-
1
-
-
0000380542
-
Immunoassay of endogenous plasma insulin in man
-
Yalow, R. S.; Berson, S. A. Immunoassay of endogenous plasma insulin in man J. Clin. Invest. 1960, 39, 1157-75
-
(1960)
J. Clin. Invest.
, vol.39
, pp. 1157-1175
-
-
Yalow, R.S.1
Berson, S.A.2
-
2
-
-
28044462393
-
Enzyme immunoassay (EIA)/enzyme-linked immunosorbent assay (ELISA)
-
Lequin, R. M. Enzyme immunoassay (EIA)/enzyme-linked immunosorbent assay (ELISA) Clin. Chem. 2005, 51 (12) 2415-8
-
(2005)
Clin. Chem.
, vol.51
, Issue.12
, pp. 2415-2418
-
-
Lequin, R.M.1
-
3
-
-
0015116634
-
Enzyme-linked immunosorbent assay (ELISA). Quantitative assay of immunoglobulin G
-
Engvall, E.; Perlmann, P. Enzyme-linked immunosorbent assay (ELISA). Quantitative assay of immunoglobulin G Immunochemistry 1971, 8 (9) 871-4
-
(1971)
Immunochemistry
, vol.8
, Issue.9
, pp. 871-874
-
-
Engvall, E.1
Perlmann, P.2
-
4
-
-
0023718613
-
Time-resolved fluorescence using a europium chelate of 4,7-bis-(chlorosulfophenyl)-1,10-phenanthroline-2,9-dicarboxylic acid (BCPDA). Labeling procedures and applications in immunoassays
-
Diamandis, E. P.; Morton, R. C. Time-resolved fluorescence using a europium chelate of 4,7-bis-(chlorosulfophenyl)-1,10-phenanthroline-2,9- dicarboxylic acid (BCPDA). Labeling procedures and applications in immunoassays J. Immunol. Methods 1988, 112 (1) 43-52
-
(1988)
J. Immunol. Methods
, vol.112
, Issue.1
, pp. 43-52
-
-
Diamandis, E.P.1
Morton, R.C.2
-
5
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R.; Mann, M. Mass spectrometry-based proteomics Nature 2003, 422 (6928) 198-207
-
(2003)
Nature
, vol.422
, Issue.6928
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
6
-
-
84861341631
-
Expression profiling of more than 3500 proteins of MSS-type colorectal cancer by stable isotope labeling and mass spectrometry
-
Kang, U. B.; Yeom, J.; Kim, H. J.; Kim, H.; Lee, C. Expression profiling of more than 3500 proteins of MSS-type colorectal cancer by stable isotope labeling and mass spectrometry J. Proteomics 2012, 75 (10) 3050-62
-
(2012)
J. Proteomics
, vol.75
, Issue.10
, pp. 3050-3062
-
-
Kang, U.B.1
Yeom, J.2
Kim, H.J.3
Kim, H.4
Lee, C.5
-
7
-
-
77954366021
-
Quantitative analysis of mTRAQ-labeled proteome using full MS scans
-
Kang, U. B.; Yeom, J.; Kim, H.; Lee, C. Quantitative analysis of mTRAQ-labeled proteome using full MS scans J. Proteome Res. 2010, 9 (7) 3750-8
-
(2010)
J. Proteome Res.
, vol.9
, Issue.7
, pp. 3750-3758
-
-
Kang, U.B.1
Yeom, J.2
Kim, H.3
Lee, C.4
-
8
-
-
33751413316
-
LC-MS/MS analysis of apical and basolateral plasma membranes of rat renal collecting duct cells
-
Yu, M. J.; Pisitkun, T.; Wang, G.; Shen, R. F.; Knepper, M. A. LC-MS/MS analysis of apical and basolateral plasma membranes of rat renal collecting duct cells Mol. Cell. Proteomics 2006, 5 (11) 2131-45
-
(2006)
Mol. Cell. Proteomics
, vol.5
, Issue.11
, pp. 2131-2145
-
-
Yu, M.J.1
Pisitkun, T.2
Wang, G.3
Shen, R.F.4
Knepper, M.A.5
-
9
-
-
77949424965
-
Mining of serum glycoproteins by an indirect approach using cell line secretome
-
Ahn, Y.; Kang, U. B.; Kim, J.; Lee, C. Mining of serum glycoproteins by an indirect approach using cell line secretome Mol. Cells 2010, 29 (2) 123-30
-
(2010)
Mol. Cells
, vol.29
, Issue.2
, pp. 123-130
-
-
Ahn, Y.1
Kang, U.B.2
Kim, J.3
Lee, C.4
-
10
-
-
76149113930
-
Deconvolution of mixture spectra from ion-trap data-independent- acquisition tandem mass spectrometry
-
Bern, M.; Finney, G.; Hoopmann, M. R.; Merrihew, G.; Toth, M. J.; MacCoss, M. J. Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry Anal. Chem. 2010, 82 (3) 833-41
-
(2010)
Anal. Chem.
, vol.82
, Issue.3
, pp. 833-841
-
-
Bern, M.1
Finney, G.2
Hoopmann, M.R.3
Merrihew, G.4
Toth, M.J.5
MacCoss, M.J.6
-
11
-
-
33645721632
-
Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins
-
Anderson, L.; Hunter, C. L. Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins Mol. Cell. Proteomics 2006, 5 (4) 573-88
-
(2006)
Mol. Cell. Proteomics
, vol.5
, Issue.4
, pp. 573-588
-
-
Anderson, L.1
Hunter, C.L.2
-
12
-
-
38349037650
-
Isotope-labeled protein standards: Toward absolute quantitative proteomics
-
Brun, V.; Dupuis, A.; Adrait, A.; Marcellin, M.; Thomas, D.; Court, M.; Vandenesch, F.; Garin, J. Isotope-labeled protein standards: toward absolute quantitative proteomics Mol. Cell. Proteomics 2007, 6 (12) 2139-49
-
(2007)
Mol. Cell. Proteomics
, vol.6
, Issue.12
, pp. 2139-2149
-
-
Brun, V.1
Dupuis, A.2
Adrait, A.3
Marcellin, M.4
Thomas, D.5
Court, M.6
Vandenesch, F.7
Garin, J.8
-
13
-
-
33645813378
-
Mass spectrometry and protein analysis
-
Domon, B.; Aebersold, R. Mass spectrometry and protein analysis Science 2006, 312 (5771) 212-7
-
(2006)
Science
, vol.312
, Issue.5771
, pp. 212-217
-
-
Domon, B.1
Aebersold, R.2
-
14
-
-
74049131716
-
High-throughput generation of selected reaction-monitoring assays for proteins and proteomes
-
Picotti, P.; Rinner, O.; Stallmach, R.; Dautel, F.; Farrah, T.; Domon, B.; Wenschuh, H.; Aebersold, R. High-throughput generation of selected reaction-monitoring assays for proteins and proteomes Nat. Methods 2010, 7 (1) 43-6
-
(2010)
Nat. Methods
, vol.7
, Issue.1
, pp. 43-46
-
-
Picotti, P.1
Rinner, O.2
Stallmach, R.3
Dautel, F.4
Farrah, T.5
Domon, B.6
Wenschuh, H.7
Aebersold, R.8
-
15
-
-
79960214321
-
A targeted proteomics-based pipeline for verification of biomarkers in plasma
-
Whiteaker, J. R.; Lin, C.; Kennedy, J.; Hou, L.; Trute, M.; Sokal, I.; Yan, P.; Schoenherr, R. M.; Zhao, L.; Voytovich, U. J.; Kelly-Spratt, K. S.; Krasnoselsky, A.; Gafken, P. R.; Hogan, J. M.; Jones, L. A.; Wang, P.; Amon, L.; Chodosh, L. A.; Nelson, P. S.; McIntosh, M. W.; Kemp, C. J.; Paulovich, A. G. A targeted proteomics-based pipeline for verification of biomarkers in plasma Nat. Biotechnol. 2011, 29 (7) 625-34
-
(2011)
Nat. Biotechnol.
, vol.29
, Issue.7
, pp. 625-634
-
-
Whiteaker, J.R.1
Lin, C.2
Kennedy, J.3
Hou, L.4
Trute, M.5
Sokal, I.6
Yan, P.7
Schoenherr, R.M.8
Zhao, L.9
Voytovich, U.J.10
Kelly-Spratt, K.S.11
Krasnoselsky, A.12
Gafken, P.R.13
Hogan, J.M.14
Jones, L.A.15
Wang, P.16
Amon, L.17
Chodosh, L.A.18
Nelson, P.S.19
McIntosh, M.W.20
Kemp, C.J.21
Paulovich, A.G.22
more..
-
16
-
-
79952284442
-
Mutant proteins as cancer-specific biomarkers
-
Wang, Q.; Chaerkady, R.; Wu, J.; Hwang, H. J.; Papadopoulos, N.; Kopelovich, L.; Maitra, A.; Matthaei, H.; Eshleman, J. R.; Hruban, R. H.; Kinzler, K. W.; Pandey, A.; Vogelstein, B. Mutant proteins as cancer-specific biomarkers Proc. Natl. Acad. Sci. U. S. A. 2011, 108 (6) 2444-9
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, Issue.6
, pp. 2444-2449
-
-
Wang, Q.1
Chaerkady, R.2
Wu, J.3
Hwang, H.J.4
Papadopoulos, N.5
Kopelovich, L.6
Maitra, A.7
Matthaei, H.8
Eshleman, J.R.9
Hruban, R.H.10
Kinzler, K.W.11
Pandey, A.12
Vogelstein, B.13
-
17
-
-
75749115605
-
Selected reaction monitoring-mass spectrometric immunoassay responsive to parathyroid hormone and related variants
-
Lopez, M. F.; Rezai, T.; Sarracino, D. A.; Prakash, A.; Krastins, B.; Athanas, M.; Singh, R. J.; Barnidge, D. R.; Oran, P.; Borges, C.; Nelson, R. W. Selected reaction monitoring-mass spectrometric immunoassay responsive to parathyroid hormone and related variants Clin. Chem. 2010, 56 (2) 281-90
-
(2010)
Clin. Chem.
, vol.56
, Issue.2
, pp. 281-290
-
-
Lopez, M.F.1
Rezai, T.2
Sarracino, D.A.3
Prakash, A.4
Krastins, B.5
Athanas, M.6
Singh, R.J.7
Barnidge, D.R.8
Oran, P.9
Borges, C.10
Nelson, R.W.11
-
18
-
-
71049137289
-
Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma
-
Kuzyk, M. A.; Smith, D.; Yang, J. C.; Cross, T. J.; Jackson, A. M.; Hardie, D. B.; Anderson, N. L.; Borchers, C. H. Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma Mol. Cell. Proteomics 2009, 8 (8) 1860-77
-
(2009)
Mol. Cell. Proteomics
, vol.8
, Issue.8
, pp. 1860-1877
-
-
Kuzyk, M.A.1
Smith, D.2
Yang, J.C.3
Cross, T.J.4
Jackson, A.M.5
Hardie, D.B.6
Anderson, N.L.7
Borchers, C.H.8
-
19
-
-
79953227740
-
Increased selectivity, analytical precision, and throughput in targeted proteomics
-
002931
-
Kiyonami, R.; Schoen, A.; Prakash, A.; Peterman, S.; Zabrouskov, V.; Picotti, P.; Aebersold, R.; Huhmer, A.; Domon, B. Increased selectivity, analytical precision, and throughput in targeted proteomics Mol. Cell. Proteomics 2011, 10 (2) M110 002931
-
(2011)
Mol. Cell. Proteomics
, vol.10
, Issue.2
, pp. 110
-
-
Kiyonami, R.1
Schoen, A.2
Prakash, A.3
Peterman, S.4
Zabrouskov, V.5
Picotti, P.6
Aebersold, R.7
Huhmer, A.8
Domon, B.9
-
20
-
-
78650355102
-
Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry
-
Maclean, B.; Tomazela, D. M.; Abbatiello, S. E.; Zhang, S.; Whiteaker, J. R.; Paulovich, A. G.; Carr, S. A.; Maccoss, M. J. Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry Anal. Chem. 2010, 82 (24) 10116-24
-
(2010)
Anal. Chem.
, vol.82
, Issue.24
, pp. 10116-10124
-
-
MacLean, B.1
Tomazela, D.M.2
Abbatiello, S.E.3
Zhang, S.4
Whiteaker, J.R.5
Paulovich, A.G.6
Carr, S.A.7
MacCoss, M.J.8
-
21
-
-
84879394723
-
-
American Cancer Society, Cancer Facts & Figures 2011. (accessed April 5, 2012)
-
American Cancer Society, Cancer Facts & Figures 2011. http://www.cancer.org/Research/CancerFactsFigures/CancerFactsFigures/ cancer-facts-figures-2011 (accessed April 5, 2012).
-
-
-
-
22
-
-
81755161170
-
Phase II trial of NGR-hTNF and doxorubicin in relapsed small cell lung cancer (SCLC)
-
Suppl; Abstr 7077
-
Vigano, M. G.; Cavina, R.; Novello, S.; Grossi, F.; Santoro, A.; Gregorc, V.; Scagliotti, G.; Garassino, I. M.; Rossoni, G.; Levra, M. G.; Genova, C.; Caligaris-Cappio, F.; Lambiase, A.; Bordignon, C. Phase II trial of NGR-hTNF and doxorubicin in relapsed small cell lung cancer (SCLC). J. Clin. Oncol. 2011, 29, Suppl; Abstr 7077.
-
(2011)
J. Clin. Oncol
, vol.29
-
-
Vigano, M.G.1
Cavina, R.2
Novello, S.3
Grossi, F.4
Santoro, A.5
Gregorc, V.6
Scagliotti, G.7
Garassino, I.M.8
Rossoni, G.9
Levra, M.G.10
Genova, C.11
Caligaris-Cappio, F.12
Lambiase, A.13
Bordignon, C.14
-
23
-
-
84879408689
-
-
University of Nebraska, N. C. I. N. A Phase I Study ofWeekly Doxorubicin and Oral Topotecan for Patients With Relapsed orRefractory Small Cell Lung Cancer (SCLC). (accessed April 5, 2012)
-
University of Nebraska, N. C. I. N., A Phase I Study ofWeekly Doxorubicin and Oral Topotecan for Patients With Relapsed orRefractory Small Cell Lung Cancer (SCLC). http://clinicaltrials.gov/ct2/show/NCT00856037 (accessed April 5, 2012).
-
-
-
-
24
-
-
15144354767
-
Co-transfection of MDR1 and MRP antisense RNAs abolishes the drug resistance in multidrug-resistant human lung cancer cells
-
Gao, Z.; Fields, J. Z.; Boman, B. M. Co-transfection of MDR1 and MRP antisense RNAs abolishes the drug resistance in multidrug-resistant human lung cancer cells Anticancer Res. 1998, 18 (4C) 3073-6
-
(1998)
Anticancer Res.
, vol.18
, Issue.4
, pp. 3073-3076
-
-
Gao, Z.1
Fields, J.Z.2
Boman, B.M.3
-
25
-
-
33746822732
-
Glutathione S-transferases as antioxidant enzymes: Small cell lung cancer (H69) cells transfected with hGSTA1 resist doxorubicin-induced apoptosis
-
Sharma, A.; Patrick, B.; Li, J.; Sharma, R.; Jeyabal, P. V. S.; Reddy, P. M. R. V.; Awasthi, S.; Awasthi, Y. C. Glutathione S-transferases as antioxidant enzymes: Small cell lung cancer (H69) cells transfected with hGSTA1 resist doxorubicin-induced apoptosis Arch. Biochem. Biophys. 2006, 452 (2) 165-73
-
(2006)
Arch. Biochem. Biophys.
, vol.452
, Issue.2
, pp. 165-173
-
-
Sharma, A.1
Patrick, B.2
Li, J.3
Sharma, R.4
Jeyabal, P.V.S.5
Reddy, P.M.R.V.6
Awasthi, S.7
Awasthi, Y.C.8
-
26
-
-
0028283890
-
Acquired resistance to cisplatin and doxorubicin in a small cell lung cancer cell line is correlated to elevated expression of glutathione-linked detoxification enzymes
-
Hao, X. Y.; Bergh, J.; Brodin, O.; Hellman, U.; Mannervik, B. Acquired resistance to cisplatin and doxorubicin in a small cell lung cancer cell line is correlated to elevated expression of glutathione-linked detoxification enzymes Carcinogenesis 1994, 15 (6) 1167-73
-
(1994)
Carcinogenesis
, vol.15
, Issue.6
, pp. 1167-1173
-
-
Hao, X.Y.1
Bergh, J.2
Brodin, O.3
Hellman, U.4
Mannervik, B.5
-
27
-
-
0011331810
-
Increased resistance to doxorubicin in human non-small-cell lung carcinomas with metallothionein expression
-
Mattern, J.; Volm, M. Increased resistance to doxorubicin in human non-small-cell lung carcinomas with metallothionein expression Int. J. Oncol. 1992, 1 (6) 687-9
-
(1992)
Int. J. Oncol.
, vol.1
, Issue.6
, pp. 687-689
-
-
Mattern, J.1
Volm, M.2
-
28
-
-
80855128111
-
The quantitative proteome of a human cell line
-
Beck, M.; Schmidt, A.; Malmstroem, J.; Claassen, M.; Ori, A.; Szymborska, A.; Herzog, F.; Rinner, O.; Ellenberg, J.; Aebersold, R. The quantitative proteome of a human cell line Mol. Syst. Biol. 2011, 7, 549
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 549
-
-
Beck, M.1
Schmidt, A.2
Malmstroem, J.3
Claassen, M.4
Ori, A.5
Szymborska, A.6
Herzog, F.7
Rinner, O.8
Ellenberg, J.9
Aebersold, R.10
-
29
-
-
78649808574
-
Comparison of strong cation exchange and SDS-PAGE fractionation for analysis of multiprotein complexes
-
Das, S.; Bosley, A. D.; Ye, X.; Chan, K. C.; Chu, I.; Green, J. E.; Issaq, H. J.; Veenstra, T. D.; Andresson, T. Comparison of strong cation exchange and SDS-PAGE fractionation for analysis of multiprotein complexes J. Proteome Res. 2010, 9 (12) 6696-704
-
(2010)
J. Proteome Res.
, vol.9
, Issue.12
, pp. 6696-6704
-
-
Das, S.1
Bosley, A.D.2
Ye, X.3
Chan, K.C.4
Chu, I.5
Green, J.E.6
Issaq, H.J.7
Veenstra, T.D.8
Andresson, T.9
-
30
-
-
0023109951
-
Deamidation, isomerization, and racemization at asparaginyl and aspartyl residues in peptides. Succinimide-linked reactions that contribute to protein degradation
-
Geiger, T.; Clarke, S. Deamidation, isomerization, and racemization at asparaginyl and aspartyl residues in peptides. Succinimide-linked reactions that contribute to protein degradation J. Biol. Chem. 1987, 262 (2) 785-94
-
(1987)
J. Biol. Chem.
, vol.262
, Issue.2
, pp. 785-794
-
-
Geiger, T.1
Clarke, S.2
-
31
-
-
84863080780
-
Proteomic approach reveals FKBP4 and S100A9 as potential prediction markers of therapeutic response to neoadjuvant chemotherapy in patients with breast cancer
-
Yang, W. S.; Moon, H. G.; Kim, H. S.; Choi, E. J.; Yu, M. H.; Noh, D. Y.; Lee, C. Proteomic approach reveals FKBP4 and S100A9 as potential prediction markers of therapeutic response to neoadjuvant chemotherapy in patients with breast cancer J. Proteome Res. 2012, 11 (2) 1078-88
-
(2012)
J. Proteome Res.
, vol.11
, Issue.2
, pp. 1078-1088
-
-
Yang, W.S.1
Moon, H.G.2
Kim, H.S.3
Choi, E.J.4
Yu, M.H.5
Noh, D.Y.6
Lee, C.7
-
32
-
-
34948894931
-
Death-receptor O-glycosylation controls tumor-cell sensitivity to the proapoptotic ligand Apo2L/TRAIL
-
Wagner, K. W.; Punnoose, E. A.; Januario, T.; Lawrence, D. A.; Pitti, R. M.; Lancaster, K.; Lee, D.; von Goetz, M.; Yee, S. F.; Totpal, K.; Huw, L.; Katta, V.; Cavet, G.; Hymowitz, S. G.; Amler, L.; Ashkenazi, A. Death-receptor O-glycosylation controls tumor-cell sensitivity to the proapoptotic ligand Apo2L/TRAIL Nat. Med. 2007, 13 (9) 1070-7
-
(2007)
Nat. Med.
, vol.13
, Issue.9
, pp. 1070-1077
-
-
Wagner, K.W.1
Punnoose, E.A.2
Januario, T.3
Lawrence, D.A.4
Pitti, R.M.5
Lancaster, K.6
Lee, D.7
Von Goetz, M.8
Yee, S.F.9
Totpal, K.10
Huw, L.11
Katta, V.12
Cavet, G.13
Hymowitz, S.G.14
Amler, L.15
Ashkenazi, A.16
-
33
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar, R.; Domrachev, M.; Lash, A. E. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository Nucleic Acids Res. 2002, 30 (1) 207-10
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.1
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
35
-
-
44849112219
-
ABT-263: A potent and orally bioavailable Bcl-2 family inhibitor
-
Tse, C.; Shoemaker, A. R.; Adickes, J.; Anderson, M. G.; Chen, J.; Jin, S.; Johnson, E. F.; Marsh, K. C.; Mitten, M. J.; Nimmer, P.; Roberts, L.; Tahir, S. K.; Xiao, Y.; Yang, X.; Zhang, H.; Fesik, S.; Rosenberg, S. H.; Elmore, S. W. ABT-263: a potent and orally bioavailable Bcl-2 family inhibitor Cancer Res. 2008, 68 (9) 3421-8
-
(2008)
Cancer Res.
, vol.68
, Issue.9
, pp. 3421-3428
-
-
Tse, C.1
Shoemaker, A.R.2
Adickes, J.3
Anderson, M.G.4
Chen, J.5
Jin, S.6
Johnson, E.F.7
Marsh, K.C.8
Mitten, M.J.9
Nimmer, P.10
Roberts, L.11
Tahir, S.K.12
Xiao, Y.13
Yang, X.14
Zhang, H.15
Fesik, S.16
Rosenberg, S.H.17
Elmore, S.W.18
-
36
-
-
10844290766
-
A model-based background adjustment for oligonucleotide expression arrays
-
Wu, Z. J.; Irizarry, R. A.; Gentleman, R.; Martinez-Murillo, F.; Spencer, F. A model-based background adjustment for oligonucleotide expression arrays J. Am. Stat. Assoc. 2004, 99 (468) 909-17
-
(2004)
J. Am. Stat. Assoc.
, vol.99
, Issue.468
, pp. 909-917
-
-
Wu, Z.J.1
Irizarry, R.A.2
Gentleman, R.3
Martinez-Murillo, F.4
Spencer, F.5
-
37
-
-
77950571596
-
Direct transfer of alpha-synuclein from neuron to astroglia causes inflammatory responses in synucleinopathies
-
Lee, H. J.; Suk, J. E.; Patrick, C.; Bae, E. J.; Cho, J. H.; Rho, S.; Hwang, D.; Masliah, E.; Lee, S. J. Direct transfer of alpha-synuclein from neuron to astroglia causes inflammatory responses in synucleinopathies J. Biol. Chem. 2010, 285 (12) 9262-72
-
(2010)
J. Biol. Chem.
, vol.285
, Issue.12
, pp. 9262-9272
-
-
Lee, H.J.1
Suk, J.E.2
Patrick, C.3
Bae, E.J.4
Cho, J.H.5
Rho, S.6
Hwang, D.7
Masliah, E.8
Lee, S.J.9
-
38
-
-
34447628843
-
Pathway mapping tools for analysis of high content data
-
Ekins, S.; Nikolsky, Y.; Bugrim, A.; Kirillov, E.; Nikolskaya, T. Pathway mapping tools for analysis of high content data Methods Mol. Biol. 2007, 356, 319-50
-
(2007)
Methods Mol. Biol.
, vol.356
, pp. 319-350
-
-
Ekins, S.1
Nikolsky, Y.2
Bugrim, A.3
Kirillov, E.4
Nikolskaya, T.5
-
39
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang da, W.; Sherman, B. T.; Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nat. Protoc. 2009, 4 (1) 44-57
-
(2009)
Nat. Protoc.
, vol.4
, Issue.1
, pp. 44-57
-
-
Huang Da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
40
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. the Gene Ontology Consortium
-
Ashburner, M.; Ball, C. A.; Blake, J. A.; Botstein, D.; Butler, H.; Cherry, J. M.; Davis, A. P.; Dolinski, K.; Dwight, S. S.; Eppig, J. T.; Harris, M. A.; Hill, D. P.; Issel-Tarver, L.; Kasarskis, A.; Lewis, S.; Matese, J. C.; Richardson, J. E.; Ringwald, M.; Rubin, G. M.; Sherlock, G. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium Nat. Genet. 2000, 25 (1) 25-9
-
(2000)
Nat. Genet.
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
41
-
-
38449101120
-
Integration of biological networks and gene expression data using Cytoscape
-
Cline, M. S.; Smoot, M.; Cerami, E.; Kuchinsky, A.; Landys, N.; Workman, C.; Christmas, R.; Avila-Campilo, I.; Creech, M.; Gross, B.; Hanspers, K.; Isserlin, R.; Kelley, R.; Killcoyne, S.; Lotia, S.; Maere, S.; Morris, J.; Ono, K.; Pavlovic, V.; Pico, A. R.; Vailaya, A.; Wang, P. L.; Adler, A.; Conklin, B. R.; Hood, L.; Kuiper, M.; Sander, C.; Schmulevich, I.; Schwikowski, B.; Warner, G. J.; Ideker, T.; Bader, G. D. Integration of biological networks and gene expression data using Cytoscape Nat. Protoc. 2007, 2 (10) 2366-82
-
(2007)
Nat. Protoc.
, vol.2
, Issue.10
, pp. 2366-2382
-
-
Cline, M.S.1
Smoot, M.2
Cerami, E.3
Kuchinsky, A.4
Landys, N.5
Workman, C.6
Christmas, R.7
Avila-Campilo, I.8
Creech, M.9
Gross, B.10
Hanspers, K.11
Isserlin, R.12
Kelley, R.13
Killcoyne, S.14
Lotia, S.15
Maere, S.16
Morris, J.17
Ono, K.18
Pavlovic, V.19
Pico, A.R.20
Vailaya, A.21
Wang, P.L.22
Adler, A.23
Conklin, B.R.24
Hood, L.25
Kuiper, M.26
Sander, C.27
Schmulevich, I.28
Schwikowski, B.29
Warner, G.J.30
Ideker, T.31
Bader, G.D.32
more..
-
42
-
-
54549094903
-
Somatic mutations affect key pathways in lung adenocarcinoma
-
Ding, L.; Getz, G.; Wheeler, D. A.; Mardis, E. R.; McLellan, M. D.; Cibulskis, K.; Sougnez, C.; Greulich, H.; Muzny, D. M.; Morgan, M. B.; Fulton, L.; Fulton, R. S.; Zhang, Q.; Wendl, M. C.; Lawrence, M. S.; Larson, D. E.; Chen, K.; Dooling, D. J.; Sabo, A.; Hawes, A. C.; Shen, H.; Jhangiani, S. N.; Lewis, L. R.; Hall, O.; Zhu, Y.; Mathew, T.; Ren, Y.; Yao, J.; Scherer, S. E.; Clerc, K.; Metcalf, G. A.; Ng, B.; Milosavljevic, A.; Gonzalez-Garay, M. L.; Osborne, J. R.; Meyer, R.; Shi, X.; Tang, Y.; Koboldt, D. C.; Lin, L.; Abbott, R.; Miner, T. L.; Pohl, C.; Fewell, G.; Haipek, C.; Schmidt, H.; Dunford-Shore, B. H.; Kraja, A.; Crosby, S. D.; Sawyer, C. S.; Vickery, T.; Sander, S.; Robinson, J.; Winckler, W.; Baldwin, J.; Chirieac, L. R.; Dutt, A.; Fennell, T.; Hanna, M.; Johnson, B. E.; Onofrio, R. C.; Thomas, R. K.; Tonon, G.; Weir, B. A.; Zhao, X.; Ziaugra, L.; Zody, M. C.; Giordano, T.; Orringer, M. B.; Roth, J. A.; Spitz, M. R.; Wistuba, I. I.; Ozenberger, B.; Good, P. J.; Chang, A. C.; Beer, D. G.; Watson, M. A.; Ladanyi, M.; Broderick, S.; Yoshizawa, A.; Travis, W. D.; Pao, W.; Province, M. A.; Weinstock, G. M.; Varmus, H. E.; Gabriel, S. B.; Lander, E. S.; Gibbs, R. A.; Meyerson, M.; Wilson, R. K. Somatic mutations affect key pathways in lung adenocarcinoma Nature 2008, 455 (7216) 1069-75
-
(2008)
Nature
, vol.455
, Issue.7216
, pp. 1069-1075
-
-
Ding, L.1
Getz, G.2
Wheeler, D.A.3
Mardis, E.R.4
McLellan, M.D.5
Cibulskis, K.6
Sougnez, C.7
Greulich, H.8
Muzny, D.M.9
Morgan, M.B.10
Fulton, L.11
Fulton, R.S.12
Zhang, Q.13
Wendl, M.C.14
Lawrence, M.S.15
Larson, D.E.16
Chen, K.17
Dooling, D.J.18
Sabo, A.19
Hawes, A.C.20
Shen, H.21
Jhangiani, S.N.22
Lewis, L.R.23
Hall, O.24
Zhu, Y.25
Mathew, T.26
Ren, Y.27
Yao, J.28
Scherer, S.E.29
Clerc, K.30
Metcalf, G.A.31
Ng, B.32
Milosavljevic, A.33
Gonzalez-Garay, M.L.34
Osborne, J.R.35
Meyer, R.36
Shi, X.37
Tang, Y.38
Koboldt, D.C.39
Lin, L.40
Abbott, R.41
Miner, T.L.42
Pohl, C.43
Fewell, G.44
Haipek, C.45
Schmidt, H.46
Dunford-Shore, B.H.47
Kraja, A.48
Crosby, S.D.49
Sawyer, C.S.50
Vickery, T.51
Sander, S.52
Robinson, J.53
Winckler, W.54
Baldwin, J.55
Chirieac, L.R.56
Dutt, A.57
Fennell, T.58
Hanna, M.59
Johnson, B.E.60
Onofrio, R.C.61
Thomas, R.K.62
Tonon, G.63
Weir, B.A.64
Zhao, X.65
Ziaugra, L.66
Zody, M.C.67
Giordano, T.68
Orringer, M.B.69
Roth, J.A.70
Spitz, M.R.71
Wistuba, I.I.72
Ozenberger, B.73
Good, P.J.74
Chang, A.C.75
Beer, D.G.76
Watson, M.A.77
Ladanyi, M.78
Broderick, S.79
Yoshizawa, A.80
Travis, W.D.81
Pao, W.82
Province, M.A.83
Weinstock, G.M.84
Varmus, H.E.85
Gabriel, S.B.86
Lander, E.S.87
Gibbs, R.A.88
Meyerson, M.89
Wilson, R.K.90
more..
-
43
-
-
47949114668
-
Detection of mutations in EGFR in circulating lung-cancer cells
-
Maheswaran, S.; Sequist, L. V.; Nagrath, S.; Ulkus, L.; Brannigan, B.; Collura, C. V.; Inserra, E.; Diederichs, S.; Iafrate, A. J.; Bell, D. W.; Digumarthy, S.; Muzikansky, A.; Irimia, D.; Settleman, J.; Tompkins, R. G.; Lynch, T. J.; Toner, M.; Haber, D. A. Detection of mutations in EGFR in circulating lung-cancer cells N. Engl. J. Med. 2008, 359 (4) 366-77
-
(2008)
N. Engl. J. Med.
, vol.359
, Issue.4
, pp. 366-377
-
-
Maheswaran, S.1
Sequist, L.V.2
Nagrath, S.3
Ulkus, L.4
Brannigan, B.5
Collura, C.V.6
Inserra, E.7
Diederichs, S.8
Iafrate, A.J.9
Bell, D.W.10
Digumarthy, S.11
Muzikansky, A.12
Irimia, D.13
Settleman, J.14
Tompkins, R.G.15
Lynch, T.J.16
Toner, M.17
Haber, D.A.18
-
44
-
-
48649107410
-
Novel MEK1 mutation identified by mutational analysis of epidermal growth factor receptor signaling pathway genes in lung adenocarcinoma
-
Marks, J. L.; Gong, Y.; Chitale, D.; Golas, B.; McLellan, M. D.; Kasai, Y.; Ding, L.; Mardis, E. R.; Wilson, R. K.; Solit, D.; Levine, R.; Michel, K.; Thomas, R. K.; Rusch, V. W.; Ladanyi, M.; Pao, W. Novel MEK1 mutation identified by mutational analysis of epidermal growth factor receptor signaling pathway genes in lung adenocarcinoma Cancer Res. 2008, 68 (14) 5524-8
-
(2008)
Cancer Res.
, vol.68
, Issue.14
, pp. 5524-5528
-
-
Marks, J.L.1
Gong, Y.2
Chitale, D.3
Golas, B.4
McLellan, M.D.5
Kasai, Y.6
Ding, L.7
Mardis, E.R.8
Wilson, R.K.9
Solit, D.10
Levine, R.11
Michel, K.12
Thomas, R.K.13
Rusch, V.W.14
Ladanyi, M.15
Pao, W.16
-
45
-
-
33847293670
-
High-throughput oncogene mutation profiling in human cancer
-
Thomas, R. K.; Baker, A. C.; Debiasi, R. M.; Winckler, W.; Laframboise, T.; Lin, W. M.; Wang, M.; Feng, W.; Zander, T.; MacConaill, L.; Lee, J. C.; Nicoletti, R.; Hatton, C.; Goyette, M.; Girard, L.; Majmudar, K.; Ziaugra, L.; Wong, K. K.; Gabriel, S.; Beroukhim, R.; Peyton, M.; Barretina, J.; Dutt, A.; Emery, C.; Greulich, H.; Shah, K.; Sasaki, H.; Gazdar, A.; Minna, J.; Armstrong, S. A.; Mellinghoff, I. K.; Hodi, F. S.; Dranoff, G.; Mischel, P. S.; Cloughesy, T. F.; Nelson, S. F.; Liau, L. M.; Mertz, K.; Rubin, M. A.; Moch, H.; Loda, M.; Catalona, W.; Fletcher, J.; Signoretti, S.; Kaye, F.; Anderson, K. C.; Demetri, G. D.; Dummer, R.; Wagner, S.; Herlyn, M.; Sellers, W. R.; Meyerson, M.; Garraway, L. A. High-throughput oncogene mutation profiling in human cancer Nat. Genet. 2007, 39 (3) 347-51
-
(2007)
Nat. Genet.
, vol.39
, Issue.3
, pp. 347-351
-
-
Thomas, R.K.1
Baker, A.C.2
Debiasi, R.M.3
Winckler, W.4
Laframboise, T.5
Lin, W.M.6
Wang, M.7
Feng, W.8
Zander, T.9
MacConaill, L.10
Lee, J.C.11
Nicoletti, R.12
Hatton, C.13
Goyette, M.14
Girard, L.15
Majmudar, K.16
Ziaugra, L.17
Wong, K.K.18
Gabriel, S.19
Beroukhim, R.20
Peyton, M.21
Barretina, J.22
Dutt, A.23
Emery, C.24
Greulich, H.25
Shah, K.26
Sasaki, H.27
Gazdar, A.28
Minna, J.29
Armstrong, S.A.30
Mellinghoff, I.K.31
Hodi, F.S.32
Dranoff, G.33
Mischel, P.S.34
Cloughesy, T.F.35
Nelson, S.F.36
Liau, L.M.37
Mertz, K.38
Rubin, M.A.39
Moch, H.40
Loda, M.41
Catalona, W.42
Fletcher, J.43
Signoretti, S.44
Kaye, F.45
Anderson, K.C.46
Demetri, G.D.47
Dummer, R.48
Wagner, S.49
Herlyn, M.50
Sellers, W.R.51
Meyerson, M.52
Garraway, L.A.53
more..
-
46
-
-
52049099853
-
PIK3CA mutations and copy number gains in human lung cancers
-
Yamamoto, H.; Shigematsu, H.; Nomura, M.; Lockwood, W. W.; Sato, M.; Okumura, N.; Soh, J.; Suzuki, M.; Wistuba, I. I.; Fong, K. M.; Lee, H.; Toyooka, S.; Date, H.; Lam, W. L.; Minna, J. D.; Gazdar, A. F. PIK3CA mutations and copy number gains in human lung cancers Cancer Res. 2008, 68 (17) 6913-21
-
(2008)
Cancer Res.
, vol.68
, Issue.17
, pp. 6913-6921
-
-
Yamamoto, H.1
Shigematsu, H.2
Nomura, M.3
Lockwood, W.W.4
Sato, M.5
Okumura, N.6
Soh, J.7
Suzuki, M.8
Wistuba, I.I.9
Fong, K.M.10
Lee, H.11
Toyooka, S.12
Date, H.13
Lam, W.L.14
Minna, J.D.15
Gazdar, A.F.16
-
47
-
-
70350641014
-
SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas
-
Bass, A. J.; Watanabe, H.; Mermel, C. H.; Yu, S.; Perner, S.; Verhaak, R. G.; Kim, S. Y.; Wardwell, L.; Tamayo, P.; Gat-Viks, I.; Ramos, A. H.; Woo, M. S.; Weir, B. A.; Getz, G.; Beroukhim, R.; O'Kelly, M.; Dutt, A.; Rozenblatt-Rosen, O.; Dziunycz, P.; Komisarof, J.; Chirieac, L. R.; Lafargue, C. J.; Scheble, V.; Wilbertz, T.; Ma, C.; Rao, S.; Nakagawa, H.; Stairs, D. B.; Lin, L.; Giordano, T. J.; Wagner, P.; Minna, J. D.; Gazdar, A. F.; Zhu, C. Q.; Brose, M. S.; Cecconello, I., Jr; U., R.; Marie, S. K.; Dahl, O.; Shivdasani, R. A.; Tsao, M. S.; Rubin, M. A.; Wong, K. K.; Regev, A.; Hahn, W. C.; Beer, D. G.; Rustgi, A. K.; Meyerson, M. SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas Nat. Genet. 2009, 41 (11) 1238-42
-
(2009)
Nat. Genet.
, vol.41
, Issue.11
, pp. 1238-1242
-
-
Bass, A.J.1
Watanabe, H.2
Mermel, C.H.3
Yu, S.4
Perner, S.5
Verhaak, R.G.6
Kim, S.Y.7
Wardwell, L.8
Tamayo, P.9
Gat-Viks, I.10
Ramos, A.H.11
Woo, M.S.12
Weir, B.A.13
Getz, G.14
Beroukhim, R.15
O'Kelly, M.16
Dutt, A.17
Rozenblatt-Rosen, O.18
Dziunycz, P.19
Komisarof, J.20
Chirieac, L.R.21
Lafargue, C.J.22
Scheble, V.23
Wilbertz, T.24
more..
-
48
-
-
36749068356
-
Oncogenic cooperation and coamplification of developmental transcription factor genes in lung cancer
-
Kendall, J.; Liu, Q.; Bakleh, A.; Krasnitz, A.; Nguyen, K. C.; Lakshmi, B.; Gerald, W. L.; Powers, S.; Mu, D. Oncogenic cooperation and coamplification of developmental transcription factor genes in lung cancer Proc. Natl. Acad. Sci. U. S. A. 2007, 104 (42) 16663-8
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, Issue.42
, pp. 16663-16668
-
-
Kendall, J.1
Liu, Q.2
Bakleh, A.3
Krasnitz, A.4
Nguyen, K.C.5
Lakshmi, B.6
Gerald, W.L.7
Powers, S.8
Mu, D.9
-
49
-
-
36248980204
-
Characterizing the cancer genome in lung adenocarcinoma
-
Weir, B. A.; Woo, M. S.; Getz, G.; Perner, S.; Ding, L.; Beroukhim, R.; Lin, W. M.; Province, M. A.; Kraja, A.; Johnson, L. A.; Shah, K.; Sato, M.; Thomas, R. K.; Barletta, J. A.; Borecki, I. B.; Broderick, S.; Chang, A. C.; Chiang, D. Y.; Chirieac, L. R.; Cho, J.; Fujii, Y.; Gazdar, A. F.; Giordano, T.; Greulich, H.; Hanna, M.; Johnson, B. E.; Kris, M. G.; Lash, A.; Lin, L.; Lindeman, N.; Mardis, E. R.; McPherson, J. D.; Minna, J. D.; Morgan, M. B.; Nadel, M.; Orringer, M. B.; Osborne, J. R.; Ozenberger, B.; Ramos, A. H.; Robinson, J.; Roth, J. A.; Rusch, V.; Sasaki, H.; Shepherd, F.; Sougnez, C.; Spitz, M. R.; Tsao, M. S.; Twomey, D.; Verhaak, R. G.; Weinstock, G. M.; Wheeler, D. A.; Winckler, W.; Yoshizawa, A.; Yu, S.; Zakowski, M. F.; Zhang, Q.; Beer, D. G.; Wistuba, I. I.; Watson, M. A.; Garraway, L. A.; Ladanyi, M.; Travis, W. D.; Pao, W.; Rubin, M. A.; Gabriel, S. B.; Gibbs, R. A.; Varmus, H. E.; Wilson, R. K.; Lander, E. S.; Meyerson, M. Characterizing the cancer genome in lung adenocarcinoma Nature 2007, 450 (7171) 893-8
-
(2007)
Nature
, vol.450
, Issue.7171
, pp. 893-898
-
-
Weir, B.A.1
Woo, M.S.2
Getz, G.3
Perner, S.4
Ding, L.5
Beroukhim, R.6
Lin, W.M.7
Province, M.A.8
Kraja, A.9
Johnson, L.A.10
Shah, K.11
Sato, M.12
Thomas, R.K.13
Barletta, J.A.14
Borecki, I.B.15
Broderick, S.16
Chang, A.C.17
Chiang, D.Y.18
Chirieac, L.R.19
Cho, J.20
Fujii, Y.21
Gazdar, A.F.22
Giordano, T.23
Greulich, H.24
Hanna, M.25
Johnson, B.E.26
Kris, M.G.27
Lash, A.28
Lin, L.29
Lindeman, N.30
Mardis, E.R.31
McPherson, J.D.32
Minna, J.D.33
Morgan, M.B.34
Nadel, M.35
Orringer, M.B.36
Osborne, J.R.37
Ozenberger, B.38
Ramos, A.H.39
Robinson, J.40
Roth, J.A.41
Rusch, V.42
Sasaki, H.43
Shepherd, F.44
Sougnez, C.45
Spitz, M.R.46
Tsao, M.S.47
Twomey, D.48
Verhaak, R.G.49
Weinstock, G.M.50
Wheeler, D.A.51
Winckler, W.52
Yoshizawa, A.53
Yu, S.54
Zakowski, M.F.55
Zhang, Q.56
Beer, D.G.57
Wistuba, I.I.58
Watson, M.A.59
Garraway, L.A.60
Ladanyi, M.61
Travis, W.D.62
Pao, W.63
Rubin, M.A.64
Gabriel, S.B.65
Gibbs, R.A.66
Varmus, H.E.67
Wilson, R.K.68
Lander, E.S.69
Meyerson, M.70
more..
-
50
-
-
38349135680
-
High-resolution mapping of DNA hypermethylation and hypomethylation in lung cancer
-
Rauch, T. A.; Zhong, X.; Wu, X.; Wang, M.; Kernstine, K. H.; Wang, Z.; Riggs, A. D.; Pfeifer, G. P. High-resolution mapping of DNA hypermethylation and hypomethylation in lung cancer Proc. Natl. Acad. Sci. U. S. A. 2008, 105 (1) 252-7
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, Issue.1
, pp. 252-257
-
-
Rauch, T.A.1
Zhong, X.2
Wu, X.3
Wang, M.4
Kernstine, K.H.5
Wang, Z.6
Riggs, A.D.7
Pfeifer, G.P.8
-
51
-
-
33845926895
-
A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies
-
Shames, D. S.; Girard, L.; Gao, B.; Sato, M.; Lewis, C. M.; Shivapurkar, N.; Jiang, A.; Perou, C. M.; Kim, Y. H.; Pollack, J. R.; Fong, K. M.; Lam, C. L.; Wong, M.; Shyr, Y.; Nanda, R.; Olopade, O. I.; Gerald, W.; Euhus, D. M.; Shay, J. W.; Gazdar, A. F.; Minna, J. D. A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies PLoS Med. 2006, 3 (12) e486
-
(2006)
PLoS Med.
, vol.3
, Issue.12
, pp. 486
-
-
Shames, D.S.1
Girard, L.2
Gao, B.3
Sato, M.4
Lewis, C.M.5
Shivapurkar, N.6
Jiang, A.7
Perou, C.M.8
Kim, Y.H.9
Pollack, J.R.10
Fong, K.M.11
Lam, C.L.12
Wong, M.13
Shyr, Y.14
Nanda, R.15
Olopade, O.I.16
Gerald, W.17
Euhus, D.M.18
Shay, J.W.19
Gazdar, A.F.20
Minna, J.D.21
more..
-
52
-
-
0037068329
-
DNA methylation analysis: A powerful new tool for lung cancer diagnosis
-
Tsou, J. A.; Hagen, J. A.; Carpenter, C. L.; Laird-Offringa, I. A. DNA methylation analysis: a powerful new tool for lung cancer diagnosis Oncogene 2002, 21 (35) 5450-61
-
(2002)
Oncogene
, vol.21
, Issue.35
, pp. 5450-5461
-
-
Tsou, J.A.1
Hagen, J.A.2
Carpenter, C.L.3
Laird-Offringa, I.A.4
-
53
-
-
84879345507
-
-
SABiosciences, a. Q. c. Functional Gene Grouping, Human Lung Cancer DNA Methylation PCR Array. (accessed April 5, 2012)
-
SABiosciences, a. Q. c., Functional Gene Grouping, Human Lung Cancer DNA Methylation PCR Array. http://www.sabiosciences.com/dna-methylation-product/ HTML/MEAH-3040A.html#function (accessed April 5, 2012).
-
-
-
-
54
-
-
18544365698
-
Gene-expression profiles predict survival of patients with lung adenocarcinoma
-
Beer, D. G.; Kardia, S. L.; Huang, C. C.; Giordano, T. J.; Levin, A. M.; Misek, D. E.; Lin, L.; Chen, G.; Gharib, T. G.; Thomas, D. G.; Lizyness, M. L.; Kuick, R.; Hayasaka, S.; Taylor, J. M.; Iannettoni, M. D.; Orringer, M. B.; Hanash, S. Gene-expression profiles predict survival of patients with lung adenocarcinoma Nat. Med. 2002, 8 (8) 816-24
-
(2002)
Nat. Med.
, vol.8
, Issue.8
, pp. 816-824
-
-
Beer, D.G.1
Kardia, S.L.2
Huang, C.C.3
Giordano, T.J.4
Levin, A.M.5
Misek, D.E.6
Lin, L.7
Chen, G.8
Gharib, T.G.9
Thomas, D.G.10
Lizyness, M.L.11
Kuick, R.12
Hayasaka, S.13
Taylor, J.M.14
Iannettoni, M.D.15
Orringer, M.B.16
Hanash, S.17
-
55
-
-
0035923521
-
Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses
-
Bhattacharjee, A.; Richards, W. G.; Staunton, J.; Li, C.; Monti, S.; Vasa, P.; Ladd, C.; Beheshti, J.; Bueno, R.; Gillette, M.; Loda, M.; Weber, G.; Mark, E. J.; Lander, E. S.; Wong, W.; Johnson, B. E.; Golub, T. R.; Sugarbaker, D. J.; Meyerson, M. Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses Proc. Natl. Acad. Sci. U. S. A. 2001, 98 (24) 13790-5
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, Issue.24
, pp. 13790-13795
-
-
Bhattacharjee, A.1
Richards, W.G.2
Staunton, J.3
Li, C.4
Monti, S.5
Vasa, P.6
Ladd, C.7
Beheshti, J.8
Bueno, R.9
Gillette, M.10
Loda, M.11
Weber, G.12
Mark, E.J.13
Lander, E.S.14
Wong, W.15
Johnson, B.E.16
Golub, T.R.17
Sugarbaker, D.J.18
Meyerson, M.19
-
56
-
-
0035923583
-
Diversity of gene expression in adenocarcinoma of the lung
-
Garber, M. E.; Troyanskaya, O. G.; Schluens, K.; Petersen, S.; Thaesler, Z.; Pacyna-Gengelbach, M.; van de Rijn, M.; Rosen, G. D.; Perou, C. M.; Whyte, R. I.; Altman, R. B.; Brown, P. O.; Botstein, D.; Petersen, I. Diversity of gene expression in adenocarcinoma of the lung Proc. Natl. Acad. Sci. U. S. A. 2001, 98 (24) 13784-9
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, Issue.24
, pp. 13784-13789
-
-
Garber, M.E.1
Troyanskaya, O.G.2
Schluens, K.3
Petersen, S.4
Thaesler, Z.5
Pacyna-Gengelbach, M.6
Van De Rijn, M.7
Rosen, G.D.8
Perou, C.M.9
Whyte, R.I.10
Altman, R.B.11
Brown, P.O.12
Botstein, D.13
Petersen, I.14
-
57
-
-
1542375346
-
Two prognostically significant subtypes of high-grade lung neuroendocrine tumours independent of small-cell and large-cell neuroendocrine carcinomas identified by gene expression profiles
-
Jones, M. H.; Virtanen, C.; Honjoh, D.; Miyoshi, T.; Satoh, Y.; Okumura, S.; Nakagawa, K.; Nomura, H.; Ishikawa, Y. Two prognostically significant subtypes of high-grade lung neuroendocrine tumours independent of small-cell and large-cell neuroendocrine carcinomas identified by gene expression profiles Lancet 2004, 363 (9411) 775-81
-
(2004)
Lancet
, vol.363
, Issue.9411
, pp. 775-781
-
-
Jones, M.H.1
Virtanen, C.2
Honjoh, D.3
Miyoshi, T.4
Satoh, Y.5
Okumura, S.6
Nakagawa, K.7
Nomura, H.8
Ishikawa, Y.9
-
58
-
-
45749140422
-
Gene expression signature of cigarette smoking and its role in lung adenocarcinoma development and survival
-
Landi, M. T.; Dracheva, T.; Rotunno, M.; Figueroa, J. D.; Liu, H.; Dasgupta, A.; Mann, F. E.; Fukuoka, J.; Hames, M.; Bergen, A. W.; Murphy, S. E.; Yang, P.; Pesatori, A. C.; Consonni, D.; Bertazzi, P. A.; Wacholder, S.; Shih, J. H.; Caporaso, N. E.; Jen, J. Gene expression signature of cigarette smoking and its role in lung adenocarcinoma development and survival PLoS One 2008, 3 (2) e1651
-
(2008)
PLoS One
, vol.3
, Issue.2
, pp. 1651
-
-
Landi, M.T.1
Dracheva, T.2
Rotunno, M.3
Figueroa, J.D.4
Liu, H.5
Dasgupta, A.6
Mann, F.E.7
Fukuoka, J.8
Hames, M.9
Bergen, A.W.10
Murphy, S.E.11
Yang, P.12
Pesatori, A.C.13
Consonni, D.14
Bertazzi, P.A.15
Wacholder, S.16
Shih, J.H.17
Caporaso, N.E.18
Jen, J.19
-
59
-
-
33745791118
-
Targeting ADAM-mediated ligand cleavage to inhibit HER3 and EGFR pathways in non-small cell lung cancer
-
Zhou, B. B.; Peyton, M.; He, B.; Liu, C.; Girard, L.; Caudler, E.; Lo, Y.; Baribaud, F.; Mikami, I.; Reguart, N.; Yang, G.; Li, Y.; Yao, W.; Vaddi, K.; Gazdar, A. F.; Friedman, S. M.; Jablons, D. M.; Newton, R. C.; Fridman, J. S.; Minna, J. D.; Scherle, P. A. Targeting ADAM-mediated ligand cleavage to inhibit HER3 and EGFR pathways in non-small cell lung cancer Cancer Cell 2006, 10 (1) 39-50
-
(2006)
Cancer Cell
, vol.10
, Issue.1
, pp. 39-50
-
-
Zhou, B.B.1
Peyton, M.2
He, B.3
Liu, C.4
Girard, L.5
Caudler, E.6
Lo, Y.7
Baribaud, F.8
Mikami, I.9
Reguart, N.10
Yang, G.11
Li, Y.12
Yao, W.13
Vaddi, K.14
Gazdar, A.F.15
Friedman, S.M.16
Jablons, D.M.17
Newton, R.C.18
Fridman, J.S.19
Minna, J.D.20
Scherle, P.A.21
more..
-
60
-
-
34247170626
-
Proteomics-based identification of secreted protein dihydrodiol dehydrogenase as a novel serum markers of non-small cell lung cancer
-
Huang, L. J.; Chen, S. X.; Huang, Y.; Luo, W. J.; Jiang, H. H.; Hu, Q. H.; Zhang, P. F.; Yi, H. Proteomics-based identification of secreted protein dihydrodiol dehydrogenase as a novel serum markers of non-small cell lung cancer Lung Cancer 2006, 54 (1) 87-94
-
(2006)
Lung Cancer
, vol.54
, Issue.1
, pp. 87-94
-
-
Huang, L.J.1
Chen, S.X.2
Huang, Y.3
Luo, W.J.4
Jiang, H.H.5
Hu, Q.H.6
Zhang, P.F.7
Yi, H.8
-
61
-
-
75149133225
-
Identification of five candidate lung cancer biomarkers by proteomics analysis of conditioned media of four lung cancer cell lines
-
Planque, C.; Kulasingam, V.; Smith, C. R.; Reckamp, K.; Goodglick, L.; Diamandis, E. P. Identification of five candidate lung cancer biomarkers by proteomics analysis of conditioned media of four lung cancer cell lines Mol. Cell. Proteomics 2009, 8 (12) 2746-58
-
(2009)
Mol. Cell. Proteomics
, vol.8
, Issue.12
, pp. 2746-2758
-
-
Planque, C.1
Kulasingam, V.2
Smith, C.R.3
Reckamp, K.4
Goodglick, L.5
Diamandis, E.P.6
-
62
-
-
36849065315
-
Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer
-
Rikova, K.; Guo, A.; Zeng, Q.; Possemato, A.; Yu, J.; Haack, H.; Nardone, J.; Lee, K.; Reeves, C.; Li, Y.; Hu, Y.; Tan, Z.; Stokes, M.; Sullivan, L.; Mitchell, J.; Wetzel, R.; Macneill, J.; Ren, J. M.; Yuan, J.; Bakalarski, C. E.; Villen, J.; Kornhauser, J. M.; Smith, B.; Li, D.; Zhou, X.; Gygi, S. P.; Gu, T. L.; Polakiewicz, R. D.; Rush, J.; Comb, M. J. Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer Cell 2007, 131 (6) 1190-203
-
(2007)
Cell
, vol.131
, Issue.6
, pp. 1190-1203
-
-
Rikova, K.1
Guo, A.2
Zeng, Q.3
Possemato, A.4
Yu, J.5
Haack, H.6
Nardone, J.7
Lee, K.8
Reeves, C.9
Li, Y.10
Hu, Y.11
Tan, Z.12
Stokes, M.13
Sullivan, L.14
Mitchell, J.15
Wetzel, R.16
MacNeill, J.17
Ren, J.M.18
Yuan, J.19
Bakalarski, C.E.20
Villen, J.21
Kornhauser, J.M.22
Smith, B.23
Li, D.24
Zhou, X.25
Gygi, S.P.26
Gu, T.L.27
Polakiewicz, R.D.28
Rush, J.29
Comb, M.J.30
more..
-
63
-
-
34347209975
-
Determination of metastasis-associated proteins in non-small cell lung cancer by comparative proteomic analysis
-
Tian, T.; Hao, J.; Xu, A.; Luo, C.; Liu, C.; Huang, L.; Xiao, X.; He, D. Determination of metastasis-associated proteins in non-small cell lung cancer by comparative proteomic analysis Cancer Sci. 2007, 98 (8) 1265-74
-
(2007)
Cancer Sci.
, vol.98
, Issue.8
, pp. 1265-1274
-
-
Tian, T.1
Hao, J.2
Xu, A.3
Luo, C.4
Liu, C.5
Huang, L.6
Xiao, X.7
He, D.8
-
64
-
-
23944498611
-
Proteomic profiling of human pleural effusion using two-dimensional nano liquid chromatography tandem mass spectrometry
-
Tyan, Y. C.; Wu, H. Y.; Lai, W. W.; Su, W. C.; Liao, P. C. Proteomic profiling of human pleural effusion using two-dimensional nano liquid chromatography tandem mass spectrometry J. Proteome Res. 2005, 4 (4) 1274-86
-
(2005)
J. Proteome Res.
, vol.4
, Issue.4
, pp. 1274-1286
-
-
Tyan, Y.C.1
Wu, H.Y.2
Lai, W.W.3
Su, W.C.4
Liao, P.C.5
-
65
-
-
27644516753
-
An approach to studying lung cancer-related proteins in human blood
-
Xiao, T.; Ying, W.; Li, L.; Hu, Z.; Ma, Y.; Jiao, L.; Ma, J.; Cai, Y.; Lin, D.; Guo, S.; Han, N.; Di, X.; Li, M.; Zhang, D.; Su, K.; Yuan, J.; Zheng, H.; Gao, M.; He, J.; Shi, S.; Li, W.; Xu, N.; Zhang, H.; Liu, Y.; Zhang, K.; Gao, Y.; Qian, X.; Cheng, S. An approach to studying lung cancer-related proteins in human blood Mol. Cell. Proteomics 2005, 4 (10) 1480-6
-
(2005)
Mol. Cell. Proteomics
, vol.4
, Issue.10
, pp. 1480-1486
-
-
Xiao, T.1
Ying, W.2
Li, L.3
Hu, Z.4
Ma, Y.5
Jiao, L.6
Ma, J.7
Cai, Y.8
Lin, D.9
Guo, S.10
Han, N.11
Di, X.12
Li, M.13
Zhang, D.14
Su, K.15
Yuan, J.16
Zheng, H.17
Gao, M.18
He, J.19
Shi, S.20
Li, W.21
Xu, N.22
Zhang, H.23
Liu, Y.24
Zhang, K.25
Gao, Y.26
Qian, X.27
Cheng, S.28
more..
-
66
-
-
84856707623
-
Accurate quantification of cardiovascular biomarkers in serum using Protein Standard Absolute Quantification (PSAQ) and selected reaction monitoring
-
008235
-
Huillet, C.; Adrait, A.; Lebert, D.; Picard, G.; Trauchessec, M.; Louwagie, M.; Dupuis, A.; Hittinger, L.; Ghaleh, B.; Le Corvoisier, P.; Jaquinod, M.; Garin, J.; Bruley, C.; Brun, V. Accurate quantification of cardiovascular biomarkers in serum using Protein Standard Absolute Quantification (PSAQ) and selected reaction monitoring Mol. Cell. Proteomics 2012, 11 (2) M111 008235
-
(2012)
Mol. Cell. Proteomics
, vol.11
, Issue.2
, pp. 111
-
-
Huillet, C.1
Adrait, A.2
Lebert, D.3
Picard, G.4
Trauchessec, M.5
Louwagie, M.6
Dupuis, A.7
Hittinger, L.8
Ghaleh, B.9
Le Corvoisier, P.10
Jaquinod, M.11
Garin, J.12
Bruley, C.13
Brun, V.14
-
67
-
-
72949089708
-
Global signatures of protein and mRNA expression levels
-
de Sousa Abreu, R.; Penalva, L. O.; Marcotte, E. M.; Vogel, C. Global signatures of protein and mRNA expression levels Mol. Biosyst. 2009, 5 (12) 1512-26
-
(2009)
Mol. Biosyst.
, vol.5
, Issue.12
, pp. 1512-1526
-
-
De Sousa Abreu, R.1
Penalva, L.O.2
Marcotte, E.M.3
Vogel, C.4
-
68
-
-
67149111590
-
STAT1 pathway mediates amplification of metastatic potential and resistance to therapy
-
Khodarev, N. N.; Roach, P.; Pitroda, S. P.; Golden, D. W.; Bhayani, M.; Shao, M. Y.; Darga, T. E.; Beveridge, M. G.; Sood, R. F.; Sutton, H. G.; Beckett, M. A.; Mauceri, H. J.; Posner, M. C.; Weichselbaum, R. R. STAT1 pathway mediates amplification of metastatic potential and resistance to therapy PLoS One 2009, 4 (6) e5821
-
(2009)
PLoS One
, vol.4
, Issue.6
, pp. 5821
-
-
Khodarev, N.N.1
Roach, P.2
Pitroda, S.P.3
Golden, D.W.4
Bhayani, M.5
Shao, M.Y.6
Darga, T.E.7
Beveridge, M.G.8
Sood, R.F.9
Sutton, H.G.10
Beckett, M.A.11
Mauceri, H.J.12
Posner, M.C.13
Weichselbaum, R.R.14
-
69
-
-
24944521677
-
Identification of molecular mechanisms for cellular drug resistance by combining drug activity and gene expression profiles
-
Rickardson, L.; Fryknas, M.; Dhar, S.; Lovborg, H.; Gullbo, J.; Rydaker, M.; Nygren, P.; Gustafsson, M. G.; Larsson, R.; Isaksson, A. Identification of molecular mechanisms for cellular drug resistance by combining drug activity and gene expression profiles Br. J. Cancer 2005, 93 (4) 483-92
-
(2005)
Br. J. Cancer
, vol.93
, Issue.4
, pp. 483-492
-
-
Rickardson, L.1
Fryknas, M.2
Dhar, S.3
Lovborg, H.4
Gullbo, J.5
Rydaker, M.6
Nygren, P.7
Gustafsson, M.G.8
Larsson, R.9
Isaksson, A.10
-
70
-
-
77950095763
-
TGFbeta-mediated upregulation of hepatic miR-181b promotes hepatocarcinogenesis by targeting TIMP3
-
Wang, B.; Hsu, S. H.; Majumder, S.; Kutay, H.; Huang, W.; Jacob, S. T.; Ghoshal, K. TGFbeta-mediated upregulation of hepatic miR-181b promotes hepatocarcinogenesis by targeting TIMP3 Oncogene 2010, 29 (12) 1787-97
-
(2010)
Oncogene
, vol.29
, Issue.12
, pp. 1787-1797
-
-
Wang, B.1
Hsu, S.H.2
Majumder, S.3
Kutay, H.4
Huang, W.5
Jacob, S.T.6
Ghoshal, K.7
-
71
-
-
34848817968
-
Acetylation-dependent signal transduction for type i interferon receptor
-
Tang, X.; Gao, J. S.; Guan, Y. J.; McLane, K. E.; Yuan, Z. L.; Ramratnam, B.; Chin, Y. E. Acetylation-dependent signal transduction for type I interferon receptor Cell 2007, 131 (1) 93-105
-
(2007)
Cell
, vol.131
, Issue.1
, pp. 93-105
-
-
Tang, X.1
Gao, J.S.2
Guan, Y.J.3
McLane, K.E.4
Yuan, Z.L.5
Ramratnam, B.6
Chin, Y.E.7
-
72
-
-
79251573543
-
Initial characterization of the human central proteome
-
Burkard, T. R.; Planyavsky, M.; Kaupe, I.; Breitwieser, F. P.; Burckstummer, T.; Bennett, K. L.; Superti-Furga, G.; Colinge, J. Initial characterization of the human central proteome BMC Syst. Biol. 2011, 5, 17
-
(2011)
BMC Syst. Biol.
, vol.5
, pp. 17
-
-
Burkard, T.R.1
Planyavsky, M.2
Kaupe, I.3
Breitwieser, F.P.4
Burckstummer, T.5
Bennett, K.L.6
Superti-Furga, G.7
Colinge, J.8
-
73
-
-
84871997867
-
Digestion and depletion of abundant proteins improves proteomic coverage
-
Fonslow, B. R.; Stein, B. D.; Webb, K. J.; Xu, T.; Choi, J.; Park, S. K.; Yates, J. R., 3rd Digestion and depletion of abundant proteins improves proteomic coverage Nat. Methods 2013, 10 (1) 54-6
-
(2013)
Nat. Methods
, vol.10
, Issue.1
, pp. 54-56
-
-
Fonslow, B.R.1
Stein, B.D.2
Webb, K.J.3
Xu, T.4
Choi, J.5
Park, S.K.6
Yates III, J.R.7
-
74
-
-
84868327851
-
Large-scale quantitative assessment of different in-solution protein digestion protocols reveals superior cleavage efficiency of tandem Lys-C/trypsin proteolysis over trypsin digestion
-
Glatter, T.; Ludwig, C.; Ahrne, E.; Aebersold, R.; Heck, A. J.; Schmidt, A. Large-scale quantitative assessment of different in-solution protein digestion protocols reveals superior cleavage efficiency of tandem Lys-C/trypsin proteolysis over trypsin digestion J. Proteome Res. 2012, 11 (11) 5145-56
-
(2012)
J. Proteome Res.
, vol.11
, Issue.11
, pp. 5145-5156
-
-
Glatter, T.1
Ludwig, C.2
Ahrne, E.3
Aebersold, R.4
Heck, A.J.5
Schmidt, A.6
-
75
-
-
84855433177
-
Rapid and efficient protein enzymatic digestion: An experimental comparison
-
Dycka, F.; Bobal, P.; Mazanec, K.; Bobalova, J. Rapid and efficient protein enzymatic digestion: an experimental comparison Electrophoresis 2012, 33 (2) 288-95
-
(2012)
Electrophoresis
, vol.33
, Issue.2
, pp. 288-295
-
-
Dycka, F.1
Bobal, P.2
Mazanec, K.3
Bobalova, J.4
|