-
1
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, et al. (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269: 496-512.
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
Clayton, R.A.4
Kirkness, E.F.5
-
2
-
-
78651305142
-
COMBREX: a project to accelerate the functional annotation of prokaryotic genomes
-
Roberts RJ, Chang YC, Hu Z, Rachlin JN, Anton BP, et al. (2011) COMBREX: a project to accelerate the functional annotation of prokaryotic genomes. Nucleic Acids Res 39: D11-14.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Roberts, R.J.1
Chang, Y.C.2
Hu, Z.3
Rachlin, J.N.4
Anton, B.P.5
-
3
-
-
84862238536
-
CharProtDB: a database of experimentally characterized protein annotations
-
Madupu R, Richter A, Dodson RJ, Brinkac L, Harkins D, et al. (2012) CharProtDB: a database of experimentally characterized protein annotations. Nucleic Acids Res 40: D237-241.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Madupu, R.1
Richter, A.2
Dodson, R.J.3
Brinkac, L.4
Harkins, D.5
-
4
-
-
15944426144
-
Enzyme genomics: Application of general enzymatic screens to discover new enzymes
-
Kuznetsova E, Proudfoot M, Sanders SA, Reinking J, Savchenko A, et al. (2005) Enzyme genomics: Application of general enzymatic screens to discover new enzymes. FEMS Microbiol Rev 29: 263-279.
-
(2005)
FEMS Microbiol Rev
, vol.29
, pp. 263-279
-
-
Kuznetsova, E.1
Proudfoot, M.2
Sanders, S.A.3
Reinking, J.4
Savchenko, A.5
-
5
-
-
49649126700
-
High throughput screening of purified proteins for enzymatic activity
-
Proudfoot M, Kuznetsova E, Sanders SA, Gonzalez CF, Brown G, et al. (2008) High throughput screening of purified proteins for enzymatic activity. Methods Mol Biol 426: 331-341.
-
(2008)
Methods Mol Biol
, vol.426
, pp. 331-341
-
-
Proudfoot, M.1
Kuznetsova, E.2
Sanders, S.A.3
Gonzalez, C.F.4
Brown, G.5
-
6
-
-
4544222488
-
Enzyme activity fingerprinting with substrate cocktails
-
Goddard JP, Reymond JL, (2004) Enzyme activity fingerprinting with substrate cocktails. J Am Chem Soc 126: 11116-11117.
-
(2004)
J Am Chem Soc
, vol.126
, pp. 11116-11117
-
-
Goddard, J.P.1
Reymond, J.L.2
-
7
-
-
77951216021
-
Activity-based proteomics of enzyme superfamilies: serine hydrolases as a case study
-
Simon GM, Cravatt BF, (2010) Activity-based proteomics of enzyme superfamilies: serine hydrolases as a case study. J Biol Chem 285: 11051-11055.
-
(2010)
J Biol Chem
, vol.285
, pp. 11051-11055
-
-
Simon, G.M.1
Cravatt, B.F.2
-
8
-
-
50649112213
-
Activity-based protein profiling: from enzyme chemistry to proteomic chemistry
-
Cravatt BF, Wright AT, Kozarich JW, (2008) Activity-based protein profiling: from enzyme chemistry to proteomic chemistry. Annu Rev Biochem 77: 383-414.
-
(2008)
Annu Rev Biochem
, vol.77
, pp. 383-414
-
-
Cravatt, B.F.1
Wright, A.T.2
Kozarich, J.W.3
-
9
-
-
17644397303
-
Functionalization of thioctic acid-capped gold nanoparticles for specific immobilization of histidine-tagged proteins
-
Abad JM, Mertens SF, Pita M, Fernandez VM, Schiffrin DJ, (2005) Functionalization of thioctic acid-capped gold nanoparticles for specific immobilization of histidine-tagged proteins. J Am Chem Soc 127: 5689-5694.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 5689-5694
-
-
Abad, J.M.1
Mertens, S.F.2
Pita, M.3
Fernandez, V.M.4
Schiffrin, D.J.5
-
10
-
-
79251503264
-
The influence of the chemical and structural features of xylan on the physical properties of its derived hydrogels
-
Fonseca Silva TC, Habibi Y, Colodette JL, Lucia LA, (2011) The influence of the chemical and structural features of xylan on the physical properties of its derived hydrogels. Soft Matter 7: 1090-1099.
-
(2011)
Soft Matter
, vol.7
, pp. 1090-1099
-
-
Fonseca Silva, T.C.1
Habibi, Y.2
Colodette, J.L.3
Lucia, L.A.4
-
11
-
-
76749155857
-
New structural and functional defects in polyphosphate deficient bacteria: a cellular and proteomic study
-
Varela C, Mauriaca C, Paradela A, Albar JP, Jerez CA, et al. (2010) New structural and functional defects in polyphosphate deficient bacteria: a cellular and proteomic study. BMC Microbiol 10: 7.
-
(2010)
BMC Microbiol
, vol.10
, pp. 7
-
-
Varela, C.1
Mauriaca, C.2
Paradela, A.3
Albar, J.P.4
Jerez, C.A.5
-
12
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins DN, Pappin DJ, Creasy DM, Cottrell JS, (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20: 3551-3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
13
-
-
77956580439
-
Diversity of glycosyl hydrolases from cellulose-depleting communities enriched from casts of two earthworm species
-
Beloqui A, Nechitaylo TY, Lopez-Cortes N, Ghazi A, Guazzaroni ME, et al. (2010) Diversity of glycosyl hydrolases from cellulose-depleting communities enriched from casts of two earthworm species. Appl Environ Microbiol 76: 5934-5946.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 5934-5946
-
-
Beloqui, A.1
Nechitaylo, T.Y.2
Lopez-Cortes, N.3
Ghazi, A.4
Guazzaroni, M.E.5
-
14
-
-
0031796722
-
Quantitative Screening of Hydrolase Libraries Using pH Indicators: Identifying Active and Enantioselective Hydrolases
-
Janes LE, Löwendahl C, Kazlauskas RJ, (1998) Quantitative Screening of Hydrolase Libraries Using pH Indicators: Identifying Active and Enantioselective Hydrolases. Chemistry- A European Journal 4: 2324-2331.
-
(1998)
Chemistry - A European Journal
, vol.4
, pp. 2324-2331
-
-
Janes, L.E.1
Löwendahl, C.2
Kazlauskas, R.J.3
-
15
-
-
79952806616
-
Catalytic mechanism and three-dimensional structure of adenine deaminase
-
Kamat SS, Bagaria A, Kumaran D, Holmes-Hampton GP, Fan H, et al. (2011) Catalytic mechanism and three-dimensional structure of adenine deaminase. Biochemistry 50: 1917-1927.
-
(2011)
Biochemistry
, vol.50
, pp. 1917-1927
-
-
Kamat, S.S.1
Bagaria, A.2
Kumaran, D.3
Holmes-Hampton, G.P.4
Fan, H.5
-
16
-
-
0020321128
-
A critical reexamination of the continuous spectrophotometric assay for adenosine deaminase
-
Murphy J, Baker DC, Behling C, Turner RA, (1982) A critical reexamination of the continuous spectrophotometric assay for adenosine deaminase. Anal Biochem 122: 328-337.
-
(1982)
Anal Biochem
, vol.122
, pp. 328-337
-
-
Murphy, J.1
Baker, D.C.2
Behling, C.3
Turner, R.A.4
-
17
-
-
0003443850
-
-
3rd ed. Deerfield Beach, FL: Verlag Chemie
-
Bergmeyer HU (1983). Methods of Enzymatic Analysis, 3rd ed. Deerfield Beach, FL: Verlag Chemie. pp. 135-136.
-
(1983)
Methods of Enzymatic Analysis
, pp. 135-136
-
-
Bergmeyer, H.U.1
-
18
-
-
79955808268
-
Extracellular production and characterization of Streptomyces X-prolyl dipeptidyl aminopeptidase
-
Hatanaka T, Yamasato A, Arima J, Usuki H, Yamamoto Y, et al. (2011) Extracellular production and characterization of Streptomyces X-prolyl dipeptidyl aminopeptidase. Appl Biochem Biotechnol 164: 475-486.
-
(2011)
Appl Biochem Biotechnol
, vol.164
, pp. 475-486
-
-
Hatanaka, T.1
Yamasato, A.2
Arima, J.3
Usuki, H.4
Yamamoto, Y.5
-
19
-
-
77749310273
-
Biochemical characterization of three putative ATPases from a new type IV secretion system of Aeromonas veronii plasmid pAC3249A
-
Rangrez AY, Abajy MY, Keller W, Shouche Y, Grohmann E, (2010) Biochemical characterization of three putative ATPases from a new type IV secretion system of Aeromonas veronii plasmid pAC3249A. BMC Biochem 11: 10.
-
(2010)
BMC Biochem
, vol.11
, pp. 10
-
-
Rangrez, A.Y.1
Abajy, M.Y.2
Keller, W.3
Shouche, Y.4
Grohmann, E.5
-
20
-
-
3342922088
-
A microcolorimetric method for the determination of inorganic phosphorus
-
Taussky HH, Shorr E, (1953) A microcolorimetric method for the determination of inorganic phosphorus. J Biol Chem 202: 675-685.
-
(1953)
J Biol Chem
, vol.202
, pp. 675-685
-
-
Taussky, H.H.1
Shorr, E.2
-
21
-
-
50549172296
-
Studies on sodium-potassium-activated adenosine triphosphatase. I. Quantitative distribution in several tissues of the cat
-
Bonting SL, Simon KA, Hawkins NM, (1961) Studies on sodium-potassium-activated adenosine triphosphatase. I. Quantitative distribution in several tissues of the cat. Arch Biochem Biophys 95: 416-423.
-
(1961)
Arch Biochem Biophys
, vol.95
, pp. 416-423
-
-
Bonting, S.L.1
Simon, K.A.2
Hawkins, N.M.3
-
22
-
-
2142693753
-
GTP cyclohydrolase I: purification, characterization, and effects of inhibition on nitric oxide synthase in nocardia species
-
He A, Rosazza JP, (2003) GTP cyclohydrolase I: purification, characterization, and effects of inhibition on nitric oxide synthase in nocardia species. Appl Environ Microbiol 69: 7507-7513.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 7507-7513
-
-
He, A.1
Rosazza, J.P.2
-
23
-
-
0032561180
-
Biosynthesis of pteridines. NMR studies on the reaction mechanisms of GTP cyclohydrolase I, pyruvoyltetrahydropterin synthase, and sepiapterin reductase
-
Bracher A, Eisenreich W, Schramek N, Ritz H, Gotze E, et al. (1998) Biosynthesis of pteridines. NMR studies on the reaction mechanisms of GTP cyclohydrolase I, pyruvoyltetrahydropterin synthase, and sepiapterin reductase. J Biol Chem 273: 28132-28141.
-
(1998)
J Biol Chem
, vol.273
, pp. 28132-28141
-
-
Bracher, A.1
Eisenreich, W.2
Schramek, N.3
Ritz, H.4
Gotze, E.5
-
24
-
-
19344363636
-
Segmentally variable genes: a new perspective on adaptation
-
Zheng Y, Roberts RJ, Kasif S, (2004) Segmentally variable genes: a new perspective on adaptation. PLoS Biol 2: E81.
-
(2004)
PLoS Biol
, vol.2
-
-
Zheng, Y.1
Roberts, R.J.2
Kasif, S.3
-
25
-
-
56849102578
-
In vivo interactome of Helicobacter pylori urease revealed by tandem affinity purification
-
Stingl K, Schauer K, Ecobichon C, Labigne A, Lenormand P, et al. (2008) In vivo interactome of Helicobacter pylori urease revealed by tandem affinity purification. Mol Cell Proteomics 7: 2429-2441.
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 2429-2441
-
-
Stingl, K.1
Schauer, K.2
Ecobichon, C.3
Labigne, A.4
Lenormand, P.5
-
26
-
-
78651330012
-
BRENDA, the enzyme information system in 2011
-
Scheer M, Grote A, Chang A, Schomburg I, Munaretto C, et al. (2011) BRENDA, the enzyme information system in 2011. Nucleic Acids Res 39: D670-676.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Scheer, M.1
Grote, A.2
Chang, A.3
Schomburg, I.4
Munaretto, C.5
-
27
-
-
65449142126
-
Oxidative stress-induced peptidoglycan deacetylase in Helicobacter pylori
-
Wang G, Olczak A, Forsberg LS, Maier RJ, (2009) Oxidative stress-induced peptidoglycan deacetylase in Helicobacter pylori. J Biol Chem 284: 6790-6800.
-
(2009)
J Biol Chem
, vol.284
, pp. 6790-6800
-
-
Wang, G.1
Olczak, A.2
Forsberg, L.S.3
Maier, R.J.4
-
28
-
-
78049430106
-
Peptidoglycan deacetylation in Helicobacter pylori contributes to bacterial survival by mitigating host immune responses
-
Wang G, Maier SE, Lo LF, Maier G, Dosi S, et al. (2010) Peptidoglycan deacetylation in Helicobacter pylori contributes to bacterial survival by mitigating host immune responses. Infect Immun 78: 4660-4666.
-
(2010)
Infect Immun
, vol.78
, pp. 4660-4666
-
-
Wang, G.1
Maier, S.E.2
Lo, L.F.3
Maier, G.4
Dosi, S.5
-
29
-
-
84872168801
-
Helicobacter pylori peptidoglycan modifications confer lysozyme resistance and contribute to survival in the host
-
Wang G, Lo LF, Forsberg LS, Maier RJ, (2012) Helicobacter pylori peptidoglycan modifications confer lysozyme resistance and contribute to survival in the host. MBio 3: e00409-00412.
-
(2012)
MBio
, vol.3
-
-
Wang, G.1
Lo, L.F.2
Forsberg, L.S.3
Maier, R.J.4
-
30
-
-
79955734425
-
The structure of Helicobacter pylori HP0310 reveals an atypical peptidoglycan deacetylase
-
Shaik MM, Cendron L, Percudani R, Zanotti G, (2011) The structure of Helicobacter pylori HP0310 reveals an atypical peptidoglycan deacetylase. PLoS One 6: e19207.
-
(2011)
PLoS One
, vol.6
-
-
Shaik, M.M.1
Cendron, L.2
Percudani, R.3
Zanotti, G.4
-
31
-
-
33747333106
-
Use of Dinitrosalicylic Acid Reagent for Determination of Reducing Sugar
-
Miller GL, (1959) Use of Dinitrosalicylic Acid Reagent for Determination of Reducing Sugar. Analytical Chemistry 31: 426-428.
-
(1959)
Analytical Chemistry
, vol.31
, pp. 426-428
-
-
Miller, G.L.1
-
32
-
-
0032508046
-
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
-
Cole ST, Brosch R, Parkhill J, Garnier T, Churcher C, et al. (1998) Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393: 537-544.
-
(1998)
Nature
, vol.393
, pp. 537-544
-
-
Cole, S.T.1
Brosch, R.2
Parkhill, J.3
Garnier, T.4
Churcher, C.5
-
33
-
-
84859699831
-
The Gene Ontology: enhancements for 2011
-
The Gene Ontology: enhancements for 2011. Nucleic Acids Res 40: D559-D564.
-
Nucleic Acids Res
, vol.40
-
-
-
34
-
-
84862025162
-
Efficiency of purine utilization by Helicobacter pylori: roles for adenosine deaminase and a NupC homolog
-
Miller EF, Vaish S, Maier RJ, (2012) Efficiency of purine utilization by Helicobacter pylori: roles for adenosine deaminase and a NupC homolog. PLoS One 7: e38727.
-
(2012)
PLoS One
, vol.7
-
-
Miller, E.F.1
Vaish, S.2
Maier, R.J.3
-
35
-
-
84858077472
-
The Pfam protein families database
-
Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, et al. (2012) The Pfam protein families database. Nucleic Acids Res 40: D290-301.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Punta, M.1
Coggill, P.C.2
Eberhardt, R.Y.3
Mistry, J.4
Tate, J.5
-
36
-
-
0030441270
-
Acid, protons and Helicobacter pylori
-
Sachs G, Meyer-Rosberg K, Scott DR, Melchers K, (1996) Acid, protons and Helicobacter pylori. Yale J Biol Med 69: 301-316.
-
(1996)
Yale J Biol Med
, vol.69
, pp. 301-316
-
-
Sachs, G.1
Meyer-Rosberg, K.2
Scott, D.R.3
Melchers, K.4
-
37
-
-
0009210908
-
Regulation of Urease for Acid Habitation
-
In: Mobley HLT, Mendz GL, Hazell SL, editors, Washington (DC): ASM Press
-
Sachs G, Scott DR, Weeks DL, Rektorscheck M, Melchers K (2001) Regulation of Urease for Acid Habitation. In: Mobley HLT, Mendz GL, Hazell SL, editors. Helicobacter pylori: Physiology and Genetics. Washington (DC): ASM Press.
-
(2001)
Helicobacter pylori: Physiology and Genetics
-
-
Sachs, G.1
Scott, D.R.2
Weeks, D.L.3
Rektorscheck, M.4
Melchers, K.5
-
38
-
-
58149186488
-
The National Center for Biotechnology Information's Protein Clusters Database
-
Klimke W, Agarwala R, Badretdin A, Chetvernin S, Ciufo S, et al. (2009) The National Center for Biotechnology Information's Protein Clusters Database. Nucleic Acids Res 37: D216-223.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Klimke, W.1
Agarwala, R.2
Badretdin, A.3
Chetvernin, S.4
Ciufo, S.5
-
39
-
-
23644452487
-
Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutants
-
Thiele I, Vo TD, Price ND, Palsson BO, (2005) Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutants. J Bacteriol 187: 5818-5830.
-
(2005)
J Bacteriol
, vol.187
, pp. 5818-5830
-
-
Thiele, I.1
Vo, T.D.2
Price, N.D.3
Palsson, B.O.4
-
40
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M, (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res 40: D109-114.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
41
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
Gill SR, Pop M, Deboy RT, Eckburg PB, Turnbaugh PJ, et al. (2006) Metagenomic analysis of the human distal gut microbiome. Science 312: 1355-1359.
-
(2006)
Science
, vol.312
, pp. 1355-1359
-
-
Gill, S.R.1
Pop, M.2
Deboy, R.T.3
Eckburg, P.B.4
Turnbaugh, P.J.5
|