;

EID: 77953326243     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-010-0651-y     Document Type: Article

References (38)

1. Ando T, Monroe SS, Gentsch JR, Jin Q, Lewis DC, Glass RI (1995) Detection and differentiation of antigenically distinct small round-structured viruses (Norwalk-like viruses) by reverse transcription-PCR and southern hybridization. J Clin Microbiol 33(1): 64-71.
2. Chiba S, Sakuma Y, Kogasaka R, Akihara M, Horino K, Nakao T, Fukui S (1979) An outbreak of gastroenteritis associated with calicivirus in an infant home. J Med Virol 4(4): 249-254.
3. Collins PJ, Martella V, Buonavoglia C, O'Shea H (2009) Detection and characterization of porcine sapoviruses from asymptomatic animals in Irish farms. Vet Microbiol 139(1-2): 176-182.
4. Farkas T, Sestak K, Wei C, Jiang X (2008) Characterization of a rhesus monkey calicivirus representing a new genus of Caliciviridae. J Virol 82(11): 5408-5416.
5. Farkas T, Zhong WM, Jing Y, Huang PW, Espinosa SM, Martinez N, Morrow AL, Ruiz-Palacios GM, Pickering LK, Jiang X (2004) Genetic diversity among sapoviruses. Arch Virol 149(7): 1309-1323.
6. Green KY (2007) Caliciviridae: The Noroviruses. In: Knipe DM, Howley PM (eds) Fields virology. Wolters Kluwer Health/Lippincott Williams & Wilkins, Philadelphia pp 949-979.
7. Green KY, Ando T, Balayan MS, Berke T, Clarke IN, Estes MK, Matson DO, Nakata S, Neill JD, Studdert MJ, Thiel HJ (2000) Taxonomy of the caliciviruses. J Infect Dis 181(Suppl 2): S322-S330.
8. Guo M, Evermann JF, Saif LJ (2001) Detection and molecular characterization of cultivable caliciviruses from clinically normal mink and enteric caliciviruses associated with diarrhoea in mink. Arch Virol 146(3): 479-493.
9. Hansman GS, Oka T, Katayama K, Takeda N (2007) Human sapoviruses: genetic diversity, recombination, and classification. Rev Med Virol 17(2): 133-141.
10. Jeong C, Park SI, Park SH, Kim HH, Park SJ, Jeong JH, Choy HE, Saif LJ, Kim SK, Kang MI, Hyun BH, Cho KO (2007) Genetic diversity of porcine sapoviruses. Vet Microbiol 122(3-4): 246-257.
11. Jiang X, Huang PW, Zhong WM, Farkas T, Cubitt DW, Matson DO (1999) Design and evaluation of a primer pair that detects both Norwalk- and Sapporo-like caliciviruses by RT-PCR. J Virol Methods 83(1-2): 145-154.
12. Kageyama T, Kojima S, Shinohara M, Uchida K, Fukushi S, Hoshino FB, Takeda N, Katayama K (2003) Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR. J Clin Microbiol 41(4): 1548-1557.
13. Katayama K, Shirato-Horikoshi H, Kojima S, Kageyama T, Oka T, Hoshino F, Fukushi S, Shinohara M, Uchida K, Suzuki Y, Gojobori T, Takeda N (2002) Phylogenetic analysis of the complete genome of 18 Norwalk-like viruses. Virology 299(2): 225-239.
14. Kim HJ, Cho HS, Cho KO, Park NY (2006) Detection and molecular characterization of porcine enteric calicivirus in Korea, genetically related to sapoviruses. J Vet Med B Infect Dis Vet Public Health 53(4): 155-159.
15. Kumar S, Tamura K, Nei M (2004) MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5(2): 150-163.
16. L'Homme Y, Sansregret R, Plante-Fortier E, Lamontagne AM, Lacroix G, Ouardani M, Deschamps J, Simard G, Simard C (2009) Genetic diversity of porcine Norovirus and Sapovirus: Canada, 2005-2007. Arch Virol 154(4): 581-593.
17. L'Homme Y, Sansregret R, Plante-Fortier E, Lamontagne AM, Ouardani M, Lacroix G, Simard C (2009) Genomic characterization of swine caliciviruses representing a new genus of Caliciviridae. Virus Genes 39(1): 66-75.
18. Liu BL, Clarke IN, Caul EO, Lambden PR (1995) Human enteric caliciviruses have a unique genome structure and are distinct from the Norwalk-like viruses. Arch Virol 140(8): 1345-1356.
19. Martella V, Banyai K, Lorusso E, Bellacicco AL, Decaro N, Mari V, Saif L, Costantini V, De GS, Pezzotti G, Lavazza A, Buonavoglia C (2008) Genetic heterogeneity of porcine enteric caliciviruses identified from diarrhoeic piglets. Virus Genes 36(2): 365-373.
20. Martella V, Lorusso E, Banyai K, Decaro N, Corrente M, Elia G, Cavalli A, Radogna A, Costantini V, Saif LJ, Lavazza A, Di TL, Buonavoglia C (2008) Identification of a porcine calicivirus related genetically to human sapoviruses. J Clin Microbiol 46(6): 1907-1913.
21. Martinez MA, Alcala AC, Carruyo G, Botero L, Liprandi F, Ludert JE (2006) Molecular detection of porcine enteric caliciviruses in Venezuelan farms. Vet Microbiol 116(1-3): 77-84.
22. Nayak MK, Balasubramanian G, Sahoo GC, Bhattacharya R, Vinje J, Kobayashi N, Sarkar MC, Bhattacharya MK, Krishnan T (2008) Detection of a novel intergenogroup recombinant Norovirus from Kolkata, India. Virology 377(1): 117-123.
23. Oliver SL, Dastjerdi AM, Wong S, El-Attar L, Gallimore C, Brown DW, Green J, Bridger JC (2003) Molecular characterization of bovine enteric caliciviruses: a distinct third genogroup of noroviruses (Norwalk-like viruses) unlikely to be of risk to humans. J Virol 77(4): 2789-2798.
24. Pang XL, Honma S, Nakata S, Vesikari T (2000) Human caliciviruses in acute gastroenteritis of young children in the community. J Infect Dis 181(Suppl 2): S288-S294.
25. Phan TG, Khamrin P, Quang TD, Dey SK, Takanashi S, Okitsu S, Maneekarn N, Ushijima H (2007) Emergence of intragenotype recombinant sapovirus in Japan. Infect Genet Evol 7(4): 542-546.
26. Reuter G, Zimsek-Mijovski J, Poljsak-Prijatelj M, Di BI, Ruggeri FM, Kantala T, Maunula L, Kiss I, Kecskemeti S, Halaihel N, Buesa J, Johnsen C, Hjulsager CK, Larsen LE, Koopmans M, Bottiger B (2009) Incidence, diversity and molecular epidemiology of sapoviruses in swine across Europe. J Clin Microbiol 48: 363-368.
27. Saif LJ, Bohl EH, Theil KW, Cross RF, House JA (1980) Rotavirus-like, calicivirus-like, and 23-nm virus-like particles associated with diarrhoea in young pigs. J Clin Microbiol 12(1): 105-111.
28. Sakai Y, Nakata S, Honma S, Tatsumi M, Numata-Kinoshita K, Chiba S (2001) Clinical severity of Norwalk virus and Sapporo virus gastroenteritis in children in Hokkaido, Japan. Pediatr Infect Dis J 20(9): 849-853.
29. Schuffenecker I, Ando T, Thouvenot D, Lina B, Aymard M (2001) Genetic classification of "Sapporo-like viruses". Arch Virol 146(11): 2115-2132.
30. Scotto-Lavino E, Du G, Frohman MA (2006) 3′ end cDNA amplification using classic RACE. Nat Protoc 1(6): 2742-2745.
31. Smiley JR, Chang KO, Hayes J, Vinje J, Saif LJ (2002) Characterization of an enteropathogenic bovine calicivirus representing a potentially new calicivirus genus. J Virol 76(20): 10089-10098.
32. Wang QH, Chang KO, Han MG, Sreevatsan S, Saif LJ (2006) Development of a new microwell hybridization assay and an internal control RNA for the detection of porcine noroviruses and sapoviruses by reverse transcription-PCR. J Virol Methods 132(1-2): 135-145.
33. Wang QH, Costantini V, Saif LJ (2007) Porcine enteric caliciviruses: genetic and antigenic relatedness to human caliciviruses, diagnosis and epidemiology. Vaccine 25(30): 5453-5466.
34. Wang QH, Han MG, Funk JA, Bowman G, Janies DA, Saif LJ (2005) Genetic diversity and recombination of porcine sapoviruses. J Clin Microbiol 43(12): 5963-5972.
35. Wang QH, Souza M, Funk JA, Zhang W, Saif LJ (2006) Prevalence of noroviruses and sapoviruses in swine of various ages determined by reverse transcription-PCR and microwell hybridization assays. J Clin Microbiol 44(6): 2057-2062.
36. Wu FT, Oka T, Takeda N, Katayama K, Hansman GS, Muo CH, Liang SY, Hung CH, Dah-Shyong JD, Hsin CJ, Yang JY, Wu HS, Yang CF (2008) Acute gastroenteritis caused by GI/2 sapovirus, Taiwan, 2007. Emerg Infect Dis 14(7): 1169-1171.
37. Yin Y, Tohya Y, Ogawa Y, Numazawa D, Kato K, Akashi H (2006) Genetic analysis of calicivirus genomes detected in intestinal contents of piglets in Japan. Arch Virol 151(9): 1749-1759.
38. Zheng DP, Ando T, Fankhauser RL, Beard RS, Glass RI, Monroe SS (2006) Norovirus classification and proposed strain nomenclature. Virology 346(2): 312-323.