MicroRNA expression profiles of porcine skeletal muscle

Animal Genetics

Volumn 41, Issue 5, 2010, Pages 499-508

  Zhou, B ^a   Liu, H L ^a   Shi, F X ^a   Wang, J Y ^b  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

^b YANGZHOU UNIVERSITY   (China)

Author keywords

homology search; microarray; microRNA; pig

Indexed keywords

MICRORNA;

ANIMAL; ARTICLE; DNA MICROARRAY; EXPRESSED SEQUENCE TAG; GENE EXPRESSION PROFILING; GENETIC DATABASE; GENETICS; HUMAN; METABOLISM; MOUSE; SKELETAL MUSCLE; SWINE;

ANIMALS; DATABASES, GENETIC; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION PROFILING; HUMANS; MICE; MICRORNAS; MUSCLE, SKELETAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SUS SCROFA;

ANIMALIA; MUS; SUIDAE; SUS;

EID: 77956487601     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2010.02026.x     Document Type: Article

References (41)

1. Ambros V. (2004) The functions of animal microRNAs. Nature 431, 350 355.
2. Ambros V., Bartel B., Bartel D.P. et al. (2003) A uniform system for microRNA annotation. RNA 9, 277 279.
3. Anderson C., Catoe H. Werner R. (2006) MIR-206 regulates connexin43 expression during skeletal muscle development. Nucleic Acids Research 34, 5863 5871.
4. Barad O., Meiri E., Avniel A. et al. (2004) MicroRNA expression detected by oligonucleotide microarrays: system establishment and expression profiling in human tissues. Genome Research 14, 2486 2494.
5. Bartel D.P. (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116, 281 297.
6. Bentwich I. (2005) Prediction and validation of microRNAs and their targets. FEBS Letters 579, 5904 5910.
7. Bolstad B.M., Irizarry R.A., Astrand M. et al. (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19, 185 193.
8. Brown J.R. Sanseau P. (2005) A computational view of microRNAs and their targets. Drug Discovery Today 10, 595 601.
9. Carthew R.W. (2006) Gene regulation by microRNAs. Current Opinion in Genetics & Development 16, 203 208.
10. Chen J.F., Mandel E.M., Thomson J.M. et al. (2006) The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation. Nature Genetics 38, 228 233.
11. Clop A., Marcq F., Takeda H. et al. (2006) A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep. Nature Genetics 38, 813 818.
12. Collet J.F., Gerin I., Rider M.H. et al. (1997) Human L-3-phosphoserine phosphatase: sequence, expression and evidence for a phosphoenzyme intermediate. FEBS Letters 408, 281 284.
13. Fell D.A. Snell K. (1988) Control analysis of mammalian serine biosynthesis. Feedback inhibition on the final step. Biochemistry Journal 256, 97 101.
14. Fujii H. (2005) Nuclear receptor PPARs and magnesium. Clinical Calcium 15, 52 64.
15. Gao X., Gulari E. Zhou X. (2004) In situ synthesis of oligonucleotide microarrays. Biopolymers 73, 579 596.
16. Griffiths-Jones S. (2004) The microRNA Registry. Nucleic Acids Research 32, D109 11.
17. Griffiths-Jones S., Grocock R.J., van Dongen S. et al. (2006) miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Research 34, D140 4.
18. Huang T.H., Zhu M.J., Li X.Y. et al. (2008) Discovery of porcine microRNAs and profiling from skeletal muscle tissues during development. PLoS ONE 3, e3225.
19. Kim V.N. Nam J.W. (2006) Genomics of microRNA. Trends in Genetics 22, 165 173.
20. Kim H.K., Lee Y.S., Sivaprasad U. et al. (2006) Muscle-specific microRNA miR-206 promotes muscle differentiation. Journal of Cell Biology 174, 677 687.
21. Kim J., Cho I.S., Hong J.S. et al. (2008) Identification and characterization of new microRNAs from pig. Mammalian Genome 19, 570 580.
22. Lai E.C., Tomancak P., Williams R.W. et al. (2003) Computational identification of Drosophila microRNA genes. Genome Biology 4, R42.
23. Lewis B.P., Burge C.B. Bartel D.P. (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120, 15 20.
24. Lim L.P., Lau N.C., Garrett-Engele P. et al. (2005) Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433, 769 773.
25. Liu N., Bezprozvannaya S., Williams A.H. et al. (2008) microRNA-133a regulates cardiomyocyte proliferation and suppresses smooth muscle gene expression in the heart. Genes & Development 22, 3242 3254.
26. Maglott D., Ostell J., Pruitt K.D. et al. (2005) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Research 33, D54 8.
27. McDaneld T.G., Smith T.P., Doumit M.E. et al. (2009) MicroRNA transcriptome profiles during swine skeletal muscle development. BMC Genomics 10, 77.
28. Millar A.A. Waterhouse P.M. (2005) Plant and animal microRNAs: similarities and differences. Functional & Integrative Genomics 5, 129 135.
29. Moro-Furlani A.M., Turner V.S. Hopkinson D.A. (1980) Genetical and biochemical studies on human phosphoserine phosphatase. Annals of Human Genetics 43, 323 333.
30. Ng Kwang Loong S. Mishra S.K. (2007) Unique folding of precursor microRNAs: quantitative evidence and implications for de novo identification. RNA 13, 170 187.
31. Rajewsky N. (2006) microRNA target predictions in animals. Nature Genetics 38 (Suppl. S8 13.
32. Reddy A.M., Zheng Y., Jagadeeswaran G. et al. (2009) Cloning, characterization and expression analysis of porcine microRNAs. BMC Genomics 10, 65.
33. Rehmsmeier M., Steffen P., Hochsmann M. et al. (2004) Fast and effective prediction of microRNA/target duplexes. RNA 10, 1507 1517.
34. Rhoades M.W., Reinhart B.J., Lim L.P. et al. (2002) Prediction of plant microRNA targets. Cell 110, 513 520.
35. van Rooij E., Sutherland L.B., Qi X. et al. (2007) Control of stress-dependent cardiac growth and gene expression by a microRNA. Science 316, 575 579.
36. Rosenberg M.I., Georges S.A., Asawachaicharn A. et al. (2006) MyoD inhibits Fstl1 and Utrn expression by inducing transcription of miR-206. The Journal of Cell Biology 175, 77 85.
37. Sharbati-Tehrani S., Kutz-Lohroff B., Scholven J. et al. (2008) Concatameric cloning of porcine microRNA molecules after assembly PCR. Biochemical and Biophysical Research Communications 375, 484 489.
38. Snell K. Fell D.A. (1990) Metabolic control analysis of mammalian serine metabolism. Advances in Enzyme Regulation 30, 13 32.
39. Valencia-Sanchez M.A., Liu J., Hannon G.J. et al. (2006) Control of translation and mRNA degradation by miRNAs and siRNAs. Genes & Development 20, 515 524.
40. Wu L., Fan J. Belasco J.G. (2006) MicroRNAs direct rapid deadenylation of mRNA. Proceedings of the National Academy of Sciences of the United States of America 103, 4034 4039.
41. Zhang B., Pan X. Anderson T.A. (2006) Identification of 188 conserved maize microRNAs and their targets. FEBS Letters 580, 3753 3762. (Pubitemid 43902810)