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Volumn 4, Issue , 2013, Pages

Short-time movement of E. coli chromosomal loci depends on coordinate and subcellular localization

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; CHROMOSOME; FECAL COLIFORM; GENE EXPRESSION; POLYMER; PROTEIN;

EID: 84879610262     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms3003     Document Type: Article
Times cited : (112)

References (45)
  • 1
    • 0028231009 scopus 로고
    • The bacterial nucleoid revisited
    • Robinow, C. & Kellenberger, E. The bacterial nucleoid revisited. Microbiol. Rev. 58, 211-232 (1994).
    • (1994) Microbiol. Rev , vol.58 , pp. 211-232
    • Robinow, C.1    Kellenberger, E.2
  • 2
    • 0033538531 scopus 로고    scopus 로고
    • Fundamentally different logic of gene regulation in eukaryotes and prokaryotes
    • DOI 10.1016/S0092-8674(00)80599-1
    • Struhl, K. Fundamentally different logic of gene regulation in eukaryotes and prokaryotes. Cell 98, 1-4 (1999). (Pubitemid 29331189)
    • (1999) Cell , vol.98 , Issue.1 , pp. 1-4
    • Struhl, K.1
  • 4
    • 84863534788 scopus 로고    scopus 로고
    • Physical descriptions of the bacterial nucleoid at large scales, and their biological implications
    • Benza, V. et al. Physical descriptions of the bacterial nucleoid at large scales, and their biological implications. Rep. Prog. Phys. 75, 076602 (2012).
    • (2012) Rep. Prog. Phys , vol.75 , pp. 076602
    • Benza, V.1
  • 5
    • 14844304655 scopus 로고    scopus 로고
    • The new bacterial cell biology: Moving parts and subcellular architecture
    • DOI 10.1016/j.cell.2005.02.026
    • Gitai, Z. The new bacterial cell biology: moving parts and subcellular architecture. Cell 120, 577-586 (2005). (Pubitemid 40343071)
    • (2005) Cell , vol.120 , Issue.5 , pp. 577-586
    • Gitai, Z.1
  • 7
    • 0036433665 scopus 로고    scopus 로고
    • The segregation of the Escherichia coli origin and terminus of replication
    • DOI 10.1046/j.1365-2958.2002.03234.x
    • Li, Y. F., Sergueev, K. & Austin, S. The segregation of the Escherichia coli origin and terminus of replication. Mol. Microbiol. 46, 985-995 (2002). (Pubitemid 35370587)
    • (2002) Molecular Microbiology , vol.46 , Issue.4 , pp. 985-995
    • Li, Y.1    Sergueev, K.2    Austin, S.3
  • 8
    • 79251604784 scopus 로고    scopus 로고
    • The terminal region of the E. coli chromosome localises at the periphery of the nucleoid
    • Meile, J.-C., Mercier, R., Stouf, M., Pages, C., Bouet, J.-Y. & Cornet, F. The terminal region of the E. coli chromosome localises at the periphery of the nucleoid. BMC Microbiol. 11, 28 (2011).
    • (2011) BMC Microbiol , vol.11 , pp. 28
    • Meile, J.-C.1    Mercier, R.2    Stouf, M.3    Pages, C.4    Bouet, J.-Y.5    Cornet, F.6
  • 9
    • 77950455981 scopus 로고    scopus 로고
    • Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament
    • Wiggins, P. A., Cheveralls, K. C., Martin, J. S., Lintner, R. & Kondev, J. Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament. Proc. Natl Acad. Sci. USA 107, 4991-4995 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 4991-4995
    • Wiggins, P.A.1    Cheveralls, K.C.2    Martin, J.S.3    Lintner, R.4    Kondev, J.5
  • 10
    • 33749177128 scopus 로고    scopus 로고
    • The Escherichia coli chromosome is organized with the left and right chromosome arms in separate cell halves
    • DOI 10.1111/j.1365-2958.2006.05346.x
    • Nielsen, H. J., Ottesen, J. R., Youngren, B., Austin, S. J. & Hansen, F. G. The Escherichia coli chromosome is organized with the left and right chromosome arms in separate cell halves. Mol. Microbiol. 62, 331-338 (2006). (Pubitemid 44477225)
    • (2006) Molecular Microbiology , vol.62 , Issue.2 , pp. 331-338
    • Nielsen, H.J.1    Ottesen, J.R.2    Youngren, B.3    Austin, S.J.4    Hansen, F.G.5
  • 11
    • 33745603713 scopus 로고    scopus 로고
    • The two Escherichia coli chromosome arms locate to separate cell halves
    • DOI 10.1101/gad.388406
    • Wang, X. D., Liu, X., Possoz, C. & Sherratt, D. J. The two Escherichia coli chromosome arms locate to separate cell halves. Genes Dev. 20, 1727-1731 (2006). (Pubitemid 43992881)
    • (2006) Genes and Development , vol.20 , Issue.13 , pp. 1727-1731
    • Wang, X.1    Liu, X.2    Possoz, C.3    Sherratt, D.J.4
  • 12
    • 0041853574 scopus 로고    scopus 로고
    • Bacterial chromosome dynamics
    • DOI 10.1126/science.1084780
    • Sherratt, D. J. Bacterial chromosome dynamics. Science 301, 780-785 (2003). (Pubitemid 36962608)
    • (2003) Science , vol.301 , Issue.5634 , pp. 780-785
    • Sherratt, D.J.1
  • 13
    • 0034650256 scopus 로고    scopus 로고
    • Dynamic organization of chromosomal DNA in Escherichia coli
    • Niki, H., Yamaichi, Y. & Hiraga, S. Dynamic organization of chromosomal DNA in Escherichia coli. Genes Dev. 14, 212-223 (2000). (Pubitemid 30070986)
    • (2000) Genes and Development , vol.14 , Issue.2 , pp. 212-223
    • Niki, H.1    Yamaichi, Y.2    Hiraga, S.3
  • 14
  • 15
    • 20444390654 scopus 로고    scopus 로고
    • Chromosome and replisome dynamics in E. coli: Loss of sister cohesion triggers global chromosome movement and mediates chromosome segregation
    • DOI 10.1016/j.cell.2005.04.013, PII S0092867405003934
    • Bates, D. & Kleckner, N. Chromosome and replisome dynamics in E. coli: loss of sister cohesion triggers global chromosome movement and mediates chromosome segregation. Cell 121, 899-911 (2005). (Pubitemid 40806421)
    • (2005) Cell , vol.121 , Issue.6 , pp. 899-911
    • Bates, D.1    Kleckner, N.2
  • 16
    • 44249103292 scopus 로고    scopus 로고
    • DNA dynamics vary according to macrodomain topography in the E. coli chromosome
    • DOI 10.1111/j.1365-2958.2008.06239.x
    • Esṕeli, O., Mercier, R. & Boccard, F. DNA dynamics vary according to macrodomain topography in the E. coli chromosome. Mol. Microbiol. 68, 1418-1427 (2008). (Pubitemid 351725253)
    • (2008) Molecular Microbiology , vol.68 , Issue.6 , pp. 1418-1427
    • Espeli, O.1    Mercier, R.2    Boccard, F.3
  • 17
    • 9144264275 scopus 로고    scopus 로고
    • Macrodomain organization of the Escherichia coli chromosome
    • DOI 10.1038/sj.emboj.7600434
    • Valens, M., Penaud, S., Rossignol, M., Cornet, F. & Boccard, F. Macrodomain organization of the Escherichia coli chromosome. EMBO J. 23, 4330-4341 (2004). (Pubitemid 39546170)
    • (2004) EMBO Journal , vol.23 , Issue.21 , pp. 4330-4341
    • Valens, M.1    Penaud, S.2    Rossignol, M.3    Cornet, F.4    Boccard, F.5
  • 18
    • 84864147092 scopus 로고    scopus 로고
    • A MatP-divisome interaction coordinates chromosome segregation with cell division in E. coli
    • Esṕeli, O. et al. A MatP-divisome interaction coordinates chromosome segregation with cell division in E. coli. EMBO J. 31, 3198-3211 (2012).
    • (2012) EMBO J , vol.31 , pp. 3198-3211
    • Esṕeli, O.1
  • 19
    • 79952591477 scopus 로고    scopus 로고
    • Escherichia coli sister chromosome separation includes an abrupt global transition with concomitant release of late-splitting intersister snaps
    • Joshi, M. C. et al. Escherichia coli sister chromosome separation includes an abrupt global transition with concomitant release of late-splitting intersister snaps. Proc. Natl Acad. Sci. USA 108, 2765-2770 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 2765-2770
    • Joshi, M.C.1
  • 20
    • 77953494844 scopus 로고    scopus 로고
    • Bacterial chromosomal loci move subdiffusively through a viscoelastic cytoplasm
    • Weber, S. C., Spakowitz, A. J. & Theriot, J. A. Bacterial chromosomal loci move subdiffusively through a viscoelastic cytoplasm. Phys. Rev. Lett. 104, 238102 (2010).
    • (2010) Phys. Rev. Lett , vol.104 , pp. 238102
    • Weber, S.C.1    Spakowitz, A.J.2    Theriot, J.A.3
  • 21
    • 84860807645 scopus 로고    scopus 로고
    • Nonthermal ATP-dependent fluctuations contribute to the in vivo motion of chromosomal loci
    • Weber, S. C., Spakowitz, A. J. & Theriot, J. A. Nonthermal ATP-dependent fluctuations contribute to the in vivo motion of chromosomal loci. Proc. Natl Acad. Sci. USA 109, 7338-7343 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 7338-7343
    • Weber, S.C.1    Spakowitz, A.J.2    Theriot, J.A.3
  • 22
    • 84861914265 scopus 로고    scopus 로고
    • Analytical tools to distinguish the effects of localization error, confinement, and medium elasticity on the velocity autocorrelation function
    • Weber, S. C., Thompson, M. A., Moerner, W. E., Spakowitz, A. J. & Theriot, J. A. Analytical tools to distinguish the effects of localization error, confinement, and medium elasticity on the velocity autocorrelation function. Biophys. J. 102, 2443-2450 (2012).
    • (2012) Biophys. J , vol.102 , pp. 2443-2450
    • Weber, S.C.1    Thompson, M.A.2    Moerner, W.E.3    Spakowitz, A.J.4    Theriot, J.A.5
  • 24
    • 15544368498 scopus 로고    scopus 로고
    • Microrheology of complex fluids
    • DOI 10.1088/0034-4885/68/3/R04
    • Waigh, T. A. Microrheology of complex fluids. Rep. Progr. Phys. 68, 685-742 (2005). (Pubitemid 40405950)
    • (2005) Reports on Progress in Physics , vol.68 , Issue.3 , pp. 685-742
    • Waigh, T.A.1
  • 25
    • 37249063696 scopus 로고    scopus 로고
    • Microrheology: A review of the method and applications
    • DOI 10.1039/b706004c
    • Cicuta, P. & Donald, A. M. Microrheology: a review of the method and applications. Soft Matter 3, 1449-1455 (2007). (Pubitemid 350264487)
    • (2007) Soft Matter , vol.3 , Issue.12 , pp. 1449-1455
    • Cicuta, P.1    Donald, A.M.2
  • 26
    • 2542627629 scopus 로고    scopus 로고
    • Elastic behavior of cross-linked and bundled actin networks
    • DOI 10.1126/science.1095087
    • Gardel, M., Shin, J., MacKintosh, F., Mahadevan, L., Matsudaira, P. & Weitz, D. Elastic behavior of cross-linked and bundled actin networks. Science 304, 1301-1305 (2004). (Pubitemid 38697422)
    • (2004) Science , vol.304 , Issue.5675 , pp. 1301-1305
    • Gardel, M.L.1    Shin, J.H.2    MacKintosh, F.C.3    Mahadevan, L.4    Matsudaira, P.5    Weitz, D.A.6
  • 27
    • 77954819972 scopus 로고    scopus 로고
    • Subdiffusive motion of a polymer composed of subdiffusive monomers
    • Weber, S. C., Theriot, J. A. & Spakowitz, A. J. Subdiffusive motion of a polymer composed of subdiffusive monomers. Phys. Rev. E 82, 011913 (2010).
    • (2010) Phys. Rev. e , vol.82 , pp. 011913
    • Weber, S.C.1    Theriot, J.A.2    Spakowitz, A.J.3
  • 28
    • 0036231415 scopus 로고    scopus 로고
    • Precise nanometer localization analysis for individual fluorescent probes
    • Thompson, R., Larson, D. & Webb, W. Precise nanometer localization analysis for individual fluorescent probes. Biophys. J. 82, 2775-2783 (2002). (Pubitemid 34441314)
    • (2002) Biophysical Journal , vol.82 , Issue.5 , pp. 2775-2783
    • Thompson, R.E.1    Larson, D.R.2    Webb, W.W.3
  • 29
    • 48449087576 scopus 로고    scopus 로고
    • Robust single-particle tracking in live-cell time-lapse sequences
    • Jaqaman, K. et al. Robust single-particle tracking in live-cell time-lapse sequences. Nat. Methods 5, 695-702 (2008).
    • (2008) Nat. Methods , vol.5 , pp. 695-702
    • Jaqaman, K.1
  • 30
    • 84875839469 scopus 로고    scopus 로고
    • Microfluidic chemostat for measuring single cell dynamics in bacteria
    • Long, Z. et al. Microfluidic chemostat for measuring single cell dynamics in bacteria. Lab. Chip 13, 947-954 (2013).
    • (2013) Lab. Chip , vol.13 , pp. 947-954
    • Long, Z.1
  • 31
    • 59349102367 scopus 로고    scopus 로고
    • Ergodic properties of fractional Brownian-Langevin motion
    • Deng, W. & Barkai, E. Ergodic properties of fractional Brownian-Langevin motion. Phys. Rev. E 79, 011112 (2009).
    • (2009) Phys. Rev. e , vol.79 , pp. 011112
    • Deng, W.1    Barkai, E.2
  • 33
    • 84860548408 scopus 로고    scopus 로고
    • Long-range chromosome organization in E. coli: A site-specific system isolates the ter macrodomain
    • Thiel, A., Valens, M., Vallet-Gely, I., Esṕeli, O. & Boccard, F. Long-range chromosome organization in E. coli: a site-specific system isolates the ter macrodomain. PLoS Genet. 8, 564-575 (2012).
    • (2012) PLoS Genet , vol.8 , pp. 564-575
    • Thiel, A.1    Valens, M.2    Vallet-Gely, I.3    Esṕeli, O.4    Boccard, F.5
  • 34
    • 72249097352 scopus 로고    scopus 로고
    • Growth rate-dependent global effects on gene expression in bacteria
    • Klumpp, S., Zhang, Z. & Hwa, T. Growth rate-dependent global effects on gene expression in bacteria. Cell 139, 1366-1375 (2009).
    • (2009) Cell , vol.139 , pp. 1366-1375
    • Klumpp, S.1    Zhang, Z.2    Hwa, T.3
  • 35
    • 74149085645 scopus 로고    scopus 로고
    • Coordination of genomic structure and transcription by the main bacterial nucleoid-associated protein HU
    • Berger, M. et al. Coordination of genomic structure and transcription by the main bacterial nucleoid-associated protein HU. EMBO Rep. 11, 59-64 (2010).
    • (2010) EMBO Rep , vol.11 , pp. 59-64
    • Berger, M.1
  • 36
    • 84856023505 scopus 로고    scopus 로고
    • Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle
    • Sobetzko, P., Travers, A. & Muskhelishvili, G. Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle. Proc. Natl Acad. Sci. USA 109, E42-E50 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109
    • Sobetzko, P.1    Travers, A.2    Muskhelishvili, G.3
  • 37
    • 79959843457 scopus 로고    scopus 로고
    • Chromosomal macrodomains and associated proteins: Implications for DNA organization and replication in gram negative bacteria
    • Dame, R., Kalmykowa, O. & Grainger, D. Chromosomal macrodomains and associated proteins: implications for DNA organization and replication in gram negative bacteria. PLoS Genet. 7, e1002123 (2011).
    • (2011) PLoS Genet , vol.7
    • Dame, R.1    Kalmykowa, O.2    Grainger, D.3
  • 38
    • 79951661202 scopus 로고    scopus 로고
    • Gene clusters reflecting macrodomain structure respond to nucleoid perturbations
    • Scolari, V. F., Bassetti, B., Sclavi, B. & Cosentino Lagomarsino, M. Gene clusters reflecting macrodomain structure respond to nucleoid perturbations. Mol. Biosyst. 7, 878-888 (2011).
    • (2011) Mol. Biosyst , vol.7 , pp. 878-888
    • Scolari, V.F.1    Bassetti, B.2    Sclavi, B.3    Cosentino Lagomarsino, M.4
  • 39
    • 84874844732 scopus 로고    scopus 로고
    • Gene silencing and large-scale domain structure of the e
    • Zarei, M., Sclavi, B. & Lagomarsino, M. C. Gene silencing and large-scale domain structure of the E. coli genome. Mol. Biosyst. 9, 758-767 (2013).
    • (2013) Coli Genome. Mol. Biosyst , vol.9 , pp. 758-767
    • Zarei, M.1    Sclavi, B.2    Lagomarsino, M.C.3
  • 40
    • 84859235483 scopus 로고    scopus 로고
    • Bacterial chromosome segregation
    • Possoz, C., Junier, I. & Espeli, O. Bacterial chromosome segregation. Front. Biosci. 17, 1020-1034 (2012).
    • (2012) Front. Biosci , vol.17 , pp. 1020-1034
    • Possoz, C.1    Junier, I.2    Espeli, O.3
  • 42
    • 58449118337 scopus 로고    scopus 로고
    • The organization of the bacterial genome
    • Rocha, E. P. The organization of the bacterial genome. Annu. Rev. Genet. 42, 17-23 (2008).
    • (2008) Annu. Rev. Genet , vol.42 , pp. 17-23
    • Rocha, E.P.1
  • 43
    • 80052643394 scopus 로고    scopus 로고
    • Chromosome organization by a nucleoid-associated protein in live bacteria
    • Wang, W., Li, G.-W., Chen, C., Xie, X. S. & Zhuang, X. Chromosome organization by a nucleoid-associated protein in live bacteria. Science 333, 1445-1449 (2011).
    • (2011) Science , vol.333 , pp. 1445-1449
    • Wang, W.1    Li, G.-W.2    Chen, C.3    Xie, X.S.4    Zhuang, X.5
  • 44
    • 84863969022 scopus 로고    scopus 로고
    • Galactose repressor mediated intersegmental chromosomal connections in Escherichia coli
    • Qian, Z., Dimitriadis, E. K., Edgar, R., Eswaramoorthy, P. & Adhya, S. Galactose repressor mediated intersegmental chromosomal connections in Escherichia coli. Proc. Natl Acad. Sci. USA 109, 11336-11341 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 11336-11341
    • Qian, Z.1    Dimitriadis, E.K.2    Edgar, R.3    Eswaramoorthy, P.4    Adhya, S.5
  • 45
    • 84863534108 scopus 로고    scopus 로고
    • NuST analysis of the interplay between nucleoid organization and gene expression
    • Scolari, V. F., Zarei, M., Osella, M. & Cosentino Lagomarsino, M. NuST: analysis of the interplay between nucleoid organization and gene expression. Bioinformatics 28, 1643-1644 (2012).
    • (2012) Bioinformatics , vol.28 , pp. 1643-1644
    • Scolari, V.F.1    Zarei, M.2    Osella, M.3    Cosentino Lagomarsino, M.4


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