Antimicrobial potential of deep surface sediment associated bacteria from the Sea of Japan

World Journal of Microbiology and Biotechnology

Volumn 29, Issue 7, 2013, Pages 1169-1177

  Romanenko, Lyudmila A ^a   Tanaka, Naoto ^b   Kalinovskaya, Natalia I ^a   Mikhailov, Valery V ^a  

^a PACIFIC INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b TOKYO UNIVERSITY OF AGRICULTURE   (Japan)

Author keywords

Antimicrobial activity; Deep surface sediments; Isocoumarin; Paenibacillus; Phylogeny

Indexed keywords

ANTI-MICROBIAL ACTIVITY; ISOCOUMARIN; PAENIBACILLUS; PHYLOGENY; SURFACE SEDIMENTS;

BACTERIA; BACTERIOLOGY; BIOLOGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; SEDIMENTOLOGY; SPECTRUM ANALYSIS; STRAIN;

SURFICIAL SEDIMENTS;

ANTIINFECTIVE AGENT; BACTERIAL DNA;

ARTICLE; BACTERIUM; BIODIVERSITY; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; JAPAN; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; SEA; SEDIMENT; SPECTROSCOPY;

ANTI-INFECTIVE AGENTS; BACTERIA; BIODIVERSITY; DNA, BACTERIAL; GEOLOGIC SEDIMENTS; JAPAN; MOLECULAR SEQUENCE DATA; OCEANS AND SEAS; SEQUENCE ANALYSIS, DNA; SPECTRUM ANALYSIS;

ACTINOBACTERIA; ALPHAPROTEOBACTERIA; ALTEROMONAS; BACILLUS (BACTERIUM); BACTERIA (MICROORGANISMS); BREVIBACILLUS; FIRMICUTES; GAMMAPROTEOBACTERIA; HALOMONAS; MARINOBACTER; NOCARDIOPSIS; PAENIBACILLUS; PAENIBACILLUS SP.; PSEUDOALTEROMONAS; STREPTOMYCES; SULFITOBACTER;

EID: 84879163988     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-013-1276-6     Document Type: Article

References (28)

1. Bowman JP, McCuaig RD (2003) Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment. Appl Environ Microbiol 69: 2463-2483.
2. Bredholt H, Fjaervik E, Johnsen G, Zotchev SB (2008) Actinomycetes from sediments in the Trondheim Fjord, Norway: diversity and biological activity. Mar Drugs 6: 12-24.
3. Bull AT, Stach JEM (2007) Marine actinobacteria: new opportunities for natural product search and discovery. Trends Microbiol 15: 491-499.
4. Gärtner A, Ohlendorf B, Schulz D, Zinecker H, Wiese J, Imhoff JF (2011) Levantilides A and B, 20-membered macrolides from a Micromonospora strain isolated from the Mediterranean deep sea sediment. Mar Drugs 9: 98-108. doi: 10. 3390/md9010098.
5. Hamdache A, Lamarti A, Aleu J, Collado IG (2011) Non-peptide metabolites from the genus Bacillus. J Nat Prod 74: 893-899.
6. Jeong S-Y, Shin HJ, Kim TS, Lee H-S, Park S-K, Kim HM (2006) Streptokordin, a new cytotoxic compound of the methylpyridine class from a marine-derived Streptomyces sp. KORDI-3238. J Antibiot 59: 234-240.
7. Kouridaki I, Polymenakou PN, Tselepides A, Mandalakis M, Smith KL Jr (2010) Phylogenetic diversity of sediment bacteria from the deep Northeastern Pacific Ocean: a comparison with the deep Eastern Mediterranean Sea. Int Microbiol 13: 143-150.
8. Lauro FM, Bartlett DH (2008) Prokaryotic lifestyles in deep sea habitats. Extremophiles 12: 15-25.
9. Li L, Kato C, Horikoshi K (1999) Bacterial diversity in deep-sea sediments from different depths. Biodiv Conserv 8: 659-677.
10. Li H, Yu Y, Luo W, Zeng Y, Chen B (2009) Bacterial diversity in surface sediments from the Pacific Arctic Ocean. Extremophiles 13: 233-256.
11. Manam RR, Teisan S, White DJ, Nicholson B, Grodberg J, Neuteboom STC, Lam KS, Mosca DA, Lloyd GK, Potts BCM (2005) Lajollamycin, a nitro-tetraene spiro-β-lactone-γ-lactam antibiotic from the marine actinomycete Streptomyces nodosus. J Nat Prod 68: 240-243.
12. Morikawa M, Daido H, Takao T, Murata S, Shimonishi Y, Imanaka T (1993) A new lipopeptide biosurfactant produced by Arthrobacter sp. strain MIS38. J Bacteriol 175: 6459-6466.
13. Nakashima T, Anzai K, Suzuki R, Kuwahara N, Takeshita S, Kamanoto A, Ando K (2009) Productivity of bioactive compounds in Streptomyces species isolated from Nagasaki marine environments. Actinomycetologica 23: 16-20.
14. Okazaki H, Kishi T, Beppu T, Arima K (1975) Letter: a new antibiotic, baciphelacin. J Antibiot 28: 717-719.
15. Pearson W, Lipman DJ (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85: 2444-2448.
16. Pettit RK (2011) Culturability and secondary metabolite diversity of extreme microbes: expanding contribution of deep sea and deep-sea vent microbes to natural product discovery. Mar Biotechnol 13: 1-11.
17. Romanenko LA, Schumann P, Rohde M, Lysenko AM, Mikhailov VV, Stackebrandt E (2002) Psychrobactersubmarinus sp. nov. and Psychrobactermarincola sp. nov., psychrophilic halophiles from marine environments. Int J Syst Evol Microbiol 52: 1291-1297.
18. Romanenko LA, Uchino M, Frolova GM, Tanaka N, Kalinovskaya NI, Latyshev N, Mikhailov VV (2007) Sphingomonas molluscorum sp. nov., a novel marine isolate with antimicrobial activity. Int J Syst Evol Microbiol 57: 358-363.
19. Romanenko LA, Uchino M, Kalinovskaya NI, Mikhailov VV (2008) Isolation, phylogenetic analysis and screening of marine mollusc-associated bacteria for antimicrobial, hemolytic and surface activities. Microbiol Res 163: 633-644.
20. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
21. Sato T, Nagai K, Suzuki K, Morioka M, Saito T (1992) A new isocoumarin antibiotic, Y-05460 M-A. J Antibiot 45: 1949-1952.
22. Shida O, Takagi H, Kadowaki K, Nakamura LK, Komagata K (1997) Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int J Syst Bacteriol 47: 289-298.
23. Shin J, Seo Y, Lee HS, Rho JR, Mo SJ (2003) A new cyclic peptide from a marine derived bacterium of the genus Nocardiopsis. J Nat Prod 66: 883-884.
24. Soria-Mercado IE, Prieto-Davo A, Jensen PR, Fenical W (2005) Antibiotic terpenoid chloro-dihydroquinones from a new marine actinomycete. J Nat Prod 68: 904-910.
25. Stackebrandt E, Ebers J (2006) Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 45: 153-155.
26. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. doi: 10. 1093/molbev/msr121.
27. Thompson JD, Gibson TJ, Higgins DG (2002) Multiple sequence alignment using ClustalW and ClustalX. Chap 2. In: Baxevanis AD, Stein LD, Stormo GD (eds) Current protocol bioinformatics, Wiley, New York, unit 2. 3. 1-2. 3. 22.
28. Urakawa H, Kita-Tsukamoto K, Ohwada K (1999) Microbial diversity in marine sediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis. Microbiology 145: 3305-3315.