메뉴 건너뛰기




Volumn 980, Issue , 2013, Pages 61-120

Optimal molecular profiling of tissue and tissue components: De fining the best processing and microdissection methods for biomedical applications

Author keywords

DNA; Fixation; Histopathology; Laser capture microdissection; Protein extraction; RNA; Sample preparation

Indexed keywords

CHLOROFORM; DEOXYRIBONUCLEASE; EOSIN; FIXATIVE; FORMALDEHYDE; HEMATOXYLIN; METHYL GREEN; METHYLENE BLUE; NEUTRAL RED; PARAFFIN; RNA; SUCROSE; NUCLEIC ACID;

EID: 84879570392     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-287-2_5     Document Type: Article
Times cited : (10)

References (64)
  • 1
    • 38849181724 scopus 로고    scopus 로고
    • Contaminating cells alter gene signatures in whole organ versus laser capture microdissected tumors: A comparison of experimental breast cancers and their lymph node metastases
    • Harrell JC, Dye WW, Harvell DM, Sartorius CA, Horwitz KB (2008) Contaminating cells alter gene signatures in whole organ versus laser capture microdissected tumors: a comparison of experimental breast cancers and their lymph node metastases. Clin Exp Metastasis 25:81-88
    • (2008) Clin Exp Metastasis , vol.25 , pp. 81-88
    • Harrell, J.C.1    Dye, W.W.2    Harvell, D.M.3    Sartorius, C.A.4    Horwitz, K.B.5
  • 2
    • 64649094395 scopus 로고    scopus 로고
    • Impact of sample acquisition and linear amplification on gene expression pro filing of lung adenocarcinoma: Laser capture microdissection cell-sampling versus bulk tissue-sampling
    • Klee EW, Erdogan S, Tillmans L, Kosari F, Sun Z, Wigle DA, Yang P, Aubry MC, Vasmatzis G (2009) Impact of sample acquisition and linear amplification on gene expression pro filing of lung adenocarcinoma: laser capture microdissection cell-sampling versus bulk tissue-sampling. BMC Med Genomics 2:13
    • (2009) BMC Med Genomics , vol.2 , pp. 13
    • Klee, E.W.1    Erdogan, S.2    Tillmans, L.3    Kosari, F.4    Sun, Z.5    Wigle, D.A.6    Yang, P.7    Aubry, M.C.8    Vasmatzis, G.9
  • 8
    • 85047686731 scopus 로고    scopus 로고
    • Microdissection of histologic sections: Past, present, and future
    • Eltoum IA, Siegal GP, Frost AR (2002) Microdissection of histologic sections: past, present, and future. Adv Anat Pathol 9: 316-322
    • (2002) Adv Anat Pathol , vol.9 , pp. 316-322
    • Eltoum, I.A.1    Siegal, G.P.2    Frost, A.R.3
  • 9
    • 0036898005 scopus 로고    scopus 로고
    • Effect of fixatives and tissue processing on the content and integrity of nucleic acids
    • Srinivasan M, Sedmak D, Jewell S (2002) Effect of fixatives and tissue processing on the content and integrity of nucleic acids. Am J Pathol 161:1961-1971
    • (2002) Am J Pathol , vol.161 , pp. 1961-1971
    • Srinivasan, M.1    Sedmak, D.2    Jewell, S.3
  • 10
    • 0035559449 scopus 로고    scopus 로고
    • Molecular pro filing of tissue samples using laser capture microdissection
    • Best CJ, Emmert-Buck MR (2001) Molecular pro filing of tissue samples using laser capture microdissection. Expert Rev Mol Diagn 1:53-60
    • (2001) Expert Rev Mol Diagn , vol.1 , pp. 53-60
    • Best, C.J.1    Emmert-Buck, M.R.2
  • 12
    • 0034653739 scopus 로고    scopus 로고
    • Layered expression scanning: Rapid molecular pro filing of tumor samples
    • Englert CR, Baibakov GV, Emmert-Buck MR (2000) Layered expression scanning: rapid molecular pro filing of tumor samples. Cancer Res 60:1526-1530
    • (2000) Cancer Res , vol.60 , pp. 1526-1530
    • Englert, C.R.1    Baibakov, G.V.2    Emmert-Buck, M.R.3
  • 31
    • 0031695171 scopus 로고    scopus 로고
    • A simple, precise and economical microdissection technique for analysis of genomic DNA from archival tissue sections
    • Lee JY, Dong SM, Kim SY, Yoo NJ, Lee SH, Park WS (1998) A simple, precise and economical microdissection technique for analysis of genomic DNA from archival tissue sections. Virchows Arch 433:305-309
    • (1998) Virchows Arch , vol.433 , pp. 305-309
    • Lee, J.Y.1    Dong, S.M.2    Kim, S.Y.3    Yoo, N.J.4    Lee, S.H.5    Park, W.S.6
  • 33
    • 0034975536 scopus 로고    scopus 로고
    • A new method for histological microdissection utilizing an ultrasonically oscillating needle: Demonstrated by differential mRNA expression in human lung carcinoma tissue
    • Harsch M, Bendrat K, Hofmeier G, Branscheid D, Niendorf A (2001) A new method for histological microdissection utilizing an ultrasonically oscillating needle: demonstrated by differential mRNA expression in human lung carcinoma tissue. Am J Pathol 158: 1985-1990
    • (2001) Am J Pathol , vol.158 , pp. 1985-1990
    • Harsch, M.1    Bendrat, K.2    Hofmeier, G.3    Branscheid, D.4    Niendorf, A.5
  • 34
    • 13144267774 scopus 로고    scopus 로고
    • A simple combined microdissection and aspiration device for the rapid procurement of single cells from clinical peripheral blood smears
    • Beltinger CP, Debatin KM (1998) A simple combined microdissection and aspiration device for the rapid procurement of single cells from clinical peripheral blood smears. Mol Pathol 51:233-236
    • (1998) Mol Pathol , vol.51 , pp. 233-236
    • Beltinger, C.P.1    Debatin, K.M.2
  • 38
    • 0033022067 scopus 로고    scopus 로고
    • Effects of fixation on RNA extraction and ampli fication from laser capture microdissected tissue
    • Goldsworthy SM, Stockton PS, Trempus CS, Foley JF, Maronpot RR (1999) Effects of fixation on RNA extraction and ampli fication from laser capture microdissected tissue. Mol Carcinog 25:86-91
    • (1999) Mol Carcinog , vol.25 , pp. 86-91
    • Goldsworthy, S.M.1    Stockton, P.S.2    Trempus, C.S.3    Foley, J.F.4    Maronpot, R.R.5
  • 40
    • 0036408225 scopus 로고    scopus 로고
    • Use of laser capture microdissection to selectively obtain distinct populations of cells for proteomic analysis
    • Craven RA, Banks RE (2002) Use of laser capture microdissection to selectively obtain distinct populations of cells for proteomic analysis. Methods Enzymol 356:33-49
    • (2002) Methods Enzymol , vol.356 , pp. 33-49
    • Craven, R.A.1    Banks, R.E.2
  • 41
    • 0037343103 scopus 로고    scopus 로고
    • Laser-capture microdissection, a tool for the global analysis of gene expression in speci fic plant cell types: Identi fication of genes expressed differentially in epidermal cells or vascular tissues of maize
    • Nakazono M, Qiu F, Borsuk LA, Schnable PS (2003) Laser-capture microdissection, a tool for the global analysis of gene expression in speci fic plant cell types: identi fication of genes expressed differentially in epidermal cells or vascular tissues of maize. Plant Cell 15: 583-596
    • (2003) Plant Cell , vol.15 , pp. 583-596
    • Nakazono, M.1    Qiu, F.2    Borsuk, L.A.3    Schnable, P.S.4
  • 42
    • 0037320528 scopus 로고    scopus 로고
    • Accurate and reproducible gene expression pro files from laser capture microdissection, transcript ampli fication, and high density oligonucleotide microarray analysis
    • Luzzi V, Mahadevappa M, Raja R, Warrington JA, Watson MA (2003) Accurate and reproducible gene expression pro files from laser capture microdissection, transcript ampli fication, and high density oligonucleotide microarray analysis. J Mol Diagn 5:9-14
    • (2003) J Mol Diagn , vol.5 , pp. 9-14
    • Luzzi, V.1    Mahadevappa, M.2    Raja, R.3    Warrington, J.A.4    Watson, M.A.5
  • 45
    • 0043065383 scopus 로고    scopus 로고
    • High quality RNA retrieved from samples obtained by using LMPC (laser microdissection and pressure catapulting) technology
    • Burgemeister R, Gangnus R, Haar B, Schutze K, Sauer U (2003) High quality RNA retrieved from samples obtained by using LMPC (laser microdissection and pressure catapulting) technology. Pathol Res Pract 199:431-436
    • (2003) Pathol Res Pract , vol.199 , pp. 431-436
    • Burgemeister, R.1    Gangnus, R.2    Haar, B.3    Schutze, K.4    Sauer, U.5
  • 48
    • 0034462884 scopus 로고    scopus 로고
    • Laser-assisted microdissection and short tandem repeat PCR for the investigation of graft chimerism after solid organ transplantation
    • Kleeberger W, Rothamel T, Glockner S, Lehmann U, Kreipe H (2000) Laser-assisted microdissection and short tandem repeat PCR for the investigation of graft chimerism after solid organ transplantation. Pathobiology 68:196-201
    • (2000) Pathobiology , vol.68 , pp. 196-201
    • Kleeberger, W.1    Rothamel, T.2    Glockner, S.3    Lehmann, U.4    Kreipe, H.5
  • 49
    • 0037296582 scopus 로고    scopus 로고
    • Detection of gene expression of vascular endothelial growth factor and flk-1 in the renal glomeruli of the normal rat kidney using the laser microdissection system
    • Inoue K, Sakurada Y, Murakami M, Shirota M, Shirota K (2003) Detection of gene expression of vascular endothelial growth factor and flk-1 in the renal glomeruli of the normal rat kidney using the laser microdissection system. Virchows Arch 442:159-162
    • (2003) Virchows Arch , vol.442 , pp. 159-162
    • Inoue, K.1    Sakurada, Y.2    Murakami, M.3    Shirota, M.4    Shirota, K.5
  • 51
    • 0032787816 scopus 로고    scopus 로고
    • Use of a mechanical dissociation device to improve standardization of flow cytometric cytokeratin DNA measurements of colon carcinomas
    • Brockhoff G, Fleischmann S, Meier A, Wachs FP, Hofstaedter F, Kneehole R (1999) Use of a mechanical dissociation device to improve standardization of flow cytometric cytokeratin DNA measurements of colon carcinomas. Cytometry 38:184-191
    • (1999) Cytometry , vol.38 , pp. 184-191
    • Brockhoff, G.1    Fleischmann, S.2    Meier, A.3    Wachs, F.P.4    Hofstaedter, F.5    Kneehole, R.6
  • 52
    • 0034632218 scopus 로고    scopus 로고
    • Fractionation of cells and subcellular particles with Percoll
    • Pertoft H (2000) Fractionation of cells and subcellular particles with Percoll. J Biochem Biophys Methods 44:1-30
    • (2000) J Biochem Biophys Methods , vol.44 , pp. 1-30
    • Pertoft, H.1
  • 54
    • 0030943295 scopus 로고    scopus 로고
    • Microdissection and polymerase chain reaction ampli fication of genomic DNA from histological tissue sections
    • Moskaluk CA, Kern SE (1997) Microdissection and polymerase chain reaction ampli fication of genomic DNA from histological tissue sections. Am J Pathol 150:1547-1552
    • (1997) Am J Pathol , vol.150 , pp. 1547-1552
    • Moskaluk, C.A.1    Kern, S.E.2
  • 55
    • 0022253232 scopus 로고
    • Puri fication of DNA from formaldehyde fixed and paraf fin embedded human tissue
    • Goelz SE, Hamilton SR, Vogelstein B (1985) Puri fication of DNA from formaldehyde fixed and paraf fin embedded human tissue. Biochem Biophys Res Commun 130:118-126
    • (1985) Biochem Biophys Res Commun , vol.130 , pp. 118-126
    • Goelz, S.E.1    Hamilton, S.R.2    Vogelstein, B.3
  • 58
    • 0033774173 scopus 로고    scopus 로고
    • Collagenase digestion and mechanical disaggregation as a method to extract and immunophenotype tumour lymphocytes in cutaneous T-cell lymphomas
    • Novelli M, Savoia P, Cambieri I, Ponti R, Comessatti A, Lisa F, Bernengo MG (2000) Collagenase digestion and mechanical disaggregation as a method to extract and immunophenotype tumour lymphocytes in cutaneous T-cell lymphomas. Clin Exp Dermatol 25:423-431
    • (2000) Clin Exp Dermatol , vol.25 , pp. 423-431
    • Novelli, M.1    Savoia, P.2    Cambieri, I.3    Ponti, R.4    Comessatti, A.5    Lisa, F.6    Bernengo, M.G.7
  • 60
    • 0031445536 scopus 로고    scopus 로고
    • Effects of formalin fixation and prolonged block storage on detection of hepatitis C virus RNA in liver tissue
    • Guerrero RB, Batts KP, Brandhagen DJ, Germer JJ, Perez RG, Persing DH (1997) Effects of formalin fixation and prolonged block storage on detection of hepatitis C virus RNA in liver tissue. Diagn Mol Pathol 6: 277-281
    • (1997) Diagn Mol Pathol , vol.6 , pp. 277-281
    • Guerrero, R.B.1    Batts, K.P.2    Brandhagen, D.J.3    Germer, J.J.4    Perez, R.G.5    Persing, D.H.6
  • 61
    • 0033623153 scopus 로고    scopus 로고
    • Laser capture microdissection-generated target sample for high-density oligonucleotide array hybridization
    • Ohyama H, Zhang X, Kohno Y, Alevizos M (2000) Laser capture microdissection-generated target sample for high-density oligonucleotide array hybridization. Biotechniques 29: 530-536
    • (2000) Biotechniques , vol.29 , pp. 530-536
    • Ohyama, H.1    Zhang, X.2    Kohno, Y.3    Alevizos, M.4
  • 62
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
    • Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162:156-159
    • (1987) Anal Biochem , vol.162 , pp. 156-159
    • Chomczynski, P.1    Sacchi, N.2
  • 63
    • 0013921597 scopus 로고
    • The in fluence of different fixatives and fixation methods on the ultrastructure of rat kidney proximal tubule cells. II. Effects of varying osmolality, ionic strength, buffer system and fixative concentration of glutaraldehyde solutions
    • Maunsbach AB (1966) The in fluence of different fixatives and fixation methods on the ultrastructure of rat kidney proximal tubule cells. II. Effects of varying osmolality, ionic strength, buffer system and fixative concentration of glutaraldehyde solutions. J Ultrastruct Res 15: 283-309
    • (1966) J Ultrastruct Res , vol.15 , pp. 283-309
    • Maunsbach, A.B.1
  • 64
    • 0036245192 scopus 로고    scopus 로고
    • Continuousspecimen-flow, high-throughput, 1-hour tissue processing. A system for rapid diagnostic tissue preparation
    • Morales AR, Essenfeld H, Essenfeld E, Duboue MC, Vincek V, Nadji M (2002) Continuousspecimen-flow, high-throughput, 1-hour tissue processing. A system for rapid diagnostic tissue preparation. Arch Pathol Lab Med 126: 583-590
    • (2002) Arch Pathol Lab Med , vol.126 , pp. 583-590
    • Morales, A.R.1    Essenfeld, H.2    Essenfeld, E.3    Duboue, M.C.4    Vincek, V.5    Nadji, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.