Impact of sample acquisition and linear amplification on gene expression profiling of lung adenocarcinoma: Laser capture micro-dissection cell-sampling versus bulk tissue-sampling

BMC Medical Genomics

Volumn 2, Issue , 2009, Pages

  Klee, Eric W ^a   Erdogan, Sibel ^b   Tillmans, Lori ^a   Kosari, Farhad ^a   Sun, Zhifu ^a   Wigle, Dennis A ^a   Yang, Ping ^a   Aubry, Marie C ^a   Vasmatzis, George ^a  

^a MAYO CLINIC   (United States)

^b MAYO GRADUATE SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; DOWN REGULATION; GENE EXPRESSION; GENE IDENTIFICATION; HUMAN; HUMAN TISSUE; LASER CAPTURE MICRODISSECTION; LUNG ADENOCARCINOMA; MICROARRAY ANALYSIS; PRIORITY JOURNAL;

EID: 64649094395     PISSN: None     EISSN: 17558794     Source Type: Journal    
DOI: 10.1186/1755-8794-2-13     Document Type: Article

References (18)

1. Gene expression profiling of primary tumor cell populations using laser capture microdissection, RNA transcript amplification, and GeneChip microarrays. VI Luzzi V Holtschlag MA Watson, Methods Mol Biol 2005 293 187 207 16028420
2. An overview of laser microdissection technologies. GI Murray, Acta Histochem 2007 109 171 176 17462720
3. Complementary techniques: laser capture microdissection - increasing specificity of gene expression profiling of cancer specimens. G Esposito, Adv Exp Med Biol 2007 593 54 65 17265716
4. Laser capture microdissection. V Espina J Milia G Wu S Cowherd LA Liotta, Methods Mol Bio 2006 319 213 229
5. Optimized procedures for microarray analysis of histological specimens processed by laser capture microdissection. JJ Upson R Stoyanova HS Cooper C Patriotis EA Ross B Boman ML Clapper AG Knudson A Bellacosa, J Cell Physiol 2004 201 366 373 15389559
6. Accurate and reproducible gene expression profiles from laser capture microdissection, transcript amplification, and high density oligonucleotide microarray analysis. V Luzzi M Mahadevappa R Raja JA Warrington MA Watson, J Mol Diagn 2003 5 9 14 12552074
7. Laser capture microdissection. MR Emmert-Buck RF Bonner PD Smith RF Chuaqui Z Zhuang SR Goldstein RA Weiss LA Liotta, Science 1996 274 998 1001 8875945
8. Reliability and reproducibility of gene expression measurements using amplified RNA from laser-microdissected primary breast tissue with oligonucleotide arrays. C King N Guo GM Frampton NP Gerry ME Lenburg CL Rosenberg, J Mol Diagn 2005 7 57 64 15681475
9. Optimization of laser capture microdissection and RNA amplification for gene expression profiling of prostate cancer. DM Kube CD Savci-Heijink AF Lamblin F Kosari G Vasmatzis JC Cheville DP Connelly GG Klee, BMC Mol Biol 2007 8 25 17376245
10. Biologically relevant effects of mRNA amplification on gene expression profiles. RI van Haaften B Schroen BJ Janssen A van Erk JJ Debets HJ Smeets JF Smits A van den Wijngaard YM Pinto CT Evelo, BMC Bioinformatics 2006 7 200 16608515
11. Liver gene expression profiles of rats treated with clofibric acid: comparison of whole liver and laser capture microdissected liver. C Michel C Desdouets B Sacre-Salem JC Gautier R Roberts E Boitier, Am J Pathol 2003 163 2191 2199 14633594
12. Macrodissection versus microdissection of rectal carcinoma: minor influence of stroma cells to tumor cell gene expression profiles. EC de Bruin S van de Pas EH Lips R van Eijk MM van der Zee M Lombaerts T van Wezel CA Marijnen JH van Krieken JP Medema CJ van de Velde PH Eilers LT Peltenburg, BMC Genomics 2005 6 142 16225673
13. Cancer statistics, 2007. A Jemal R Siegel E Ward T Murray J Xu MJ Thun, CA Cancer J Clin 2007 57 43 66 17237035
14. Reliability of t7-based mRNA linear amplification validated by gene expression analysis of human kidney cells using cDNA microarrays. M Rudnicki S Eder S Gabriele B Mayer T Meyer M Tonko G Mayer, Nerphron Experimental Neprohology 2004 97 e86 e95
15. Microdissection is essential for gene expression profiling of clinically resected cancer tissues. Y Sugiyama K Sugiyama Y Hirai F Akiyama K Hasumi, Am J Clin Pathol 2002 117 109 116 11789716
16. Laser microdissection and microarray analysis of breast tumors reveal ER-alpha related genes and pathways. F Yang JA Foekens J Yu AM Sieuwerts M Timmermans JG Klijn D Atkins Y Wang Y Jiang, Oncogene 2006 25 1413 1419 16261164
17. Integrative molecular concept modeling of prostate cancer progression. SA Tomlins R Mehra DR Rhodes X Cao L Wang SM Dhanasekaran S Kalyana-Sundaram JT Wei MA Rubin KJ Pienta RB Shah AM Chinnaiyan, Nat Genet 2007 39 41 51 17173048
18. Laser-capture microdissection in prostate cancer research: establishment and validation of a powerful tool for the assessment of tumour-stroma interactions. CJ Shukla CJ Pennington AC Riddick KK Sethia RY Ball DR Edwards, BJU Int 2008 101 765 774 18190638