-
1
-
-
0347125328
-
JASPAR: An open-access database for eukaryotic transcription factor binding profiles
-
A. Sandelin, W. Alkema, P. Engstrom, et al., "JASPAR: an open-access database for eukaryotic transcription factor binding profiles," Nucleic Acids Res., 32, D91-94, 2004.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Sandelin, A.1
Alkema, W.2
Engstrom, P.3
-
2
-
-
0033978588
-
Object-oriented Transcription Factors Database (ooTFD)
-
D. Ghosh, "Object-oriented Transcription Factors Database (ooTFD)," Nucleic Acids Res., 28, 308-10, 2000.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 308-310
-
-
Ghosh, D.1
-
3
-
-
0037208166
-
TRANSFAC: Transcriptional regulation, from patterns to profiles
-
V. Marys, E. Fricke, R. Geffers, et al., "TRANSFAC: transcriptional regulation, from patterns to profiles," Nucleic Acids Res., 31, 374-378, 2003.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 374-378
-
-
Marys, V.1
Fricke, E.2
Geffers, R.3
-
4
-
-
21444443478
-
MatInspector and beyond: Promoter analysis based on transcription factor binding sites
-
K. Cartharius, K. Freeh, K. Grote, et al., "MatInspector and beyond: promoter analysis based on transcription factor binding sites," Bioinformatics, 21, 2933-42, 2005.
-
(2005)
Bioinformatics
, vol.21
, pp. 2933-2942
-
-
Cartharius, K.1
Freeh, K.2
Grote, K.3
-
5
-
-
0034072450
-
DNA binding sites: Representation and discovery
-
G.D. Stormo, "DNA binding sites: representation and discovery," Bioinformatics, 16, 16-23, 2000.
-
(2000)
Bioinformatics
, vol.16
, pp. 16-23
-
-
Stormo, G.D.1
-
6
-
-
34047234690
-
Characterization and Identification of MicroRNA Core Promoters in Four Model Species
-
X. Zhou, J. Ruan, G. Wang, et al., "Characterization and Identification of MicroRNA Core Promoters in Four Model Species," PLoS Comput. Biol, 3, e37, 2007.
-
(2007)
PLoS Comput. Biol
, vol.3
-
-
Zhou, X.1
Ruan, J.2
Wang, G.3
-
7
-
-
34547620563
-
Divergent Evolution of Human p53 Binding Sites: Cell Cycle Versus Apoptosis
-
M.M. Horvath, X. Wang, M.A. Resnick, D.A. Bell, "Divergent Evolution of Human p53 Binding Sites: Cell Cycle Versus Apoptosis," PLoS Genetics, 3, e127, 2007.
-
(2007)
PLoS Genetics
, vol.3
-
-
Horvath, M.M.1
Wang, X.2
Resnick, M.A.3
Bell, D.A.4
-
8
-
-
2142738304
-
WebLogo: A sequence logo generator
-
G.E. Crooks, G. Hon, J.M. Chandonia, and S.E. Brenner, "WebLogo: A sequence logo generator," Genome Research, 14, 1188-90, 2004.
-
(2004)
Genome Research
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
9
-
-
27644547419
-
Chromatin Immunoprecipitation-Based Screen To Identify Functional Genomic Binding Sites for Sequence-Specific Transactivators
-
J.M. Hearnes, D.J. Mays, K.L. Schavolt, et al., "Chromatin Immunoprecipitation-Based Screen To Identify Functional Genomic Binding Sites for Sequence-Specific Transactivators," Mol. and Cell. Biol., 25, 10148-10158, 2005.
-
(2005)
Mol. and Cell. Biol
, vol.25
, pp. 10148-10158
-
-
Hearnes, J.M.1
Mays, D.J.2
Schavolt, K.L.3
-
10
-
-
0036079158
-
The Human Genome Browser at UCSC
-
W.J. Kent, C.W. Sugnet, T.S. Furey, et al., "The Human Genome Browser at UCSC," Genome Res., 12, 996-1006 2002.
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
-
11
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
AAAI Press, Menlo Park, California
-
T.L. Bailey, C. Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers," in Proceedings of the 2nd International Conference on Intelligent Systems for Molecular Biology, 1994, 28-36, AAAI Press, Menlo Park, California.
-
(1994)
Proceedings of the 2nd International Conference on Intelligent Systems for Molecular Biology
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
12
-
-
0032826179
-
Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
-
G.Z. Hertz, G.D. Stormo, "Identifying DNA and protein patterns with statistically significant alignments of multiple sequences," Bioinformatics, 15, 563-577, 1999.
-
(1999)
Bioinformatics
, vol.15
, pp. 563-577
-
-
Hertz, G.Z.1
Stormo, G.D.2
-
13
-
-
21144439147
-
Assessing computational tools for the discovery of transcriptional factor binding sites
-
M. Tompa, et al., "Assessing computational tools for the discovery of transcriptional factor binding sites," Nature Biotechnology, 23, 137-144, 2005.
-
(2005)
Nature Biotechnology
, vol.23
, pp. 137-144
-
-
Tompa, M.1
-
14
-
-
84885994592
-
Efficient and Scalable Motif Discovery using Graph-based Search
-
1-5 April, Honolulu, Hawaii
-
A.U. Sinha, R. Bhatnagar, "Efficient and Scalable Motif Discovery using Graph-based Search," in Proceedings of IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 1-5 April 2007, Honolulu, Hawaii.
-
(2007)
Proceedings of IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology
-
-
Sinha, A.U.1
Bhatnagar, R.2
-
15
-
-
0035224579
-
An algorithm for finding signals of unknown length in DNA sequences
-
G. Pavesi, G. Mauri, G. Pesole, "An algorithm for finding signals of unknown length in DNA sequences," Bioinformatics, 17 Suppl., S207-214, 2001.
-
(2001)
Bioinformatics
, vol.17
, Issue.SUPPL.
-
-
Pavesi, G.1
Mauri, G.2
Pesole, G.3
-
17
-
-
0016772212
-
Comparison of predicted and observed secondary structure of T4 ohage lysozyme
-
B.W. Matthews, "Comparison of predicted and observed secondary structure of T4 ohage lysozyme," Biochim Biophys Acta, 405, 442-51, 1975.
-
(1975)
Biochim Biophys Acta
, vol.405
, pp. 442-451
-
-
Matthews, B.W.1
-
18
-
-
3042591332
-
Stabilization of p53 is a novel mechanism for proapoptotic function of NF-kappaB
-
S. Fujioka, C. Schmidt, G.M. Sclabas, et al., "Stabilization of p53 is a novel mechanism for proapoptotic function of NF-kappaB," J Biol Chem., 279, 27549-59, 2004.
-
(2004)
J Biol Chem
, vol.279
, pp. 27549-27559
-
-
Fujioka, S.1
Schmidt, C.2
Sclabas, G.M.3
-
19
-
-
34548008615
-
Proenkephalin assists stress-activated apoptosis through transcriptional repression of NF-kappaB- and p53-regulated gene targets
-
in press
-
N. McTavish, L.A. Copeland, M.K. Saville, et al., "Proenkephalin assists stress-activated apoptosis through transcriptional repression of NF-kappaB- and p53-regulated gene targets," Cell Death Differ., in press, 2007.
-
(2007)
Cell Death Differ
-
-
McTavish, N.1
Copeland, L.A.2
Saville, M.K.3
-
20
-
-
33746819118
-
Specificity protein 1-dependent p53-mediated suppression of human manganese superoxide dismutase gene expression
-
S.K. Dhar, Y. Xu, Y. Chen, et al, "Specificity protein 1-dependent p53-mediated suppression of human manganese superoxide dismutase gene expression," J Biol. Chem., 281, 21698-709, 2006.
-
(2006)
J Biol. Chem
, vol.281
, pp. 21698-21709
-
-
Dhar, S.K.1
Xu, Y.2
Chen, Y.3
-
21
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
ENCODE Project Consortium
-
ENCODE Project Consortium, "Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project," Nature, 447, 799-816, 2007.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
|