-
1
-
-
70449103609
-
An oestrogen-receptor-a-bound human chromatin interactome
-
Fulwood, M.J., Liu, M.H., Pan, Y.F., Liu, J., Xu, H., Mohamed, Y.B., Orlov, Y.L., Velkov, S., Ho, A., Mei, P.H. et al. (2009) An oestrogen-receptor- a-bound human chromatin interactome. Nature, 465, 58-64.
-
(2009)
Nature
, vol.465
, pp. 58-64
-
-
Fulwood, M.J.1
Liu, M.H.2
Pan, Y.F.3
Liu, J.4
Xu, H.5
Mohamed, Y.B.6
Orlov, Y.L.7
Velkov, S.8
Ho, A.9
Mei, P.H.10
-
2
-
-
4944255743
-
Post-translational modification of p53 in tumorigenesis
-
Bode, A.M. and Dong, Z. (2004) Post-translational modification of p53 in tumorigenesis. Nat. Rev. Cancer, 4, 793-805.
-
(2004)
Nat. Rev. Cancer
, vol.4
, pp. 793-805
-
-
Bode, A.M.1
Dong, Z.2
-
3
-
-
42449114966
-
Transcriptional control of human p53-regulated genes
-
Riley, T., Sontag, E., Chen, P. and Levine, A. (2008) Transcriptional control of human p53-regulated genes. Nat. Rev. Mol. Cell Biol., 9, 402-412.
-
(2008)
Nat. Rev. Mol. Cell Biol.
, vol.9
, pp. 402-412
-
-
Riley, T.1
Sontag, E.2
Chen, P.3
Levine, A.4
-
4
-
-
0026577060
-
Mammalian p53 can function as a transcription factor in yeast
-
Schä rer, E. and Iggo, R. (1992) Mammalian p53 can function as a transcription factor in yeast. Nucleic Acids Res., 20, 1539-1545.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 1539-1545
-
-
Schärer, E.1
Iggo, R.2
-
5
-
-
0034671945
-
Oncogenic mutations of the p53 tumor suppressor: The demons of the guardian of the genome
-
Sigal, A. and Rotter, V. (2000) Oncogenic mutations of the p53 tumor suppressor: the demons of the guardian of the genome. Cancer Res., 60, 6788-6793.
-
(2000)
Cancer Res.
, vol.60
, pp. 6788-6793
-
-
Sigal, A.1
Rotter, V.2
-
6
-
-
65349103899
-
Blinded by the light: The growing complexity of p53
-
Vousden, K.H. and Prives, C. (2009) Blinded by the light: the growing complexity of p53. Cell, 137, 413-431.
-
(2009)
Cell
, vol.137
, pp. 413-431
-
-
Vousden, K.H.1
Prives, C.2
-
7
-
-
0026849821
-
Definition of a consensus binding site for p53
-
El-Deiry, W.S., Kern, S.E., Pietenpol, J.A., Kinzler, K.W. and Vogelstein, B. (1992) Definition of a consensus binding site for p53. Nat. Genet., 1, 45-49.
-
(1992)
Nat. Genet.
, vol.1
, pp. 45-49
-
-
El-Deiry, W.S.1
Kern, S.E.2
Pietenpol, J.A.3
Kinzler, K.W.4
Vogelstein, B.5
-
8
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey, T.L. and Elkan, C. (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol., 2, 28-36.
-
(1994)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
9
-
-
14944363825
-
NestedMICA: Sensitive inference of over-represented motifs in nucleic acid sequence
-
Down, T.A. and Hubbard, T.J. (2005) NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence. Nucleic Acids Res., 33, 1445-1453.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 1445-1453
-
-
Down, T.A.1
Hubbard, T.J.2
-
10
-
-
0032826179
-
Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
-
Hertz, G.Z. and Stormo, G.D. (1999) Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics, 15, 563-577.
-
(1999)
Bioinformatics
, vol.15
, pp. 563-577
-
-
Hertz, G.Z.1
Stormo, G.D.2
-
11
-
-
0035228215
-
BioProspector: Discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes
-
Liu, X., Brutlag, D.L. and Liu, J.S. (2001) BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. Pac. Symp. Biocomput., 6, 127-138.
-
(2001)
Pac. Symp. Biocomput.
, vol.6
, pp. 127-138
-
-
Liu, X.1
Brutlag, D.L.2
Liu, J.S.3
-
12
-
-
0036324753
-
An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments
-
Liu, X.S., Brutlag, D.L. and Liu, J.S. (2002) An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments. Nat. Biotechnol., 20, 835-839.
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 835-839
-
-
Liu, X.S.1
Brutlag, D.L.2
Liu, J.S.3
-
13
-
-
33845359995
-
MUSA: A parameter free algorithm for the identification of biologically significant motifs
-
Mendes, N.D., Casimirov, A.C., Santos, P.M., Sá-Correia, I., Oliveira, A.L. and Freitas, A.T. (2006) MUSA: a parameter free algorithm for the identification of biologically significant motifs. Bioinformatics, 22, 2996-3002.
-
(2006)
Bioinformatics
, vol.22
, pp. 2996-3002
-
-
Mendes, N.D.1
Casimirov, A.C.2
Santos, P.M.3
Sá-Correia, I.4
Oliveira, A.L.5
Freitas, A.T.6
-
14
-
-
0031787969
-
Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
-
Roth, F.P., Hughes, J.D., Estep, P.W. and Church, G.M. (1998) Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nat. Biotechnol., 16, 939-945.
-
(1998)
Nat. Biotechnol.
, vol.16
, pp. 939-945
-
-
Roth, F.P.1
Hughes, J.D.2
Estep, P.W.3
Church, G.M.4
-
15
-
-
13444273342
-
Identifying tissue-selective transcription factor binding sites in vertebrate promoters
-
Smith, A.D., Sumazin, P. and Zhang, M.Q. (2005) Identifying tissue-selective transcription factor binding sites in vertebrate promoters. Proc. Natl Acad. Sci. USA, 102, 1560-1565.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 1560-1565
-
-
Smith, A.D.1
Sumazin, P.2
Zhang, M.Q.3
-
16
-
-
0036137323
-
A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling
-
Thijs, G., Lescot, M., Marchal, K., Rombauts, S., De Moor, B., Rouzé , P. and Moreau, Y. (2001) A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling. Bioinformatics, 17, 1113-1122.
-
(2001)
Bioinformatics
, vol.17
, pp. 1113-1122
-
-
Thijs, G.1
Lescot, M.2
Marchal, K.3
Rombauts, S.4
De Moor, B.5
Rouzé, P.6
Moreau, Y.7
-
17
-
-
24744462704
-
Mining p53 binding sites using profile hidden Markov model
-
Selvaraj, H. and Srimani, P.K. (eds) IEEE Computer Society, Los Alamitos, California
-
Huang, J. and Li, S. (2005) Mining p53 binding sites using profile hidden Markov model. In: Selvaraj, H. and Srimani, P.K. (eds), In: Proceedings of the International Conference on Information Technology: Coding and Computing (ITCC'05), Vol.1 IEEE Computer Society, Los Alamitos, California. pp. 146-151.
-
(2005)
Proceedings of the International Conference on Information Technology: Coding and Computing (ITCC'05)
, vol.1
, pp. 146-151
-
-
Huang, J.1
Li, S.2
-
18
-
-
78650980964
-
A novel HMM-based method for detecting enriched transcription factor binding sites reveals RUNX3 as a potential target in pancreatic cancer biology
-
Levkovitz, L., Yosef, N., Gershengorn, M.C., Ruppin, E., Sharan, R. and Oron, Y. (2010) A novel HMM-based method for detecting enriched transcription factor binding sites reveals RUNX3 as a potential target in pancreatic cancer biology. PLoS One, 5, e14423.
-
(2010)
PLoS One
, vol.5
-
-
Levkovitz, L.1
Yosef, N.2
Gershengorn, M.C.3
Ruppin, E.4
Sharan, R.5
Oron, Y.6
-
19
-
-
66149173548
-
The p53HMM algorithm: Using profile hidden markov models to detect p53-responsive genes
-
Riley, T., Yu, X., Sontag, E. and Levine, A. (2009) The p53HMM algorithm: using profile hidden markov models to detect p53-responsive genes. BMC Bioinformatics, 10, 111.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 111
-
-
Riley, T.1
Yu, X.2
Sontag, E.3
Levine, A.4
-
20
-
-
36448978247
-
OSCAR: One-class SVM for accurate recognition of cis-elements
-
Jiang, B., Zhang, M.Q. and Zhang, X. (2007) OSCAR: one-class SVM for accurate recognition of cis-elements. Bioinformatics, 23, 2823-2828.
-
(2007)
Bioinformatics
, vol.23
, pp. 2823-2828
-
-
Jiang, B.1
Zhang, M.Q.2
Zhang, X.3
-
21
-
-
47349114777
-
Identifying functional binding motifs of tumor protein p53 using support vector machines
-
Wani, M.A., Kantardzic, M.M., Li, T., Liu, Y., Kurgan, L., Ye, J. et al. (eds) IEEE Computer Society, Los Alamitos
-
Sinha, A.U., Phatak, M., Bhatnagar, R. and Jegga, A.G. (2007) Identifying functional binding motifs of tumor protein p53 using support vector machines. In: Wani, M.A., Kantardzic, M.M., Li, T., Liu, Y., Kurgan, L., Ye, J. et al. (eds), In: Proceedings of the Sixth International Conference on Machine Learning and Applications (ICMLA'07). IEEE Computer Society, Los Alamitos, pp. 506-511.
-
(2007)
Proceedings of the Sixth International Conference on Machine Learning and Applications (ICMLA'07)
, pp. 506-511
-
-
Sinha, A.U.1
Phatak, M.2
Bhatnagar, R.3
Jegga, A.G.4
-
22
-
-
77950652940
-
Integrating multiple evidence sources to predict transcription factor binding in the human genome
-
Ernst, J., Plasterer, H.L., Simon, I. and Bar-Joseph, Z. (2010) Integrating multiple evidence sources to predict transcription factor binding in the human genome. Genome Res., 20, 526-536.
-
(2010)
Genome Res.
, vol.20
, pp. 526-536
-
-
Ernst, J.1
Plasterer, H.L.2
Simon, I.3
Bar-Joseph, Z.4
-
23
-
-
77349120278
-
Genome-wide prediction of transcription factor binding sites using an integrated model
-
Won, K.J., Ren, B. and Wang, W. (2010) Genome-wide prediction of transcription factor binding sites using an integrated model. Genome Biol., 11, R7.
-
(2010)
Genome Biol.
, vol.11
-
-
Won, K.J.1
Ren, B.2
Wang, W.3
-
24
-
-
2942612843
-
Ordered cooperative functions of PRMT1, p300, and CARM1 in transcriptional activation by p53
-
An, W., Kim, J. and Roeder, R.G. (2004) Ordered cooperative functions of PRMT1, p300, and CARM1 in transcriptional activation by p53. Cell, 117, 735-748.
-
(2004)
Cell
, vol.117
, pp. 735-748
-
-
An, W.1
Kim, J.2
Roeder, R.G.3
-
25
-
-
0035883954
-
Transcription regulation by histone methylation: Interplay between different covalent modifications of the core histone tails
-
Zhang, Y. and Reinberg, D. (2001) Transcription regulation by histone methylation: interplay between different covalent modifications of the core histone tails. Genes Dev., 15, 2343-2360.
-
(2001)
Genes Dev.
, vol.15
, pp. 2343-2360
-
-
Zhang, Y.1
Reinberg, D.2
-
26
-
-
2942543339
-
P53-mediated transcriptional activation: From test tube to cell
-
Fingerman, I.M. and Briggs, S.D. (2004) p53-mediated transcriptional activation: from test tube to cell. Cell, 117, 690-691.
-
(2004)
Cell
, vol.117
, pp. 690-691
-
-
Fingerman, I.M.1
Briggs, S.D.2
-
27
-
-
46349094389
-
Characterization of genome-wide p53-binding sites upon stress response
-
Smeenk, L., van Heeringen, S.J., Koeppel, M., van Driel, M.A., Bartels, S.J., Akkers, R.C., Denissov, S., Stunnenberg, H.G. and Lohrum, M. (2008) Characterization of genome-wide p53-binding sites upon stress response. Nucleic Acids Res., 36, 3639-3654.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 3639-3654
-
-
Smeenk, L.1
Van Heeringen, S.J.2
Koeppel, M.3
Van Driel, M.A.4
Bartels, S.J.5
Akkers, R.C.6
Denissov, S.7
Stunnenberg, H.G.8
Lohrum, M.9
-
28
-
-
30344478870
-
A global map of p53 transcription-factor binding sites in the human genome
-
Wei, C.L., Wu, Q., Vega, V.B., Chiu, K.P., Ng, P., Zhang, T., Shahab, A., Yong, H.C., Fu, Y., Weng, Z. et al. (2006) A global map of p53 transcription-factor binding sites in the human genome. Cell, 124, 207-219.
-
(2006)
Cell
, vol.124
, pp. 207-219
-
-
Wei, C.L.1
Wu, Q.2
Vega, V.B.3
Chiu, K.P.4
Ng, P.5
Zhang, T.6
Shahab, A.7
Yong, H.C.8
Fu, Y.9
Weng, Z.10
-
29
-
-
34547620563
-
Divergent evolution of human p53 binding sites: Cell cycle versus apoptosis
-
Horvath, M.M., Wang, X., Resnick, M.A. and Bell, D.A. (2007) Divergent evolution of human p53 binding sites: cell cycle versus apoptosis. PLoS Genet., 3, e127.
-
(2007)
PLoS Genet.
, vol.3
-
-
Horvath, M.M.1
Wang, X.2
Resnick, M.A.3
Bell, D.A.4
-
30
-
-
78651320424
-
The UCSC Genome Browser database: Update 2011
-
Fujita, P.A., Rhead, B., Zweig, A.S., Hinrichs, A.S., Karolchik, D., Cline, M.S., Goldman, M., Barber, G.P., Clawson, H., Coelho, A. et al. (2011) The UCSC Genome Browser database: update 2011. Nucleic Acids Res., 39, D876-D882.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Fujita, P.A.1
Rhead, B.2
Zweig, A.S.3
Hinrichs, A.S.4
Karolchik, D.5
Cline, M.S.6
Goldman, M.7
Barber, G.P.8
Clawson, H.9
Coelho, A.10
-
31
-
-
0036079158
-
The human genome browser at UCSC
-
Kent, W.J., Sugnet, C.W., Furey, T.S., Roskin, K.M., Pringle, T.H., Zahler, A.M. and Haussler, D. (2002) The human genome browser at UCSC. Genome Res., 12, 996-1006.
-
(2002)
Genome Res.
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
Haussler, D.7
-
32
-
-
0030801002
-
Gapped BLAST and PSIBLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schä ffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
33
-
-
84858221706
-
Ensembl 2012
-
Flicek, P., Amode, M.R., Barrell, D., Beal, K., Brent, S., Carvalho-Silva, D., Clapham, P., Coates, G., Fairley, S., Fitzgerald, S. et al. (2012) Ensembl 2012. Nucleic Acids Res., 40, D84-D90.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Brent, S.5
Carvalho-Silva, D.6
Clapham, P.7
Coates, G.8
Fairley, S.9
Fitzgerald, S.10
-
34
-
-
79953300078
-
FIMO: Scanning for occurrences of a given motif
-
Grant, C.E., Bailey, T.L. and Noble, W.S. (2011) FIMO: scanning for occurrences of a given motif. Bioinformatics, 27, 1017-1018.
-
(2011)
Bioinformatics
, vol.27
, pp. 1017-1018
-
-
Grant, C.E.1
Bailey, T.L.2
Noble, W.S.3
-
35
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
Bailey, T.L., Boden, M., Buske, F.A., Frith, M., Grant, C.E., Clementi, L., Ren, J., Li, W.W. and Noble, W.S. (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res., 37, W202-W208.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Noble, W.S.9
-
36
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
Heintzman, N.D., Stuart, R.K., Hon, G., Fu, Y., Ching, C.W., Hawkins, R.D., Barrera, L.O., Van Calcar, S., Qu, C., Ching, K.A. et al. (2007) Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat. Genet., 39, 311-318.
-
(2007)
Nat. Genet.
, vol.39
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
Van Calcar, S.8
Qu, C.9
Ching, K.A.10
-
37
-
-
0002178053
-
Bias reduction of maximum likelihood estimates
-
Firth, D. (1993) Bias reduction of maximum likelihood estimates. Biometrika, 80, 27-38.
-
(1993)
Biometrika
, vol.80
, pp. 27-38
-
-
Firth, D.1
-
38
-
-
0037199788
-
A solution to the problem of separation in logistic regression
-
Heinze, G. and Schemper, M. (2002) A solution to the problem of separation in logistic regression. Stat. Med., 21, 2409-2419.
-
(2002)
Stat. Med.
, vol.21
, pp. 2409-2419
-
-
Heinze, G.1
Schemper, M.2
-
39
-
-
79951480123
-
-
R Foundation for Statistical Computing, Vienna, Austria
-
R Development Core Team. (2010) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
-
(2010)
R: A Language and Environment for Statistical Computing
-
-
-
40
-
-
84874253819
-
Gene Ontology annotations and resources
-
The Gene Ontology Consortium
-
The Gene Ontology Consortium. (2013) Gene Ontology annotations and resources. Nucleic Acids Res., 41, D530-D535.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
-
41
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. and Tanabe, M. (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res., 40, D109-D114.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
42
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
Huang, D.W., Sherman, B.T. and Lempicki, R.A. (2009) Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res., 37, 1-13.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1-13
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
43
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang, D.W., Sherman, B.T. and Lempicki, R.A. (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc., 4, 44-57.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
44
-
-
84862905519
-
ATM and MET kinases are synthetic lethal with nongenotoxic activation of p53
-
Sullivan, K.D., Padilla-Just, N., Henry, R.E., Porter, C.C., Kim, J., Tentler, J.J., Eckhardt, S.G., Tan, A.C., DeGregori, J. and Espinosa, J.M. (2012) ATM and MET kinases are synthetic lethal with nongenotoxic activation of p53. Nat. Chem. Biol., 8, 646-654.
-
(2012)
Nat. Chem. Biol.
, vol.8
, pp. 646-654
-
-
Sullivan, K.D.1
Padilla-Just, N.2
Henry, R.E.3
Porter, C.C.4
Kim, J.5
Tentler, J.J.6
Eckhardt, S.G.7
Tan, A.C.8
Degregori, J.9
Espinosa, J.M.10
-
45
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Article3
-
Smyth, G.K. (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol., 3, Article3.
-
(2004)
Stat. Appl. Genet. Mol. Biol.
, vol.3
-
-
Smyth, G.K.1
-
47
-
-
77950484709
-
Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs
-
Kitayner, M., Rozenberg, H., Rohs, R., Suad, O., Rabinovich, D., Honig, B. and Shakked, Z. (2010) Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs. Nat. Struct. Mol. Biol., 17, 423-429.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 423-429
-
-
Kitayner, M.1
Rozenberg, H.2
Rohs, R.3
Suad, O.4
Rabinovich, D.5
Honig, B.6
Shakked, Z.7
-
48
-
-
0028943706
-
Interaction of p53 with its consensus DNA-binding site
-
Wang, Y., Schwedes, J.F., Parks, D., Mann, K. and Tegtmeyer, P. (1995) Interaction of p53 with its consensus DNA-binding site. Mol. Cell. Biol., 15, 2157-2165.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 2157-2165
-
-
Wang, Y.1
Schwedes, J.F.2
Parks, D.3
Mann, K.4
Tegtmeyer, P.5
-
49
-
-
84871748845
-
MuMoD: A Bayesian approach to detect multiple modes of protein-DNA binding from genome-wide ChIP data
-
Narlikar, L. (2013) MuMoD: a Bayesian approach to detect multiple modes of protein-DNA binding from genome-wide ChIP data. Nucleic Acids Res., 41, 21-32.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 21-32
-
-
Narlikar, L.1
-
50
-
-
84867444899
-
ENCODE: The human encyclopaedia
-
Mahler, B. (2012) ENCODE: The human encyclopaedia. Nature, 489, 46-48.
-
(2012)
Nature
, vol.489
, pp. 46-48
-
-
Mahler, B.1
-
51
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton, M.P., Cheng, A.W., Welstead, G.G., Kooistra, T., Carey, B.W., Steine, E.J., Hanna, J., Lodato, M.A., Frampton, G.M., Sharp, P.A. et al. (2010) Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl Acad. Sci. USA, 107, 21931-21936.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
-
52
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
Heintzman, N.D., Hon, G.C., Hawkins, R.D., Kheradpour, P., Stark, A., Harp, L.F., Ye, Z., Lee, L.K., Stuart, R.K., Ching, C.W. et al. (2009) Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature, 459, 108-112.
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
Harp, L.F.6
Ye, Z.7
Lee, L.K.8
Stuart, R.K.9
Ching, C.W.10
-
53
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
Rada-Iglesias, A., Bajpai, R., Swigut, T., Brugmann, S.A., Flynn, R.A. and Wysocka, J. (2011) A unique chromatin signature uncovers early developmental enhancers in humans. Nature, 470, 279-283.
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
54
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Shen, Y., Yue, F., McCleary, D.F., Ye, Z., Edsall, L., Kuan, S., Wagner, U., Dixon, J., Lee, L., Lobanenkov, V.V. et al. (2012) A map of the cis-regulatory sequences in the mouse genome. Nature, 488, 116-120.
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
Yue, F.2
McCleary, D.F.3
Ye, Z.4
Edsall, L.5
Kuan, S.6
Wagner, U.7
Dixon, J.8
Lee, L.9
Lobanenkov, V.V.10
-
55
-
-
0027359827
-
WAF1, a potential mediator of p53 tumor suppression
-
El-Deiry, W.S., Tokino, T., Velculescu, V.E., Levy, D.B., Parsons, R., Trent, J.M., Lin, D., Mercer, W.E., Kinzler, K.W. and Vogelstein, B. (1993) WAF1, a potential mediator of p53 tumor suppression. Cell, 75, 817-825.
-
(1993)
Cell
, vol.75
, pp. 817-825
-
-
El-Deiry, W.S.1
Tokino, T.2
Velculescu, V.E.3
Levy, D.B.4
Parsons, R.5
Trent, J.M.6
Lin, D.7
Mercer, W.E.8
Kinzler, K.W.9
Vogelstein, B.10
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