Haloadaptation: Insights from comparative modeling studies of halophilic archaeal DHFRs

International Journal of Biological Macromolecules

Volumn 41, Issue 4, 2007, Pages 447-453

  Kastritis, Panagiotis L ^a   Papandreou, Nikos C ^a   Hamodrakas, Stavros J ^a  

^a UNIVERSITY OF ATHENS   (Greece)

Author keywords

Archaea; DHFR; Extremophiles; Haloadaptation; Halophiles; Homology (comparative) modeling

Indexed keywords

ARCHAEAL PROTEIN; DIHYDROFOLATE REDUCTASE;

AMINO ACID COMPOSITION; ARCHAEBACTERIUM; ARTICLE; CRYSTAL STRUCTURE; HALOBACTERIUM; HALOPHILIC ARCHAEON; MODEL; NONHUMAN; SEQUENCE HOMOLOGY;

ARCHAEA;

EID: 34548286930     PISSN: 01418130     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijbiomac.2007.06.005     Document Type: Article

References (37)

1. Pieper U., Kapadia G., Mevarech M., and Herzberg O. Structure 6 (1998) 75
2. Blakley R.L. Adv. Enzymol. Relat. Areas Mol. Biol. 70 (1995) 23
3. Richard S.B., Madern D., Garcin E., and Zaccai G. Biochemistry 39 (2000) 992
4. Mevarech M., Frolow F., and Gloss L.M. Biophys. Chem. 86 (2000) 155
5. Kouranov A., Xie L., de la Cruz J., Chen L., Westbrook J., Bourne P.E., and Berman H.M. Nucleic Acids Res. 34 (2006) D302
6. DeLano W.L. The PyMOL Molecular Graphics System (2002), DeLano Scientific, San Carlos, CA, US. http://www.pymol.org/ (http://www.pymol.org)
7. Shindyalov I.N., and Bourne P.E. Protein Eng. 11 (1998) 739
8. Bairoch A., Apweiler R., Wu C.H., Barker W.C., Boeckmann B., Ferro S., Gasteiger E., Huang H., Lopez R., Magrane M., Martin M.J., Natale D.A., O'Donovan C., Redaschi N., and Yeh L.S. Nucleic Acids Res. 33 (2005) D154
9. Kumar S., Tamura K., and Nei M. Brief Bioinform. 5 (2004) 150
10. Eisenberg D., Schwarz E., Komarony M., and Wall R. J. Mol. Biol. 179 (1984) 125
11. Eisenberg D., Weiss R.M., Terwilliger T.C., and Wilcox W. Faraday Symp. Chem. Soc. 17 (1982) 109
12. Pandit S.B., Zhang Y., and Skolnick J. Biophys. J. 91 (2006) 4180
13. Skolnick J., Kihara D., and Zhang Y. Proteins 56 (2004) 502
14. Zhang Y., and Skolnick J. Proc. Natl. Acad. Sci. USA 101 (2004) 7594
15. Sali A., and Blundell T. J. Mol. Biol. 234 (1993) 779
16. Thompson J.D., Higgins D.G., and Gibson T.J. Nucleic Acids Res. 22 (1994) 4673
17. Ponder J.W., and Case D.A. Adv. Prot. Chem. 66 (2003) 27
18. Foloppe N., and MacKerell Jr. A.D. J. Comput. Chem. 21 (2000) 86
19. Hooft R.W., Vriend G., Sander C., and Abola E.E. Nature 381 (1996) 272
20. Laskowski R.A., MacArthur M.W., Moss D.S., and Thornton J.M. J. Appl. Cryst. 26 (1993) 283
21. Jones T.A., Zou J.Y., Cowan S.W., and Kjeldgaard M. Acta Cryst. A 47 (1991) 110
22. Kabsch W., and Sander C. Biopolymers 22 12 (1983) 2577
23. Connolly M.L. Science 221 (1983) 709
24. Nicholls A., Sharp K.A., and Honig B. Proteins 11 (1991) 281
25. Vriend G. J. Mol. Graph. 8 (1990) 52
26. Bolhuis H., Palm P., Wende A., Falb M., Rampp M., Rodriguez-Valera F., Pfeiffer F., and Oesterhelt D. BMC Genomics 7 (2006) 169
27. Wright D.B., Banks D.D., Lohman J.R., Hilsenbeck J.L., and Gloss L.M. J. Mol. Biol. 323 (2002) 327
28. Britton K.L., Stillman T.J., Yip K.S.P., Forterre P., Engel P.C., and Rice D.W. J. Biol. Chem. 273 (1998) 9023
29. Thanki N., Thornton J.M., and Goodfellow J.M. J. Mol. Biol. 202 (1988) 637
30. Lanyi J.K. Bacteriol. Rev. 38 (1974) 272
31. Dym O., Mevarech M., and Sussman J.L. Science 267 (1995) 1344
32. Frolow F., Harel M., Sussman J.L., Mevarech M., and Shoham M. Nat. Struct. Biol. 3 (1996) 452
33. Britton K.L., Baker P.J., Fisher M., Ruzheinikov S., Gilmour D.J., Bonete M., Ferrer J., Pire C., Esclapez J., and Rice D.W. Proc. Natl. Acad. Sci. USA 103 (2006) 4846
34. Madern D., Pfister C., and Zaccai G. Eur. J. Biochem. 230 (1995) 1088
35. Madern D., Ebel C., Mevarech M., Richard S.B., Pfister C., and Zaccai G. Biochemistry 39 (2000) 1001
36. Madern D., Ebel C., and Zaccai G. Extremophiles 4 (2000) 91
37. Böhm G., and Jaenicke R. Prot. Eng. 7 (1994) 213