메뉴 건너뛰기




Volumn 12, Issue 6, 2013, Pages 2582-2596

Multiple reaction monitoring of multiple low-abundance transcription factors in whole lung cancer cell lysates

Author keywords

doxorubicin; drug resistance; MRM; TF; transition parameters

Indexed keywords

DOXORUBICIN; MESSENGER RNA; SMAD4 PROTEIN; STAT1 PROTEIN; STAT2 PROTEIN; TRANSCRIPTION FACTOR;

EID: 84879356633     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr3011414     Document Type: Article
Times cited : (12)

References (75)
  • 1
    • 0000380542 scopus 로고
    • Immunoassay of endogenous plasma insulin in man
    • Yalow, R. S.; Berson, S. A. Immunoassay of endogenous plasma insulin in man J. Clin. Invest. 1960, 39, 1157-75
    • (1960) J. Clin. Invest. , vol.39 , pp. 1157-1175
    • Yalow, R.S.1    Berson, S.A.2
  • 2
    • 28044462393 scopus 로고    scopus 로고
    • Enzyme immunoassay (EIA)/enzyme-linked immunosorbent assay (ELISA)
    • Lequin, R. M. Enzyme immunoassay (EIA)/enzyme-linked immunosorbent assay (ELISA) Clin. Chem. 2005, 51 (12) 2415-8
    • (2005) Clin. Chem. , vol.51 , Issue.12 , pp. 2415-2418
    • Lequin, R.M.1
  • 3
    • 0015116634 scopus 로고
    • Enzyme-linked immunosorbent assay (ELISA). Quantitative assay of immunoglobulin G
    • Engvall, E.; Perlmann, P. Enzyme-linked immunosorbent assay (ELISA). Quantitative assay of immunoglobulin G Immunochemistry 1971, 8 (9) 871-4
    • (1971) Immunochemistry , vol.8 , Issue.9 , pp. 871-874
    • Engvall, E.1    Perlmann, P.2
  • 4
    • 0023718613 scopus 로고
    • Time-resolved fluorescence using a europium chelate of 4,7-bis-(chlorosulfophenyl)-1,10-phenanthroline-2,9-dicarboxylic acid (BCPDA). Labeling procedures and applications in immunoassays
    • Diamandis, E. P.; Morton, R. C. Time-resolved fluorescence using a europium chelate of 4,7-bis-(chlorosulfophenyl)-1,10-phenanthroline-2,9- dicarboxylic acid (BCPDA). Labeling procedures and applications in immunoassays J. Immunol. Methods 1988, 112 (1) 43-52
    • (1988) J. Immunol. Methods , vol.112 , Issue.1 , pp. 43-52
    • Diamandis, E.P.1    Morton, R.C.2
  • 5
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • Aebersold, R.; Mann, M. Mass spectrometry-based proteomics Nature 2003, 422 (6928) 198-207
    • (2003) Nature , vol.422 , Issue.6928 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 6
    • 84861341631 scopus 로고    scopus 로고
    • Expression profiling of more than 3500 proteins of MSS-type colorectal cancer by stable isotope labeling and mass spectrometry
    • Kang, U. B.; Yeom, J.; Kim, H. J.; Kim, H.; Lee, C. Expression profiling of more than 3500 proteins of MSS-type colorectal cancer by stable isotope labeling and mass spectrometry J. Proteomics 2012, 75 (10) 3050-62
    • (2012) J. Proteomics , vol.75 , Issue.10 , pp. 3050-3062
    • Kang, U.B.1    Yeom, J.2    Kim, H.J.3    Kim, H.4    Lee, C.5
  • 7
    • 77954366021 scopus 로고    scopus 로고
    • Quantitative analysis of mTRAQ-labeled proteome using full MS scans
    • Kang, U. B.; Yeom, J.; Kim, H.; Lee, C. Quantitative analysis of mTRAQ-labeled proteome using full MS scans J. Proteome Res. 2010, 9 (7) 3750-8
    • (2010) J. Proteome Res. , vol.9 , Issue.7 , pp. 3750-3758
    • Kang, U.B.1    Yeom, J.2    Kim, H.3    Lee, C.4
  • 8
    • 33751413316 scopus 로고    scopus 로고
    • LC-MS/MS analysis of apical and basolateral plasma membranes of rat renal collecting duct cells
    • Yu, M. J.; Pisitkun, T.; Wang, G.; Shen, R. F.; Knepper, M. A. LC-MS/MS analysis of apical and basolateral plasma membranes of rat renal collecting duct cells Mol. Cell. Proteomics 2006, 5 (11) 2131-45
    • (2006) Mol. Cell. Proteomics , vol.5 , Issue.11 , pp. 2131-2145
    • Yu, M.J.1    Pisitkun, T.2    Wang, G.3    Shen, R.F.4    Knepper, M.A.5
  • 9
    • 77949424965 scopus 로고    scopus 로고
    • Mining of serum glycoproteins by an indirect approach using cell line secretome
    • Ahn, Y.; Kang, U. B.; Kim, J.; Lee, C. Mining of serum glycoproteins by an indirect approach using cell line secretome Mol. Cells 2010, 29 (2) 123-30
    • (2010) Mol. Cells , vol.29 , Issue.2 , pp. 123-130
    • Ahn, Y.1    Kang, U.B.2    Kim, J.3    Lee, C.4
  • 10
    • 76149113930 scopus 로고    scopus 로고
    • Deconvolution of mixture spectra from ion-trap data-independent- acquisition tandem mass spectrometry
    • Bern, M.; Finney, G.; Hoopmann, M. R.; Merrihew, G.; Toth, M. J.; MacCoss, M. J. Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry Anal. Chem. 2010, 82 (3) 833-41
    • (2010) Anal. Chem. , vol.82 , Issue.3 , pp. 833-841
    • Bern, M.1    Finney, G.2    Hoopmann, M.R.3    Merrihew, G.4    Toth, M.J.5    MacCoss, M.J.6
  • 11
    • 33645721632 scopus 로고    scopus 로고
    • Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins
    • Anderson, L.; Hunter, C. L. Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins Mol. Cell. Proteomics 2006, 5 (4) 573-88
    • (2006) Mol. Cell. Proteomics , vol.5 , Issue.4 , pp. 573-588
    • Anderson, L.1    Hunter, C.L.2
  • 13
    • 33645813378 scopus 로고    scopus 로고
    • Mass spectrometry and protein analysis
    • Domon, B.; Aebersold, R. Mass spectrometry and protein analysis Science 2006, 312 (5771) 212-7
    • (2006) Science , vol.312 , Issue.5771 , pp. 212-217
    • Domon, B.1    Aebersold, R.2
  • 20
    • 78650355102 scopus 로고    scopus 로고
    • Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry
    • Maclean, B.; Tomazela, D. M.; Abbatiello, S. E.; Zhang, S.; Whiteaker, J. R.; Paulovich, A. G.; Carr, S. A.; Maccoss, M. J. Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry Anal. Chem. 2010, 82 (24) 10116-24
    • (2010) Anal. Chem. , vol.82 , Issue.24 , pp. 10116-10124
    • MacLean, B.1    Tomazela, D.M.2    Abbatiello, S.E.3    Zhang, S.4    Whiteaker, J.R.5    Paulovich, A.G.6    Carr, S.A.7    MacCoss, M.J.8
  • 21
    • 84879394723 scopus 로고    scopus 로고
    • American Cancer Society, Cancer Facts & Figures 2011. (accessed April 5, 2012)
    • American Cancer Society, Cancer Facts & Figures 2011. http://www.cancer.org/Research/CancerFactsFigures/CancerFactsFigures/ cancer-facts-figures-2011 (accessed April 5, 2012).
  • 23
    • 84879408689 scopus 로고    scopus 로고
    • University of Nebraska, N. C. I. N. A Phase I Study ofWeekly Doxorubicin and Oral Topotecan for Patients With Relapsed orRefractory Small Cell Lung Cancer (SCLC). (accessed April 5, 2012)
    • University of Nebraska, N. C. I. N., A Phase I Study ofWeekly Doxorubicin and Oral Topotecan for Patients With Relapsed orRefractory Small Cell Lung Cancer (SCLC). http://clinicaltrials.gov/ct2/show/NCT00856037 (accessed April 5, 2012).
  • 24
    • 15144354767 scopus 로고    scopus 로고
    • Co-transfection of MDR1 and MRP antisense RNAs abolishes the drug resistance in multidrug-resistant human lung cancer cells
    • Gao, Z.; Fields, J. Z.; Boman, B. M. Co-transfection of MDR1 and MRP antisense RNAs abolishes the drug resistance in multidrug-resistant human lung cancer cells Anticancer Res. 1998, 18 (4C) 3073-6
    • (1998) Anticancer Res. , vol.18 , Issue.4 , pp. 3073-3076
    • Gao, Z.1    Fields, J.Z.2    Boman, B.M.3
  • 25
    • 33746822732 scopus 로고    scopus 로고
    • Glutathione S-transferases as antioxidant enzymes: Small cell lung cancer (H69) cells transfected with hGSTA1 resist doxorubicin-induced apoptosis
    • Sharma, A.; Patrick, B.; Li, J.; Sharma, R.; Jeyabal, P. V. S.; Reddy, P. M. R. V.; Awasthi, S.; Awasthi, Y. C. Glutathione S-transferases as antioxidant enzymes: Small cell lung cancer (H69) cells transfected with hGSTA1 resist doxorubicin-induced apoptosis Arch. Biochem. Biophys. 2006, 452 (2) 165-73
    • (2006) Arch. Biochem. Biophys. , vol.452 , Issue.2 , pp. 165-173
    • Sharma, A.1    Patrick, B.2    Li, J.3    Sharma, R.4    Jeyabal, P.V.S.5    Reddy, P.M.R.V.6    Awasthi, S.7    Awasthi, Y.C.8
  • 26
    • 0028283890 scopus 로고
    • Acquired resistance to cisplatin and doxorubicin in a small cell lung cancer cell line is correlated to elevated expression of glutathione-linked detoxification enzymes
    • Hao, X. Y.; Bergh, J.; Brodin, O.; Hellman, U.; Mannervik, B. Acquired resistance to cisplatin and doxorubicin in a small cell lung cancer cell line is correlated to elevated expression of glutathione-linked detoxification enzymes Carcinogenesis 1994, 15 (6) 1167-73
    • (1994) Carcinogenesis , vol.15 , Issue.6 , pp. 1167-1173
    • Hao, X.Y.1    Bergh, J.2    Brodin, O.3    Hellman, U.4    Mannervik, B.5
  • 27
    • 0011331810 scopus 로고
    • Increased resistance to doxorubicin in human non-small-cell lung carcinomas with metallothionein expression
    • Mattern, J.; Volm, M. Increased resistance to doxorubicin in human non-small-cell lung carcinomas with metallothionein expression Int. J. Oncol. 1992, 1 (6) 687-9
    • (1992) Int. J. Oncol. , vol.1 , Issue.6 , pp. 687-689
    • Mattern, J.1    Volm, M.2
  • 30
    • 0023109951 scopus 로고
    • Deamidation, isomerization, and racemization at asparaginyl and aspartyl residues in peptides. Succinimide-linked reactions that contribute to protein degradation
    • Geiger, T.; Clarke, S. Deamidation, isomerization, and racemization at asparaginyl and aspartyl residues in peptides. Succinimide-linked reactions that contribute to protein degradation J. Biol. Chem. 1987, 262 (2) 785-94
    • (1987) J. Biol. Chem. , vol.262 , Issue.2 , pp. 785-794
    • Geiger, T.1    Clarke, S.2
  • 31
    • 84863080780 scopus 로고    scopus 로고
    • Proteomic approach reveals FKBP4 and S100A9 as potential prediction markers of therapeutic response to neoadjuvant chemotherapy in patients with breast cancer
    • Yang, W. S.; Moon, H. G.; Kim, H. S.; Choi, E. J.; Yu, M. H.; Noh, D. Y.; Lee, C. Proteomic approach reveals FKBP4 and S100A9 as potential prediction markers of therapeutic response to neoadjuvant chemotherapy in patients with breast cancer J. Proteome Res. 2012, 11 (2) 1078-88
    • (2012) J. Proteome Res. , vol.11 , Issue.2 , pp. 1078-1088
    • Yang, W.S.1    Moon, H.G.2    Kim, H.S.3    Choi, E.J.4    Yu, M.H.5    Noh, D.Y.6    Lee, C.7
  • 33
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar, R.; Domrachev, M.; Lash, A. E. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository Nucleic Acids Res. 2002, 30 (1) 207-10
    • (2002) Nucleic Acids Res. , vol.30 , Issue.1 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 37
    • 77950571596 scopus 로고    scopus 로고
    • Direct transfer of alpha-synuclein from neuron to astroglia causes inflammatory responses in synucleinopathies
    • Lee, H. J.; Suk, J. E.; Patrick, C.; Bae, E. J.; Cho, J. H.; Rho, S.; Hwang, D.; Masliah, E.; Lee, S. J. Direct transfer of alpha-synuclein from neuron to astroglia causes inflammatory responses in synucleinopathies J. Biol. Chem. 2010, 285 (12) 9262-72
    • (2010) J. Biol. Chem. , vol.285 , Issue.12 , pp. 9262-9272
    • Lee, H.J.1    Suk, J.E.2    Patrick, C.3    Bae, E.J.4    Cho, J.H.5    Rho, S.6    Hwang, D.7    Masliah, E.8    Lee, S.J.9
  • 39
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da, W.; Sherman, B. T.; Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nat. Protoc. 2009, 4 (1) 44-57
    • (2009) Nat. Protoc. , vol.4 , Issue.1 , pp. 44-57
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 52
    • 0037068329 scopus 로고    scopus 로고
    • DNA methylation analysis: A powerful new tool for lung cancer diagnosis
    • Tsou, J. A.; Hagen, J. A.; Carpenter, C. L.; Laird-Offringa, I. A. DNA methylation analysis: a powerful new tool for lung cancer diagnosis Oncogene 2002, 21 (35) 5450-61
    • (2002) Oncogene , vol.21 , Issue.35 , pp. 5450-5461
    • Tsou, J.A.1    Hagen, J.A.2    Carpenter, C.L.3    Laird-Offringa, I.A.4
  • 53
    • 84879345507 scopus 로고    scopus 로고
    • SABiosciences, a. Q. c. Functional Gene Grouping, Human Lung Cancer DNA Methylation PCR Array. (accessed April 5, 2012)
    • SABiosciences, a. Q. c., Functional Gene Grouping, Human Lung Cancer DNA Methylation PCR Array. http://www.sabiosciences.com/dna-methylation-product/ HTML/MEAH-3040A.html#function (accessed April 5, 2012).
  • 57
    • 1542375346 scopus 로고    scopus 로고
    • Two prognostically significant subtypes of high-grade lung neuroendocrine tumours independent of small-cell and large-cell neuroendocrine carcinomas identified by gene expression profiles
    • Jones, M. H.; Virtanen, C.; Honjoh, D.; Miyoshi, T.; Satoh, Y.; Okumura, S.; Nakagawa, K.; Nomura, H.; Ishikawa, Y. Two prognostically significant subtypes of high-grade lung neuroendocrine tumours independent of small-cell and large-cell neuroendocrine carcinomas identified by gene expression profiles Lancet 2004, 363 (9411) 775-81
    • (2004) Lancet , vol.363 , Issue.9411 , pp. 775-781
    • Jones, M.H.1    Virtanen, C.2    Honjoh, D.3    Miyoshi, T.4    Satoh, Y.5    Okumura, S.6    Nakagawa, K.7    Nomura, H.8    Ishikawa, Y.9
  • 60
    • 34247170626 scopus 로고    scopus 로고
    • Proteomics-based identification of secreted protein dihydrodiol dehydrogenase as a novel serum markers of non-small cell lung cancer
    • Huang, L. J.; Chen, S. X.; Huang, Y.; Luo, W. J.; Jiang, H. H.; Hu, Q. H.; Zhang, P. F.; Yi, H. Proteomics-based identification of secreted protein dihydrodiol dehydrogenase as a novel serum markers of non-small cell lung cancer Lung Cancer 2006, 54 (1) 87-94
    • (2006) Lung Cancer , vol.54 , Issue.1 , pp. 87-94
    • Huang, L.J.1    Chen, S.X.2    Huang, Y.3    Luo, W.J.4    Jiang, H.H.5    Hu, Q.H.6    Zhang, P.F.7    Yi, H.8
  • 61
    • 75149133225 scopus 로고    scopus 로고
    • Identification of five candidate lung cancer biomarkers by proteomics analysis of conditioned media of four lung cancer cell lines
    • Planque, C.; Kulasingam, V.; Smith, C. R.; Reckamp, K.; Goodglick, L.; Diamandis, E. P. Identification of five candidate lung cancer biomarkers by proteomics analysis of conditioned media of four lung cancer cell lines Mol. Cell. Proteomics 2009, 8 (12) 2746-58
    • (2009) Mol. Cell. Proteomics , vol.8 , Issue.12 , pp. 2746-2758
    • Planque, C.1    Kulasingam, V.2    Smith, C.R.3    Reckamp, K.4    Goodglick, L.5    Diamandis, E.P.6
  • 63
    • 34347209975 scopus 로고    scopus 로고
    • Determination of metastasis-associated proteins in non-small cell lung cancer by comparative proteomic analysis
    • Tian, T.; Hao, J.; Xu, A.; Luo, C.; Liu, C.; Huang, L.; Xiao, X.; He, D. Determination of metastasis-associated proteins in non-small cell lung cancer by comparative proteomic analysis Cancer Sci. 2007, 98 (8) 1265-74
    • (2007) Cancer Sci. , vol.98 , Issue.8 , pp. 1265-1274
    • Tian, T.1    Hao, J.2    Xu, A.3    Luo, C.4    Liu, C.5    Huang, L.6    Xiao, X.7    He, D.8
  • 64
    • 23944498611 scopus 로고    scopus 로고
    • Proteomic profiling of human pleural effusion using two-dimensional nano liquid chromatography tandem mass spectrometry
    • Tyan, Y. C.; Wu, H. Y.; Lai, W. W.; Su, W. C.; Liao, P. C. Proteomic profiling of human pleural effusion using two-dimensional nano liquid chromatography tandem mass spectrometry J. Proteome Res. 2005, 4 (4) 1274-86
    • (2005) J. Proteome Res. , vol.4 , Issue.4 , pp. 1274-1286
    • Tyan, Y.C.1    Wu, H.Y.2    Lai, W.W.3    Su, W.C.4    Liao, P.C.5
  • 67
  • 70
    • 77950095763 scopus 로고    scopus 로고
    • TGFbeta-mediated upregulation of hepatic miR-181b promotes hepatocarcinogenesis by targeting TIMP3
    • Wang, B.; Hsu, S. H.; Majumder, S.; Kutay, H.; Huang, W.; Jacob, S. T.; Ghoshal, K. TGFbeta-mediated upregulation of hepatic miR-181b promotes hepatocarcinogenesis by targeting TIMP3 Oncogene 2010, 29 (12) 1787-97
    • (2010) Oncogene , vol.29 , Issue.12 , pp. 1787-1797
    • Wang, B.1    Hsu, S.H.2    Majumder, S.3    Kutay, H.4    Huang, W.5    Jacob, S.T.6    Ghoshal, K.7
  • 71
    • 34848817968 scopus 로고    scopus 로고
    • Acetylation-dependent signal transduction for type i interferon receptor
    • Tang, X.; Gao, J. S.; Guan, Y. J.; McLane, K. E.; Yuan, Z. L.; Ramratnam, B.; Chin, Y. E. Acetylation-dependent signal transduction for type I interferon receptor Cell 2007, 131 (1) 93-105
    • (2007) Cell , vol.131 , Issue.1 , pp. 93-105
    • Tang, X.1    Gao, J.S.2    Guan, Y.J.3    McLane, K.E.4    Yuan, Z.L.5    Ramratnam, B.6    Chin, Y.E.7
  • 74
    • 84868327851 scopus 로고    scopus 로고
    • Large-scale quantitative assessment of different in-solution protein digestion protocols reveals superior cleavage efficiency of tandem Lys-C/trypsin proteolysis over trypsin digestion
    • Glatter, T.; Ludwig, C.; Ahrne, E.; Aebersold, R.; Heck, A. J.; Schmidt, A. Large-scale quantitative assessment of different in-solution protein digestion protocols reveals superior cleavage efficiency of tandem Lys-C/trypsin proteolysis over trypsin digestion J. Proteome Res. 2012, 11 (11) 5145-56
    • (2012) J. Proteome Res. , vol.11 , Issue.11 , pp. 5145-5156
    • Glatter, T.1    Ludwig, C.2    Ahrne, E.3    Aebersold, R.4    Heck, A.J.5    Schmidt, A.6
  • 75
    • 84855433177 scopus 로고    scopus 로고
    • Rapid and efficient protein enzymatic digestion: An experimental comparison
    • Dycka, F.; Bobal, P.; Mazanec, K.; Bobalova, J. Rapid and efficient protein enzymatic digestion: an experimental comparison Electrophoresis 2012, 33 (2) 288-95
    • (2012) Electrophoresis , vol.33 , Issue.2 , pp. 288-295
    • Dycka, F.1    Bobal, P.2    Mazanec, K.3    Bobalova, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.