Rhodonellum psychrophilum gen. nov., sp. nov., a novel psychrophilic and alkaliphilic bacterium of the phylum Bacteroidetes isolated from Greenland

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 12, 2006, Pages 2887-2892

  Schmidt, Mariane ^a,b,c   Priemé, Anders ^b   Stougaard, Peter ^a,c  

^a BIONEER A S   (Denmark)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

^c UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; GUANOSINE; RIBOSOME RNA; RNA 16S; UNSATURATED FATTY ACID;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; BACTEROIDETES; BELLIELLA BALTICA; CHEMOTAXONOMY; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; FLEXIBACTERACEAE; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; GREENLAND; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN CONTENT; RHODONELLUM PSYCHROPHILUM; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

ALKALIES; BACTERIAL TYPING TECHNIQUES; CALCIUM CARBONATE; COLD; DNA, BACTERIAL; DNA, RIBOSOMAL; FLEXIBACTERACEAE; FRESH WATER; GENES, RRNA; GREENLAND; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); BACTEROIDETES; BELLIELLA BALTICA; FLEXIBACTERACEAE; NEGIBACTERIA;

EID: 33845723144     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64450-0     Document Type: Article

References (26)

1. Brettar, I., Christen, R. & Höfle, M. G. (2004). Belliella baltica gen. nov., sp. nov., a novel marine bacterium of the Cytophaga-Flavobacterium-Bacteroides group isolated from surface water of the central Baltic Sea. Int J Syst Evol Microbiol 54, 65-70.
2. Buchardt, B., Seaman, P., Stockmann, G. & 9 other authors (1997). Submarine columns of ikaite tufa. Nature 390, 129-130.
3. Buchardt, B., Israelson, C., Seaman, P. & Stockmann, G. (2001). Ikaite tufa towers in Ikka Fjord, Southwest Greenland: their formation by mixing of seawater and alkaline spring water. J Sedimentary Res 71, 176-189.
4. Cashion, P., Hodler-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
5. Cottrell, M. T. & Kirchman, D. L. (2000). Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization. Appl Environ Microbiol 66, 5116-5122.
6. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
7. Dorel, C., Vidal, O., Prigent-Combaret C., Vallet I. & Lejeune, P. (1999). Involvement of the Cpx signal transduction pathway of E. coli in biofilm formation. FEMS Microbiol Lett 178, 169-175.
8. Feller, G. & Gerday, C. (2003). Psychrophilic enzymes: hot topics in cold adaptation. Nat Rev Microbiol 1, 200-208.
9. Furusawa, H. & Koyama, N. (2004). Effect of fatty acids on the membrane potential of an alkaliphilic Bacillus. Curr Microbiol 48, 196-198.
10. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
11. Hoekstra, R. F. (1996). Horizontal transmission in ftingal populations. In Fungal Genetics: Principles and Practice, pp. 337-348. Edited by C. J. Bos. Marcel Dekker, New York.
12. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
13. Krulwich, T. A., Ito, M., Gilmour, R. & Guffanti, A. A. (1997). Mechanisms of cytoplasmic pH regulation in alkaliphilic strains of Bacillus. Extremophiles 1, 163-169.
14. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. New York: Wiley.
15. Mansfeld-Giese, K, Larsen, J. & Bødker, L. (2002). Bacterial populations associated with mycelium of the arbuscular mycorrhizal fungus Glomus intraradices. FEMS Microbiol Ecol 41, 133-140.
16. Mesbah, M., Premachandran, U. & Whitman, W. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
17. Nichols, D. S., Sanderson, K., Buia, A. & 7 other authors (2002). Bioprospecting and biotechnology in Antarctica. In The Antarctic: Past, Present and Future (Antarctic CRC Research Report no. 28), pp. 85-103. Edited by J. Jabour-Green & M. Haward. Hobart, Australia.
18. O'Toole, G. A. & Kolter, R. (1998). Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, convergent signalling pathways: a genetic analysis. Mol Microbiol 28, 449-461.
19. Prigent-Combaret, C., Brombacher, E., Vidal, O., Ambert, A., Lejeune, P., Landini, P. & Dorel, C. (2001). Complex regulatory network controls initial adhesion and biofilm formation in Escherichia coli via regulation of the csgD gene. J Bacteriol 183, 7213-7223.
20. Sasser, M. (1990). Identification of bacteria through fatty acid analysis. In Methods in Phytobacteriology, pp. 199-203. Edited by Z. Klement, K. Rudolph & D. C. Sands. Budapest: Akademiai Kaido.
21. Schmidt M., Priemé, A. & Stougaard, P. (2006). High microbial diversity in permanently cold and alkaline ikaite columns from Greenland. Extremophiles (in press). doi: 10.1007/s00792-006-0529-9
22. Stockmann, G., Buchardt, B. & Kristiansen, A. (2000). The submarine 'ikaite column garden' in Ikka Fjord, SW Greenland. Northern Sci Network Newsl 26/27.
23. Stougaard, P., Jørgensen, F., Johnsen, M. G. & Hansen, O. C. (2002). Microbial diversity in ikaite tufa columns: an alkaline, cold ecological niche in Greenland. Environ Microbiol 4, 487-493.
24. Van de Peer, Y. & De Wachter, R. (1994). TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10, 569-570.
25. Van Trappen, S., Vandecandelaere, I., Mergaert, J. & Swings, J. (2004). Algoriphagus antarcticus sp. nov., a novel psychrophile from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 54, 1969-1973.
26. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.