Isolation, phylogenetic analysis and screening of marine mollusc-associated bacteria for antimicrobial, hemolytic and surface activities

Microbiological Research

Volumn 163, Issue 6, 2008, Pages 633-644

  Romanenko, Lyudmila A ^a   Uchino, Masataka ^b   Kalinovskaya, Natalia I ^a   Mikhailov, Valery V ^a  

^a PACIFIC INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

16S rRNA phylogeny; Antimicrobial activity; Culturable bacteria; Diversity; Hemolysis; Marine mollusca; Surface activity

Indexed keywords

BACTERIOLOGY; BIOMOLECULES; METABOLITES;

16S RRNA PHYLOGENY; ANTIMICROBIAL ACTIVITY; CULTURABLE BACTERIA; DIVERSITY; HEMOLYSIS; MARINE MOLLUSCA; SURFACE ACTIVITY;

STRAIN;

ANTIMICROBIAL ACTIVITY; BACTERIUM; BIVALVE; GENETIC ANALYSIS; HETEROTROPHY; PHYLOGENY; SHELL;

PACIFIC OCEAN; SEA OF JAPAN;

ACTINOBACTERIA; AEROMONAS; ALPHAPROTEOBACTERIA; ANADARA; ARCIDAE; BACILLUS (BACTERIUM); BACILLUS PUMILUS; BACTERIA (MICROORGANISMS); BACTEROIDES; BACTEROIDES (CLASS); BIVALVIA; CYTOPHAGA; FIRMICUTES; FLAVOBACTERIUM; GAMMAPROTEOBACTERIA; MOLLUSCA; NEGIBACTERIA; PAENIBACILLUS; POSIBACTERIA; PSEUDOALTEROMONAS; PSEUDOMONAS; SACCHAROTHRIX; SPHINGOMONAS;

EID: 53949095880     PISSN: 09445013     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.micres.2006.10.001     Document Type: Article

References (34)

1. Austin B. Novel pharmaceutical compounds from marine bacteria. J. Appl. Bacteriol. 67 (1989) 461-470
2. Cho J.-C., and Giovannoni S. Oceanicola granulosus gen. nov., sp. nov. and Oceanicola batsensis sp. nov., poly-β-hydroxybutyrate-producing marine bacteria in the order "Rhodobacterales". Int. J. Syst. Evol. Microbiol. 54 (2004) 1129-1136
3. Distel D.L., DeLong E.F., and Waterbury J.B. Phylogenetic characterization and in situ localization of the bacterial symbiont of shipworms (Teredinidae:Bivalvia) by using 16S rRNA sequence analysis and oligodeoxynucleotide probe hybridization. Appl. Environ. Microbiol. 57 (1991) 2376-2382
4. Eilers H., Pernthaler J., Glöckner F.O., and Amann R. Culturability and in situ abundance of pelagic bacteria from the North Sea. Appl. Environ. Microbiol. 66 (2000) 3044-3051
5. Faulkner D.J. Marine natural products. Nat. Prod. Rep. 16 (1999) 155-198
6. Felsenstein J. PHYLIP (phylogenetic inference package) version 3.5.1 (1993), Department of Genetics, University of Washington, Seattle, USA
7. Fenical W. Chemical studies of marine bacteria: developing a new resource. Chem. Rev. 93 (1993) 1673-1683
8. Gauthier M.J., and Flatau G.N. Antibacterial activity of marine violet-pigmented Alteromonas with special reference to the productions of brominated compounds. Can. J. Microbiol. 22 (1976) 1612-1619
9. Gregersen T. Rapid method for distinction of Gram-negative from Gram-positive bacteria. Eur. J. Appl. Microbiol. Biotechnol. 5 (1978) 123-127
10. Holmström C., and Kjelleberg S. Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents. FEMS Microbiol. Ecol. 30 (1999) 285-293
11. Holmström C., Egan S., Franks A., McCloy S., and Kjelleberg S. Antifouling activities expressed by marine surface associated Pseudoalteromonas species. FEMS Microbiol. Ecol. 41 (2002) 47-58
12. Kalinovskaya N.I., Kuznetsova T.A., Ivanova E.P., Romanenko L.A., Voinov V.G., Huth F., and Laatsch H. Characterization of surfactin-like cyclic depsipeptides synthesized by Bacillus pumilus from ascidian Halocynthia aurantium. Mar. Biotechnol. 4 (2002) 179-188
13. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16 (1980) 111-120
14. Kurahashi M., and Yokota A. A preliminary report of phylogenetic diversity of bacterial strains isolated from marine creatures. J. Gen. Appl. Microbiol. 48 (2002) 251-260
15. Leifson E. Determination of carbohydrate metabolism of marine bacteria. J. Bacteriol. 85 (1963) 1183-1184
16. Long R.A., and Azam F. Antagonistic interactions among marine pelagic bacteria. Appl. Environ. Microbiol. 67 (2001) 4975-4983
17. Mikhailov V.V., Romanenko L.A., and Ivanova E.P. The genus Alteromonas and related Proteobacteria. In: Dworkin M., Falkow S., Rosenberg E., Schleifer K.-H., and Stackebrandt E. (Eds). The Prokaryotes. Release 3.10. third ed. (2002), Springer, New York
18. Morikawa M., Daido H., Takao T., Murata S., Shimonishi Y., and Imanaka T. A new lipopeptide biosurfactant produced by Arthrobacter sp. strain MIS38. J. Bacteriol. 175 (1993) 6459-6466
19. Pearson W., and Lipman D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85 (1988) 2444-2448
20. Romanenko L.A., Kalinovskaya N.I., and Mikhailov V.V. Taxonomic composition and biological activity of the microorganisms associated with marine ascidian Halocynthia aurantium. Biologiya Morya (Russ. J. Marine Biol.) 27 (2001) 291-295
21. Romanenko L.A., Lysenko A.M., Mikhailov V.V., and Stackebrandt E. Assignment of "Alteromonas marinoglutinosa" NCIMB 1770 to Pseudoalteromonas mariniglutinosa sp. nov., nom rev., comb. nov. Int. J. Syst. Evol. Microbiol. 53 (2003) 1105-1109
22. Romanenko L.A., Lysenko A.M., Rohde M., Mikhailov V.V., and Stackebrandt E. Psychrobacter maritimus sp. nov., and Psychrobacter arenosus sp. nov., isolated from coastal sea-ice and sediments of the Sea of Japan. Int. J. Syst. Evol. Microbiol. 54 (2004) 1741-1745
23. Romanenko L.A., Uchino M., Falsen E., Lysenko A.M., Zhukova N.V., and Mikhailov V.V. Pseudomonas xanthomarina sp. nov., a novel bacterium isolated from marine ascidian. J. Gen. Appl. Microbiol. 51 (2005) 65-71
24. Ron E.Z., and Rosenberg E. Natural roles of biosurfactants. Environ. Microbiol. 3 (2001) 229-236
25. Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
26. Shida O., Takagi H., Kadowaki K., Nakamura L.K., and Komagata K. Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int. J. Syst. Bacteriol. 47 (1997) 289-298
27. Singh M.P., Petersen P.J., Weiss W.J., Kong F., and Greenstein M. Saccharomicins, novel heptadecaglycoside antibiotics produced by Saccharothrix espanaensis: antibacterial and mechanistic activities. Antimicrob. Agents Chemother. 44 (2000) 2154-2159
28. Smibert R.M., and Krieg N.R. Phenotypic characterization. In: Gerhardt P., Murray R.G.E., Wood W.A., and Krieg N.R. (Eds). Methods for General and Molecular Bacteriology (1994), American Society for Microbiology, Washington, DC 607-655
29. Stackebrandt E., and Goebel B.M. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44 (1994) 846-849
30. Sugita S., Hirose Y., Matsuo N., and Deguchi Y. Production of the antibacterial substance by Bacillus sp. strain NM 12, an intestinal bacterium of Japanese coastal fish. Aquaculture 165 (1998) 269-280
31. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 24 (1997) 4876-4882
32. von Döhren H. Peptides. In: Vining L.C., and Stuttard C. (Eds). Genetics and Biochemistry of Antibiotic Production (1995), Butterworth-Heinemann, Newton, MA 129-171
33. Wink J.M., Kroppenstedt R.M., Ganguli B.N., Nadkarni S.R., Schumann P., Seibert G., and Stackebrandt E. Three new antibiotic producing species of the genus Amycolatopsis, Amycolatopsis balhimycina sp. nov., A. tolypomycina sp. nov., A. vancoresmycina sp. nov., and description of Amycolatopsis keratiniphila subsp. keratiniphila subsp. nov. and A. keratiniphila subsp. nogabecina subsp. nov. Syst. Appl. Microbiol. 26 (2003) 38-46
34. Yamaguchi T., Kobayashi Y., Adachi K., and Imamura N. Argimicins B and C, new anti-cyanobacterial compounds produced by Sphingomonas sp. M-17. J. Antibiot. 56 (2003) 655-657