Design and evaluation of a primer pair that detects both Norwalk- and Sapporo-like caliciviruses by RT-PCR

Journal of Virological Methods

Volumn 83, Issue 1-2, 1999, Pages 145-154

  Jiang, X ^a   Huang, P W ^a   Zhong, W M ^a   Farkas, T ^a   Cubitt, D W ^b   Matson, D O ^a  

^a CHILDREN S HOSPITAL OF THE KING S DAUGHTERS   (United States)

^b UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

Caliciviruses; Primer pair; RT PCR

Indexed keywords

ACUTE GASTROENTERITIS; ARTICLE; CALICIVIRUS; ENVIRONMENTAL MONITORING; NONHUMAN; NORWALK GASTROENTERITIS VIRUS; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRUS DETECTION;

ADULT; BASE SEQUENCE; CALICIVIRIDAE; CALICIVIRIDAE INFECTIONS; CHILD; DISEASE OUTBREAKS; DNA PRIMERS; DNA-DIRECTED RNA POLYMERASES; EPIDEMIOLOGY, MOLECULAR; EVALUATION STUDIES; GASTROENTERITIS; HUMANS; NORWALK VIRUS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; VIROLOGY;

CALICIVIRIDAE; NARCISSUS LATENT VIRUS; NORWALK VIRUS; RNA VIRUSES;

EID: 0032703219     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0166-0934(99)00114-7     Document Type: Article

References (38)

1. Ando T., Mulders M.N., Lewis D.C., Estes M.K., Monroe S.S., Glass R.I. Comparison of the polymerase region of small round structured virus strains previously classified in three antigenic types by solid-phase immune electron microscopy. Arch. Virol. 135(1-2):1994;217-226.
2. Ando T., Monroe S.S., Gentsch J.R., Jin Q., Lewis D.C., Glass R.I. Detection and differentiation of antigenically distinct small round-structured viruses (Norwalk-like viruses) by reverse transcription-PCR and Southern hybridization. J. Clin. Microbiol. 33(1):1995;64-71.
3. Berke T., Golding B., Jiang X., Cubitt D.W., Wolfaardt M., Smith A.W., Matson D.O. Phylogenetic analysis of the Caliciviruses. J. Med. Virol. 52(4):1997;419-424.
4. Chiba S., Sakuma Y., Kogasaka R., Akihara M., Horino K., Nakao T., Fukui S. An outbreak of gastroenteritis associated with calicivirus in an infant home. J. Med. Virol. 4(4):1979;249-254.
5. Cubitt W.D. Diagnosis, occurrence and clinical significance of the human 'candidate' caliciviruses. Prog. Med. Virol. 36:1989;103-119.
6. Cubitt W.D., McSwiggan D.A. Seroepidemiological survey of the prevalence of antibodies to a strain of human calicivirus. J. Med. Virol. 21(4):1987;361-368.
7. Cubitt W.D., McSwiggan D.A., Moore W. Winter vomiting disease caused by calicivirus. J. Clin. Pathol. 32(8):1979;786-793.
8. Cubitt W.D., McSwiggan D.A., Arstall S. An outbreak of calicivirus infection in a mother and baby unit. J. Clin. Pathol. 33(11):1980;1095-1098.
9. Cubitt W.D., Pead P.J., Saeed A.A. A new serotype of calicivirus associated with an outbreak of gastroenteritis in a residential home for the elderly. J. Clin. Pathol. 34(8):1981;924-926.
10. Gray J.J., Wreghitt T.G., Cubitt W.D., Elliot P.R. An outbreak of gastroenteritis in a home for the elderly associated with astrovirus type 1 and human calicivirus. J. Med. Virol. 23:1987;377-381.
11. Green J., Gallimore C.I., Norcott J.P., Lewis D., Brown D.W. Broadly reactive reverse transcriptase polymerase chain reaction for the diagnosis of SRSV-associated gastroenteritis. J. Med. Virol. 47(4):1995;392-398.
12. Green K.Y., Ando T., Balayan M.S., Clarke I.N., Estes M.K., Matson D.O., Nakata S., Neil J.D., Studdert M.J., Thiel H.-J. Murphy F.A., Fauquet C.M., Bishop D.H.L., Ghabrial S.A., Jarvis A.W., Martelli G.P., Mayo M.A., Summers M.D. Virus Taxonomy, 7th Report of the International Committee on Taxonomy of Viruses. 1998;Academic Press, Orlando, FL.
13. Guerrero L., Calva J.J., Morrow A.L., Velazquez F.R., Tuz Dzib F., Lopez Vidal Y., Ortega H., Arroyo H., Cleary T.G., Pickering L.K. et al. Asymptomatic Shigella infections in a cohort of Mexican children younger than two years of age. Pediatr. Infect. Dis. J. 13(7):1994;597-602.
14. Guerrero M.L., Noel J.S., Mitchell D.K., Martinez J., Calva J.J., Morrow A.L., Martinez J., Rosales G., Velazquez R.F., Monroe S.S., Glass R.I., Pickering L.K., Ruiz-Palacios G.M. A prospective study of astrovirus diarrhea in young children. Pediatr. Infect. Dis. J. 17(8):1998;723-727.
15. Jiang X., Wang J., Graham D.Y., Estes M.K. Detection of Norwalk virus in stool by polymerase chain reaction. J. Clin. Microbiol. 30:1992;2529-2534.
16. Jiang X., Wang M., Wang K., Estes M.K. Sequence and genomic organization of Norwalk virus. Virology. 195(1):1993;51-61.
17. Jiang X., Cubitt D., Hu J., Dai X., Treanor J., Matson D.O., Pickering L.K. Development of an ELISA to detect MX virus, a human calicivirus in the Snow Mountain Agent genogroup. J. Gen. Virol. 76(Pt. 11):1995;2739-2747.
18. Jiang X., Matson D.O., Ruiz Palacios G.M., Hu J., Treanor J., Pickering L.K. Expression, self-assembly, and antigenicity of a Snow Mountain Agent-like calicivirus capsid protein. J. Clin. Microbiol. 33(6):1995;1452-1455.
19. Jiang X., Matson D.O., Velazquez F.R., Calva J.J., Zhong W.M., Hu J., Ruiz Palacios G.M., Pickering L.K. Study of Norwalk-related viruses in Mexican children. J. Med. Virol. 47(4):1995;309-316.
20. Jiang X., Wang J., Estes M.K. Characterization of SRSVs using RT-PCR and a new antigen ELISA. Arch. Virol. 140(2):1995d;363-374.
21. Jiang X., Matson D.O., Cubitt W.D., Estes M.K. Genetic and antigenic diversity of human caliciviruses (HuCVs) using RT-PCR and new EIAs. Arch. Virol. Suppl. 12:1996;251-262.
22. Jiang X., Cubitt W.D., Berke T., Zhong W., Dai X., Nakata S., Pickering L.K., Matson D.O. Sapporo-like human caliciviruses are genetically and antigenically diverse. Arch. Virol. 142(9):1997;1813-1827.
23. Le Guyader F., Estes M.K., Hardy M.E., Neill F.H., Green J., Brown D.W., Atmar R.L. Evaluation of a degenerate primer for the PCR detection of human caliciviruses. Arch. Virol. 141(11):1996;2225-2235.
24. Lew J.F., Kapikian A.Z., Valdesuso J., Green K.Y. Molecular characterization of Hawaii virus and other Norwalk-like viruses: evidence for genetic polymorphism among human caliciviruses. J. Infect. Dis. 170(3):1994;535-542.
25. Liu B.L., Clarke I.N., Caul E.O., Lambden P.R. Human enteric caliciviruses have a unique genome structure and are distinct from the Norwalk-like viruses. Arch. Virol. 140(8):1995;1345-1356.
26. Matson D.O., Zhong W.M., Nakata S., Numata K., Jiang X., Pickering L.K., Chiba S., Estes M.K. Molecular characterization of a human calicivirus with sequence relationships closer to animal caliciviruses than other known human caliciviruses. J. Med. Virol. 45(2):1995;215-222.
27. Moe C.L., Gentsch J., Ando T., Grohmann G., Monroe S.S., Jiang X., Wang J., Estes M.K., Seto Y., Humphrey C. et al. Application of PCR to detect Norwalk virus in fecal specimens from outbreaks of gastroenteritis. J. Clin. Microbiol. 32(3):1994;642-648.
28. Monroe S.S., Stine S.E., Jiang X., Estes M.K., Glass R.I. Detection of antibody to recombinant Norwalk virus antigen in specimens from outbreaks of gastroenteritis. J. Clin. Microbiol. 31(11):1993;2866-2872.
29. Nakata S., Chiba S., Terashima H., Nakao T. Prevalence of antibody to human calicivirus in Japan and Southeast Asia determined by radioimmunoassay. J. Clin. Microbiol. 22(4):1985;519-521.
30. Nakata S., Estes M.K., Chiba S. Detection of human calicivirus antigen and antibody by enzyme-linked immunosorbent assays. J. Clin. Microbiol. 26(10):1988;2001-2005.
31. Nakata S., Kogawa K., Numata K., Ukae S., Adachi N., Matson D.O., Estes M.K., Chiba S. The epidemiology of human calicivirus/Sapporo/82/Japan. Arch. Virol. Suppl. 12:1996;263-270.
32. Noel J.S., Ando T., Leite J.P., Green K.Y., Dingle K.E., Estes M.K., Seto Y., Monroe S.S., Glass R.I. Correlation of patient immune responses with genetically characterized small round-structured viruses involved in outbreaks of nonbacterial acute gastroenteritis in the United States, 1990 to 1995. J. Med. Virol. 53(4):1997;372-383.
33. Noel J.S., Liu B.L., Humphrey C.D., Rodriguez E.M., Lambden P.R., Clarke I.N., Dwyer D.M., Ando T., Glass R.I., Monroe S.S. Parkville virus: a novel genetic variant of human calicivirus in the Sapporo virus clade, associated with an outbreak of gastroenteritis in adults. J. Med. Virol. 52:1997;173-178.
34. Numata K., Hardy M.E., Nakata S., Chiba S., Estes M.K. Molecular characterization of morphologically typical human calicivirus Sapporo. Arch. Virol. 142(8):1997;1537-1552.
35. Velazquez F.R., Calva J.J., Guerrero M.L., Mass D., Glass R.I., Pickering L.K., Ruiz Palacios G.M. Cohort study of rotavirus serotype patterns in symptomatic and asymptomatic infections in Mexican children. Pediatr. Infect. Dis. J. 12(1):1993;54-61.
36. Velazquez F.R., Matson D.O., Calva J.J., Guerrero L., Morrow A.L., Carter Campbell S., Glass R.I., Estes M.K., Pickering L.K., Ruiz Palacios G.M. Rotavirus infections in infants as protection against subsequent infections. N. Engl. J. Med. 335(14):1996;1022-1028.
37. Vinjie J., Koopmans M.P. Molecular detection and epidemiology of small round-structured viruses in outbreaks of gastroenteritis in the Netherlands. J. Infect. Dis. 174(3):1996;610-615.
38. Wang J., Jiang X., Madore H.P., Gray J., Desselberger U., Ando T., Seto Y., Oishi I., Lew J.F., Green K.Y. et al. Sequence diversity of small, round-structured viruses in the Norwalk virus group. J. Virol. 68(9):1994;5982-5990.