메뉴 건너뛰기




Volumn 30, Issue 7, 2013, Pages 1495-1499

Synthetic biology of phenotypic adaptation in vertebrates: The next frontier

Author keywords

ancestral phenotypes; molecular adaptation; phenotypic adaptation; visual pigments

Indexed keywords

VISUAL PIGMENT;

EID: 84879349129     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mst075     Document Type: Review
Times cited : (11)

References (33)
  • 1
    • 80051972835 scopus 로고    scopus 로고
    • H-bond network around retinal regulates the evolution of ultraviolet and violet vision
    • Altun A, Morokuma K, Yokoyama S. 2011. H-bond network around retinal regulates the evolution of ultraviolet and violet vision. ACS Chem Biol. 6:775-780.
    • (2011) ACS Chem Biol , vol.6 , pp. 775-780
    • Altun, A.1    Morokuma, K.2    Yokoyama, S.3
  • 2
    • 0028289475 scopus 로고
    • Molecular determinants of human red/green color discrimination
    • DOI 10.1016/0896-6273(94)90320-4
    • Asenjo AB, Rim J, Oprian DD. 1994. Molecular determinants of human red/green color discrimination. Neuron 12:1131-1138. (Pubitemid 24178204)
    • (1994) Neuron , vol.12 , Issue.5 , pp. 1131-1138
    • Asenjo, A.B.1    Rim, J.2    Oprian, D.D.3
  • 3
    • 33645691679 scopus 로고    scopus 로고
    • Evolution of hormone-receptor complexity by molecular exploitation
    • Bridgham JT, Carroll SM, Thornton JW. 2006. Evolution of hormone-receptor complexity by molecular exploitation. Science 312:97-101.
    • (2006) Science , vol.312 , pp. 97-101
    • Bridgham, J.T.1    Carroll, S.M.2    Thornton, J.W.3
  • 4
    • 34548018528 scopus 로고    scopus 로고
    • Mechanistic approaches to the study of evolution: The functional synthesis
    • DOI 10.1038/nrg2160, PII NRG2160
    • Dean AM, Thornton JW. 2007. Mechanistic approaches to the study of evolution: the functional synthesis. Nat Rev Genet. 8:675-688. (Pubitemid 47281989)
    • (2007) Nature Reviews Genetics , vol.8 , Issue.9 , pp. 675-688
    • Dean, A.M.1    Thornton, J.W.2
  • 5
    • 0025306687 scopus 로고
    • Role of the intradiscal domain in rhodopsin assembly and function
    • Doi T, Molday RS, Khorana HG. 1990. Role of the intradiscal domain in rhodopsin assembly and function. Proc Natl Acad Sci U S A. 87: 4991-4995.
    • (1990) Proc Natl Acad Sci U S A , vol.87 , pp. 4991-4995
    • Doi, T.1    Molday, R.S.2    Khorana, H.G.3
  • 7
    • 77955584075 scopus 로고    scopus 로고
    • Analyzing protein structure and function using ancestral gene reconstruction
    • Harms MJ, Thornton JW. 2010. Analyzing protein structure and function using ancestral gene reconstruction. Curr Opin Struct Biol. 20: 360-366.
    • (2010) Curr Opin Struct Biol , vol.20 , pp. 360-366
    • Harms, M.J.1    Thornton, J.W.2
  • 8
    • 51649108111 scopus 로고    scopus 로고
    • The origin of adaptive phenotypes
    • Hughes AL. 2008. The origin of adaptive phenotypes. Proc Natl Acad Sci U S A. 105:13193-13194.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 13193-13194
    • Hughes, A.L.1
  • 9
    • 0023764283 scopus 로고
    • Pattern of nucleotide substitution at major histocompatibility complex class i loci reveals overdominant selection
    • Hughes AL, Nei M. 1988. Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335:167-170.
    • (1988) Nature , vol.335 , pp. 167-170
    • Hughes, A.L.1    Nei, M.2
  • 11
    • 0005110277 scopus 로고
    • Adaptation
    • Lewontin RC. 1979. Adaptation. Sci Am. 239:156-169.
    • (1979) Sci Am , vol.239 , pp. 156-169
    • Lewontin, R.C.1
  • 12
    • 0017098756 scopus 로고
    • Vitamin A1/A2-based visual pigment mixtures in cones of the rudd
    • Loew ER, Dartnall HJ. 1976. Vitamin A1/A2-based visual pigment mixtures in cones of the rudd. Vision Res. 16:891-896.
    • (1976) Vision Res , vol.16 , pp. 891-896
    • Loew, E.R.1    Dartnall, H.J.2
  • 13
    • 0018194893 scopus 로고
    • The ecology of cone pigments in teleost fishes
    • DOI 10.1016/0042-6989(78)90150-5
    • Loew ER, Lythgoe JN. 1978. The ecology of cone pigments in teleost fishes. Vision Res. 18:715-722. (Pubitemid 8358749)
    • (1978) Vision Research , vol.18 , Issue.6 , pp. 715-722
    • Loew, E.R.1    Lythgoe, J.N.2
  • 17
    • 77957959525 scopus 로고    scopus 로고
    • The neutral theory of molecular evolution in the genomic era
    • Nei M, Suzuki Y, Nozawa M. 2010. The neutral theory of molecular evolution in the genomic era. Annu Rev Genomics Hum Genet. 11: 265-289.
    • (2010) Annu Rev Genomics Hum Genet , vol.11 , pp. 265-289
    • Nei, M.1    Suzuki, Y.2    Nozawa, M.3
  • 18
    • 66149086564 scopus 로고    scopus 로고
    • Reliabilities of identifying positive selection by the branch-site and the site-prediction methods
    • Nozawa M, Suzuki Y, Nei M. 2009a. Reliabilities of identifying positive selection by the branch-site and the site-prediction methods. Proc Natl Acad Sci U S A. 106:6700-6705.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 6700-6705
    • Nozawa, M.1    Suzuki, Y.2    Nei, M.3
  • 19
    • 70349308387 scopus 로고    scopus 로고
    • Response to Yang et al.: Problems with Bayesian methods of detecting positive selection at the DNA sequence level
    • Nozawa M, Suzuki Y, Nei M. 2009b. Response to Yang et al.: problems with Bayesian methods of detecting positive selection at the DNA sequence level. Proc Natl Acad Sci U S A. 106:e96.
    • (2009) Proc Natl Acad Sci U S A , vol.106
    • Nozawa, M.1    Suzuki, Y.2    Nei, M.3
  • 20
    • 34548040966 scopus 로고    scopus 로고
    • Crystal structure of an ancient protein: Evolution by conformational epistasis
    • DOI 10.1126/science.1142819
    • Ortlund EA, Bridgham JT, Redinbo MR, Thornton JW. 2007. Crystal structure of an ancient protein: evolution by conformational epistasis. Science 317:1544-1548. (Pubitemid 47417432)
    • (2007) Science , vol.317 , Issue.5844 , pp. 1544-1548
    • Ortlund, E.A.1    Bridgham, J.T.2    Redinbo, M.R.3    Thornton, J.W.4
  • 21
    • 70450242805 scopus 로고    scopus 로고
    • Exploring protein fitness landscapes by directed evolution
    • Romero PA, Arnold FH. 2009. Exploring protein fitness landscapes by directed evolution. Nat Rev Mol Cell Biol. 10:866-876.
    • (2009) Nat Rev Mol Cell Biol , vol.10 , pp. 866-876
    • Romero, P.A.1    Arnold, F.H.2
  • 22
    • 65549117445 scopus 로고    scopus 로고
    • The green-absorbing Drosophila Rh6 visual pigment contains a blueshifting amino acid substitution that is conserved in vertebrates
    • Salcedo E, Farrell DM, Zheng L, Phistry M, Bagg EE, Britt SG. 2009. The green-absorbing Drosophila Rh6 visual pigment contains a blueshifting amino acid substitution that is conserved in vertebrates. J Biol Chem. 284:5717-5722.
    • (2009) J Biol Chem , vol.284 , pp. 5717-5722
    • Salcedo, E.1    Farrell, D.M.2    Zheng, L.3    Phistry, M.4    Bagg, E.E.5    Britt, S.G.6
  • 24
    • 70350436461 scopus 로고    scopus 로고
    • Evolutionary replacement of UV vision by violet vision in fish
    • Tada T, Altun A, Yokoyama S. 2009. Evolutionary replacement of UV vision by violet vision in fish. Proc Natl Acad Sci U S A. 106: 17457-17462.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 17457-17462
    • Tada, T.1    Altun, A.2    Yokoyama, S.3
  • 25
    • 56549087988 scopus 로고    scopus 로고
    • Neutralism and selectionism: A network-based reconciliation
    • DOI 10.1038/nrg2473, PII NRG2473
    • Wagner A. 2008. Neutralism and selectionism: a network-based reconciliation. Nat Rev Genet. 9:965-974. (Pubitemid 50316424)
    • (2008) Nature Reviews Genetics , vol.9 , Issue.12 , pp. 965-974
    • Wagner, A.1
  • 27
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • DOI 10.1093/molbev/msm088
    • Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591. (Pubitemid 47236688)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1586-1591
    • Yang, Z.1
  • 28
    • 70349312545 scopus 로고    scopus 로고
    • In defense of statistical methods for detecting positive selection
    • Yang Z, Nielsen R, Goldman N. 2009. In defense of statistical methods for detecting positive selection. Proc Natl Acad Sci U S A. 106:E95.
    • (2009) Proc Natl Acad Sci U S A , vol.106
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3
  • 29
    • 52949133360 scopus 로고    scopus 로고
    • Evolution of dim-light and color visual pigments
    • Yokoyama S. 2008. Evolution of dim-light and color visual pigments. Annu Rev Genomics Hum Genet. 9:259-282.
    • (2008) Annu Rev Genomics Hum Genet , vol.9 , pp. 259-282
    • Yokoyama, S.1
  • 30
    • 84871238113 scopus 로고    scopus 로고
    • Synthesis of experimental molecular biology and evolutionary biology: An example from the world of vision
    • Yokoyama S. 2012. Synthesis of experimental molecular biology and evolutionary biology: an example from the world of vision. Bioscience 62:939-948.
    • (2012) Bioscience , vol.62 , pp. 939-948
    • Yokoyama, S.1
  • 31
    • 0034857787 scopus 로고    scopus 로고
    • The molecular genetics and evolution of red and green color vision in vertebrates
    • Yokoyama S, Radlwimmer FB. 2001. The molecular genetics and evolution of red and green color vision in vertebrates. Genetics 158: 1697-1710. (Pubitemid 32783150)
    • (2001) Genetics , vol.158 , Issue.4 , pp. 1697-1710
    • Yokoyama, S.1    Radlwimmer, F.B.2
  • 32
    • 51649122492 scopus 로고    scopus 로고
    • Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrates
    • Yokoyama S, Tada T, Zhang H, Britt L. 2008. Elucidation of phenotypic adaptations: molecular analyses of dim-light vision proteins in vertebrates. Proc Natl Acad Sci U S A. 105:13480-13485.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 13480-13485
    • Yokoyama, S.1    Tada, T.2    Zhang, H.3    Britt, L.4
  • 33
    • 55749097435 scopus 로고    scopus 로고
    • Molecular basis of spectral tuning in the red- and green-sensitive (M/LWS) pigments in vertebrates
    • Yokoyama S, Yang H, Starmer WT. 2008. Molecular basis of spectral tuning in the red- and green-sensitive (M/LWS) pigments in vertebrates. Genetics 179:2037-2043.
    • (2008) Genetics , vol.179 , pp. 2037-2043
    • Yokoyama, S.1    Yang, H.2    Starmer, W.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.