SCOPUS 정보 검색 플랫폼

Protein Journal

Volumn 32, Issue 4, 2013, Pages 239-245

Protein hypersaline adaptation: Insight from amino acids with machine learning algorithms

(2) Zhang, Guangya a Ge, Huihua a

a HUAQIAO UNIVERSITY (China)

Author keywords

Halophiles; Halophilic adaptation; Linear model; Protein stability

Indexed keywords

AMINO ACID; PROTEIN;

ACCURACY; ADAPTATION; ALGORITHM; AMINO ACID COMPOSITION; ARTICLE; ARTIFICIAL NEURAL NETWORK; BIOCATALYST; LINEAR REGRESSION ANALYSIS; PARTIAL LEAST SQUARES REGRESSION; PREDICTION; PRINCIPAL COMPONENT ANALYSIS; RELIABILITY; SUPPORT VECTOR MACHINE;

EID: 84879498206 PISSN: 15723887 EISSN: 18758355 Source Type: Journal
DOI: 10.1007/s10930-013-9484-3 Document Type: Article

Times cited : (16)

References (29)

1
- 1942521068
- Electrostatic and hydrophobic interactions play a major role in the stability and refolding of halophilic proteins
- DOI 10.2174/0929866043478220
- Arakawa T, Tokunaqa M (2004) Protein Pept Lett 11:125-132 (Pubitemid 38504061)
- (2004) Protein and Peptide Letters , vol.11 , Issue.2 , pp. 125-132
- Arakawa, T.¹ Tokunaga, M.²

2
- 33646377150
- Protein arrays and pattern recognition: New tools to assist in the identification and management of autoimmune disease
- DOI 10.1016/j.autrev.2005.07.007, PII S1568997205001217, Genomic and Proteomic in Autoimmune Diagnostics
- Binder SR, Hixson C, Glossenger J (2006) Autoimmun Rev 5:234-241 (Pubitemid 43668460)
- (2006) Autoimmunity Reviews , vol.5 , Issue.4 , pp. 234-241
- Binder, S.R.¹ Hixson, C.² Glossenger, J.³

3
- 33645529310
- 10.1073/pnas.0508854103 1:CAS:528:DC%2BD28XjsVGmu7c%3D
- Britton KL, Baker PJ, Fisher M, Ruzheinikov S, Gilmour DJ, Bonete MJ, Ferrer J, Pire C, Esclapez J, Rice DW (2006) Proc Natl Acad Sci USA 103:4846-4851
- (2006) Proc Natl Acad Sci USA , vol.103 , pp. 4846-4851
- Britton, K.L.¹ Baker, P.J.² Fisher, M.³ Ruzheinikov, S.⁴ Gilmour, D.J.⁵ Bonete, M.J.⁶ Ferrer, J.⁷ Pire, C.⁸ Esclapez, J.⁹ Rice, D.W.¹⁰

4
- 0032981135
- 4 dihemic cytochrome domain association
- DOI 10.1006/jmbi.1999.2838
- Brown K, Nurizzo D, Besson S, Shepard W, Moura J, Moura I, Tegoni M, Cambillau C (1999) J Mol Biol 289:1017-1028 (Pubitemid 29306667)
- (1999) Journal of Molecular Biology , vol.289 , Issue.4 , pp. 1017-1028
- Brown, K.¹ Nurizzo, D.² Besson, S.³ Shepard, W.⁴ Moura, J.⁵ Moura, I.⁶ Tegoni, M.⁷ Cambillau, C.⁸

5
- 72449203319
- 10.2174/157016409789973707 1:CAS:528:DC%2BC3cXitFKi
- Chou KC (2009) Curr Proteomics 6:262-274
- (2009) Curr Proteomics , vol.6 , pp. 262-274
- Chou, K.C.¹

6
- 78349309121
- 10.1016/j.jmb.2010.09.055 1:CAS:528:DC%2BC3cXhsVaisL%2FE
- Coquelle N, Talon R, Juers DH, Girard E, Kahn R, Madern D (2010) J Mol Biol 404:493-505
- (2010) J Mol Biol , vol.404 , pp. 493-505
- Coquelle, N.¹ Talon, R.² Juers, D.H.³ Girard, E.⁴ Kahn, R.⁵ Madern, D.⁶

7
- 0032003768
- Pattern recognition of particle tracks using principal component analysis and artificial neural network
- DOI 10.1016/S0168-9002(97)01139-X, PII S016890029701139X
- Duttaa D, Mohanty AK, Choudhury RK, Chand P (1998) Nucl Instrum Meth in Phy Res A 404:445-454 (Pubitemid 128638837)
- (1998) Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment , vol.404 , Issue.2-3 , pp. 445-454
- Dutta, D.¹ Mohanty, A.K.² Choudhury, R.K.³ Chand, P.⁴

8
- 79955945598
- 10.1186/1746-1448-7-1 1:CAS:528:DC%2BC3MXms1Wjurs%3D
- Ebrahimie E, Ebrahimi M, Rahpayma NS, Ebrahimi M (2011) Saline Systems 7:1
- (2011) Saline Systems , vol.7 , pp. 1
- Ebrahimie, E.¹ Ebrahimi, M.² Rahpayma, N.S.³ Ebrahimi, M.⁴

9
- 0032563113
- Electrostatic contributions to the stability of halophilic proteins
- DOI 10.1006/jmbi.1998.1904
- Elcock AH, McCammon JA (1998) J Mol Biol 280:731-748 (Pubitemid 28336377)
- (1998) Journal of Molecular Biology , vol.280 , Issue.4 , pp. 731-748
- Elcock, A.H.¹ McCammon, J.A.²

10
- 0030586251
- 10.1111/j.1574-6968.1996.tb08363.x 1:CAS:528:DyaK28XktVOltLY%3D
- Ferrer J, Perez-Pomares F, Bonete MJ (1996) FEMS Microbil Lett 141:59-63
- (1996) FEMS Microbil Lett , vol.141 , pp. 59-63
- Ferrer, J.¹ Perez-Pomares, F.² Bonete, M.J.³

11
- 0037459217
- Unique amino acid composition of proteins in halophilic bacteria
- DOI 10.1016/S0022-2836(03)00150-5
- Fukuchi S, Yoshimune K, Wakayama M, Moriguchi M, Nishikawa K (2003) J Mol Biol 327:347-357 (Pubitemid 36298706)
- (2003) Journal of Molecular Biology , vol.327 , Issue.2 , pp. 347-357
- Fukuchi, S.¹ Yoshimune, K.² Wakayama, M.³ Moriguchi, M.⁴ Nishikawa, K.⁵

12
- 11144325691
- 10.1016/0003-2670(86)80028-9 1:CAS:528:DyaL28XmtVahs7c%3D
- Geladi P, Kowalski BR (1986) Anal Chim Acta 185:1-17
- (1986) Anal Chim Acta , vol.185 , pp. 1-17
- Geladi, P.¹ Kowalski, B.R.²

13
- 41049110433
- Functional discrimination of membrane proteins using machine learning techniques
- DOI 10.1186/1471-2105-9-135
- Gromiha MM, Yabuki Y (2008) BMC Bioinform 9:135 (Pubitemid 351420403)
- (2008) BMC Bioinformatics , vol.9 , pp. 135
- Gromiha, M.M.¹ Yabuki, Y.²

14
- 13844316617
- Toward an optimal procedure for PC-ANN model building: Prediction of the carcinogenic activity of a large set of drugs
- DOI 10.1021/ci049766z
- Hemmateenejad B, Safarpour MA, Miri R, Nesari N (2005) J Chem Inf Model 45:190-199 (Pubitemid 40736972)
- (2005) Journal of Chemical Information and Modeling , vol.45 , Issue.1 , pp. 190-199
- Hemmateenejad, B.¹ Safarpour, M.A.² Miri, R.³ Nesari, N.⁴

15
- 34247899119
- Structure and photoreaction of photoactive yellow protein, a structural prototype of the PAS domain superfamily
- DOI 10.1562/2006-02-28-IR-827
- Imamoto Y, Kataoka M (2007) Photochem Photobiol 83:40-49 (Pubitemid 46697222)
- (2007) Photochemistry and Photobiology , vol.83 , Issue.1 , pp. 40-49
- Imamoto, Y.¹ Kataoka, M.²

16
- 7244250182
- Data mining in bioinformatics using Weka
- DOI 10.1093/bioinformatics/bth261
- Inamdar NM, Ehrlich KC, Ehrlich M, Iannello RC, Frank E, Hall K, Trigg L, Holmes G, Witten IH (2004) Bioinformatics 20:2479-2481 (Pubitemid 39429925)
- (2004) Bioinformatics , vol.20 , Issue.15 , pp. 2479-2481
- Frank, E.¹ Hall, M.² Trigg, L.³ Holmes, G.⁴ Witten, I.H.⁵

17
- 12344297646
- Proteomics of Halophilic archaea
- DOI 10.1016/j.jchromb.2004.10.041, PII S1570023204008256, Proteomic Database Part III
- Joo WA, Kim CW (2005) J Chromatogr B Analyt Technol Biomed Life Sci 815:237-250 (Pubitemid 40126405)
- (2005) Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences , vol.815 , Issue.1-2 , pp. 237-250
- Joo, W.-A.¹ Kim, C.-W.²

18
- 84862143520
- 10.1186/2046-9063-8-4 1:CAS:528:DC%2BC38XlsVamsrc%3D
- Karan R, Capes MD, Dassarma S (2012) Aquat Biosyst 8:4
- (2012) Aquat Biosyst , vol.8 , pp. 4
- Karan, R.¹ Capes, M.D.² Dassarma, S.³

19
- 34548286930
- Haloadaptation: Insights from comparative modeling studies of halophilic archaeal DHFRs
- DOI 10.1016/j.ijbiomac.2007.06.005, PII S014181300700147X
- Kastritis PL, Papandreou NC, Hamodrakas SJ (2007) Int J Biol Macromol 41:447-453 (Pubitemid 47331635)
- (2007) International Journal of Biological Macromolecules , vol.41 , Issue.4 , pp. 447-453
- Kastritis, P.L.¹ Papandreou, N.C.² Hamodrakas, S.J.³

20
- 0034767491
- Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence
- DOI 10.1101/gr.190201
- Kennedy SP, Ng WV, Salzberg SL, Hood L, DasSarma S (2001) Genome Res 11:1641-1650 (Pubitemid 33040491)
- (2001) Genome Research , vol.11 , Issue.10 , pp. 1641-1650
- Kennedy, S.P.¹ Ng, W.V.² Salzberg, S.L.³ Hood, L.⁴ DasSarma, S.⁵

21
- 0016139829
- 1:CAS:528:DyaE2MXht1ehsA%3D%3D
- Lanyi JK (1974) Bacteriol Rev 38:272-290
- (1974) Bacteriol Rev , vol.38 , pp. 272-290
- Lanyi, J.K.¹

22
- 24044536613
- Pattern recognition techniques for the emerging field of bioinformatics: A review
- DOI 10.1016/j.patcog.2005.02.019, PII S0031320305001263
- Liew AWC, Yan H, Yang M (2005) Pattern Recog 38:2055-2073 (Pubitemid 41214645)
- (2005) Pattern Recognition , vol.38 , Issue.11 , pp. 2055-2073
- Liew, A.W.-C.¹ Yan, H.² Yang, M.³

23
- 4243468938
- 10.1021/cr9603744 1:CAS:528:DyaK2sXksV2kurk%3D
- Ma JC, Dougherty DA (1997) Chem Rev 97:1303-1324
- (1997) Chem Rev , vol.97 , pp. 1303-1324
- Ma, J.C.¹ Dougherty, D.A.²

24
- 0034734270
- Halophilic enzymes: Proteins with a grain of salt
- DOI 10.1016/S0301-4622(00)00126-5, PII S0301462200001265
- Mevarech M, Frolow F, Gloss LM (2000) Biophys Chem 86:155-164 (Pubitemid 30665604)
- (2000) Biophysical Chemistry , vol.86 , Issue.2-3 , pp. 155-164
- Mevarech, M.¹ Frolow, F.² Gloss, L.M.³

25
- 29144485325
- The genome of Salinibacter ruber: Convergence and gene exchange among hyperhalophilic bacteria and archaea
- DOI 10.1073/pnas.0509073102
- Mongodin EF, Nelson KE, Daugherty S, Deboy RT, Wister J, Khouri H, Weidman J, Walsh DA, Papke RT, Sanchez Perez G, Sharma AK, Nesbo CL, MacLeod D, Bapteste E, Doolittle WF, Charlebois RL, Legault B, Rodriguez-Valera F (2005) Proc Natl Acad Sci USA 102:18147-18152 (Pubitemid 41798516)
- (2005) Proceedings of the National Academy of Sciences of the United States of America , vol.102 , Issue.50 , pp. 18147-18152
- Mongodin, E.F.¹ Nelson, K.E.² Daugherty, S.³ DeBoy, R.T.⁴ Wister, J.⁵ Khouri, H.⁶ Weidman, J.⁷ Walsh, D.A.⁸ Papke, R.T.⁹ Perez, G.S.¹⁰ Sharma, A.K.¹¹ Nesbo, C.L.¹² MacLeod, D.¹³ Bapteste, E.¹⁴ Doolittle, W.F.¹⁵ Charlebois, R.L.¹⁶ Legault, B.¹⁷ Rodriguez-Valera, F.¹⁸

26
- 47149088683
- Molecular signature of hypersaline adaptation: Insights from genome and proteome composition of halophilic prokaryotes
- DOI 10.1186/gb-2008-9-4-r70
- Paul S, Bag SK, Das S, Harvill ET, Dutta C (2008) Genome Biol 9:R70 (Pubitemid 351974307)
- (2008) Genome Biology , vol.9 , Issue.4
- Paul, S.¹ Bag, S.K.² Das, S.³ Harvill, E.T.⁴ Dutta, C.⁵

27
- 24344503079
- Protein flexibility and rigidity predicted from sequence
- DOI 10.1002/prot.20587
- Schlessinger A, Rost B (2005) Proteins 61:115-126 (Pubitemid 41262922)
- (2005) Proteins: Structure, Function and Genetics , vol.61 , Issue.1 , pp. 115-126
- Schlessinger, A.¹ Rost, B.²

28
- 84055213697
- 10.1186/1472-6807-11-50 1:CAS:528:DC%2BC38XkvVyjsb4%3D
- Siglioccolo A, Paiardini A, Piscitelli M, Pascarella S (2011) BMC Structur Biol 11:50
- (2011) BMC Structur Biol , vol.11 , pp. 50
- Siglioccolo, A.¹ Paiardini, A.² Piscitelli, M.³ Pascarella, S.⁴

29
- 50049123899
- 10.1110/ps.035725.108 1:CAS:528:DC%2BD1cXhtV2rsbzN
- Tokunaga H, Arakawa T, Tokunaga M (2008) Protein Sci 17:1603-1610
- (2008) Protein Sci , vol.17 , pp. 1603-1610
- Tokunaga, H.¹ Arakawa, T.² Tokunaga, M.³

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.