Mariniradius saccharolyticus gen. nov., sp. nov., a member of the family Cyclobacteriaceae isolated from marine aquaculture pond water, and emended descriptions of the genus Aquiflexum and Aquiflexum balticum

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART6, 2013, Pages 2088-2094

  Bhumika, V ^a   Srinivas, T N R ^b   Ravinder, K ^a   Anil Kumar, P ^a  

^a INSTITUTE OF MICROBIAL TECHNOLOGY   (India)

^b NATIONAL INSTITUTE OF OCEANOGRAPHY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

AMINOPHOSPHOLIPID; AMOXICILLIN; AMPICILLIN; BACITRACIN; CEFADROXIL; CEFTAZIDIME; CHLORAMPHENICOL; CHLORTETRACYCLINE; CIPROFLOXACIN; CYSTEINE; DNA; FATTY ACID; GENTAMICIN; GLYCINE; HOMARYLAMINE; KANAMYCIN; LINCOMYCIN; LIPID; NOVOBIOCIN; PENICILLIN G; PHOSPHATIDYLETHANOLAMINE; PHOSPHOLIPID; POLAR LIPID; POLYMYXIN B; QUINONE DERIVATIVE; RNA 16S; SPECTINOMYCIN; TETRACYCLINE; UNCLASSIFIED DRUG; VANCOMYCIN;

ANIMAL CELL; ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; AQUACULTURE; AQUIFLEXUM; AQUIFLEXUM BALTICUM; ARTICLE; BACTERIAL CELL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHEMOTAXONOMY; CONTROLLED STUDY; CYCLOBACTERIACEAE; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; INDIA; MARINE BACTERIUM; MARINE SPECIES; MARINIRADIUS SACCHAROLYTICUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL;

AQUIFLEXUM; AQUIFLEXUM BALTICUM; BACTERIA (MICROORGANISMS);

EID: 84878856547     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.043919-0     Document Type: Article

References (43)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Anil Kumar, P., Srinivas, T. N. R., Madhu, S., Manorama, R. & Shivaji, S. (2010a). Indibacter alkaliphilus gen. nov., sp. nov., an alkaliphilic bacterium isolated from a haloalkaline lake. Int J Syst Evol Microbiol 60, 721-726.
3. Anil Kumar, P., Srinivas, T. N. R., Pavan Kumar, P., Madhu, S. & Shivaji, S. (2010b). Nitritalea halalkaliphila gen. nov., sp. nov., an alkaliphilic bacterium of the family 'Cyclobacteriaceae', phylum Bacteroidetes. Int J Syst Evol Microbiol 60, 2320-2325.
4. Anil Kumar, P., Srinivas, T. N. R., Madhu, S., Sravan, R., Singh, S., Naqvi, S. W. A., Mayilraj, S. & Shivaji, S. (2012). Cecembia lonarensis gen. nov., sp. nov., a haloalkalitolerant bacterium of the family Cyclobacteriaceae, isolated from a haloalkaline lake and emended descriptions of the genera Indibacter, Nitritalea and Belliella. Int J Syst Evol Microbiol 62, 2252-2258.
5. Asker, D., Beppu, T. & Ueda, K. (2007). Unique diversity of carotenoid-producing bacteria isolated from Misasa, a radioactive site in Japan. Appl Microbiol Biotechnol 77, 383-392.
6. Bernardet, J. F., Nakagawa, Y. & Holmes, B. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
7. Bligh, E. G. & Dyer, W. J. (1959). A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37, 911-917.
8. Bowman, J. P., Nichols, C. M. & Gibson, J. A. E. (2003). Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov. and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats. Int J Syst Evol Microbiol 53, 1343-1355.
9. Brettar, I., Christen, R. & Höfle, M. G. (2004a). Belliella baltica gen. nov., sp. nov., a novel marine bacterium of the Cytophaga- Flavobacterium-Bacteroides group isolated from surface water of the central Baltic Sea. Int J Syst Evol Microbiol 54, 65-70.
10. Brettar, I., Christen, R. & Höfle, M. G. (2004b). Aquiflexum balticum gen. nov., sp. nov., a novel marine bacterium of the Cytophaga-- Flavobacterium-Bacteroides group isolated from surface water of the central Baltic Sea. Int J Syst Evol Microbiol 54, 2335-2341.
11. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
12. Copa-Patiño, J. L., Arenas, M., Soliveri, J., Sánchez-Porro, C. & Ventosa, A. (2008). Algoriphagus hitonicola sp. nov., isolated from an athalassohaline lagoon. Int J Syst Evol Microbiol 58, 424-428.
13. Felsenstein, J. (1989). PHYLIP (phylogenetic inference package), version 3.5.1. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA
14. Groth, I., Schumann, P., Rainey, F. A., Martin, K., Schuetze, B. & Augsten, K. (1997). Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 47, 1129-1133.
15. Guindon, S., Lethiec, F., Duroux, P. & Gascuel, O. (2005). PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 33 (Web Server issue), W557-W559.
16. Johnson, J. L. (1994). Similarity analysis of rRNAs. In Methods for General and Molecular Bacteriology, pp. 683-700. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
17. Kämpfer, P., Young, C. C., Chen, W. M., Rekha, P. D., Fallschissel, K., Lodders, N., Chou, J. H., Shen, F. T., Frischmann, A. & other authors (2010). Fontibacter flavus gen. nov., sp. nov., a member of the family 'Cyclobacteriaceae', isolated from a hot spring. Int J Syst Evol Microbiol 60, 2066-2070.
18. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
19. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
20. Lá nyí, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
21. Liu, Y., Li, H., Jiang, J. T., Liu, Y. H., Song, X. F., Xu, C. J. & Liu, Z. P. (2009). Algoriphagus aquatilis sp. nov., isolated from a freshwater lake. Int J Syst Evol Microbiol 59, 1759-1763.
22. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
23. Nedashkovskaya, O. I. & Ludwig, W. (2011). Family II. Cyclobacteriaceae fam. nov. (The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 4, p. 423. Edited by N. R. Krieg, J. T. Staley, D. R. Brown, B. P. Hedlund, B. J. Paster, N. L. Ward, W. Ludwig & W. B. Whitman. New York: Springer.
24. Nedashkovskaya, O. I., Vancanneyt, M., Van Trappen, S., Vandemeulebroecke, K., Lysenko, A. M., Rohde, M., Falsen, E., Frolova, G. M., Mikhailov, V. V. & Swings, J. (2004). Description of Algoriphagus aquimarinus sp. nov., Algoriphagus chordae sp. nov. and Algoriphagus winogradskyi sp. nov., from sea water and algae, transfer of Hongiella halophila Yi and Chun 2004 to the genus Algoriphagus as Algoriphagus halophilus comb. nov. and emended descriptions of the genera Algoriphagus Bowman et al. 2003 and Hongiella Yi and Chun 2004. Int J Syst Evol Microbiol 54, 1757-1764.
25. Nedashkovskaya, O. I., Kim, S. B., Vancanneyt, M., Lysenko, A. M., Shin, D. S., Park, M. S., Lee, K. H., Jung, W. J., Kalinovskaya, N. I. & other authors (2006). Echinicola pacifica gen. nov., sp. nov., a novel flexibacterium isolated from the sea urchin Strongylocentrotus intermedius. Int J Syst Evol Microbiol 56, 953-958.
26. Pandey, K. K., Mayilraj, S. & Chakrabarti, T. (2002). Pseudomonas indica sp. nov., a novel butane-utilizing species. Int J Syst Evol Microbiol 52, 1559-1567.
27. Raj, H. D. & Maloy, S. R. (1990). Proposal of Cyclobacterium marinus gen. nov., comb. nov., for a marine bacterium previously assigned to the genus Flectobacillus. Int J Syst Bacteriol 40, 337-347.
28. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
29. Schmidt, M., Priemé, A. & Stougaard, P. (2006). Rhodonellum psychrophilum gen. nov., sp. nov., a novel psychrophilic and alkaliphilic bacterium of the phylum Bacteroidetes isolated from Greenland. Int J Syst Evol Microbiol 56, 2887-2892.
30. Sly, L. I., Blackall, L. L., Kraat, P. C., Tao, T.-S. & Sangkhobol, V. (1986). The use of second derivative plots for the determination of mol% guanine plus cytosine of DNA by the thermal denaturation method. J Microbiol Methods 5, 139-156.
31. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
32. Srinivas, T. N. R., Anil Kumar, P., Madhu, S., Sunil, B., Sharma, T. V. R. S. & Shivaji, S. (2011). Cesiribacter andamanensis gen. nov., sp. nov., a novel bacterium isolated from a soil sample of mud volcano, Andaman Islands, India. Int J Syst Evol Microbiol 61, 1521-1527.
33. Srinivas, T. N. R., Kailash Tryambak, B. & Anil Kumar, P. (2012). Echinicola shivajiensis sp. nov., a novel bacterium of the family "Cyclobacteriaceae" isolated from brackish water pond. Antonie van Leeuwenhoek 101, 641-647.
34. Surendra, V., Bhawana, P., Suresh, K., Srinivas, T. N. R. & Anil Kumar, P. (2012). Imtechella halotolerans gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from estuarine water. Int J Syst Evol Microbiol 62, 2624-2630.
35. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
36. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
37. Tian, S. P., Wang, Y. X., Hu, B., Zhang, X. X., Xiao, W., Chen, Y., Lai, Y. H., Wen, M. L. & Cui, X. L. (2010). Litoribacter ruber gen. nov., sp. nov., an alkaliphilic, halotolerant bacterium isolated from a soda lake sediment. Int J Syst Evol Microbiol 60, 2996-3001.
38. Van Trappen, S., Vandecandelaere, I., Mergaert, J. & Swings, J. (2004). Algoriphagus antarcticus sp. nov., a novel psychrophile from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 54, 1969-1973.
39. Vandamme, P., Pot, B., Gillis, M., de Vos, P., Kersters, K. & Swings, J. (1996). Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol Rev 60, 407-438.
40. Yang, C. X., Liu, Y. P., Bao, Q. H., Feng, F. Y., Liu, H. R., Zhang, X. J. & Zhao, Y. L. (2012). Mongoliitalea lutea gen. nov., sp. nov., an alkaliphilic, halotolerant bacterium isolated from a haloalkaline lake. Int J Syst Evol Microbiol 62, 647-653.
41. Ying, J. Y., Wang, B. J., Yang, S. S. & Liu, S. J. (2006). Cyclobacterium lianum sp. nov., a marine bacterium isolated from sediment of an oilfield in the South China Sea, and emended description of the genus Cyclobacterium. Int J Syst Evol Microbiol 56, 2927-2930.
42. Yoon, J. H., Kang, S. J. & Oh, T. K. (2005). Algoriphagus locisalis sp. nov., isolated from a marine solar saltern. Int J Syst Evol Microbiol 55, 1635-1639.
43. Yoon, J. H., Lee, M. H., Kang, S. J. & Oh, T. K. (2006). Algoriphagus terrigena sp. nov., isolated fromsoil. Int J Syst EvolMicrobiol 56, 777-780.