메뉴 건너뛰기




Volumn 33, Issue 5, 2005, Pages 1445-1453

NestedMICA: Sensitive inference of over-represented motifs in nucleic acid sequence

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEIC ACID; TRANSCRIPTION FACTOR; MYOGENIC FACTOR;

EID: 14944363825     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gki282     Document Type: Article
Times cited : (99)

References (25)
  • 1
    • 0020480251 scopus 로고
    • Use of the 'perceptron' algorithm to distinguish translational initiation sites in E.coli
    • Stormo,G.D., Schneider,T.D., Gold,L. and Ehrenfeucht,A. (1982) Use of the 'perceptron' algorithm to distinguish translational initiation sites in [i#E.coli. Nucleic Acids Res.#1i], [b#10#1b], 2997-3011.
    • (1982) Nucleic Acids Res. , vol.10 , pp. 2997-3011
    • Stormo, G.D.1    Schneider, T.D.2    Gold, L.3    Ehrenfeucht, A.4
  • 2
    • 0025278259 scopus 로고
    • Weight matrix descriptions of four eukaryotic RNA polymerase ii promoter elements derived from 502 unrelated promoter sequences
    • Bucher,P. (1990) Weight matrix descriptions of four eukaryotic RNA polymerase ii promoter elements derived from 502 unrelated promoter sequences. [i#J. Mol. Biol.#1i], [b#212#1b], 563-578.
    • (1990) J. Mol. Biol. , vol.212 , pp. 563-578
    • Bucher, P.1
  • 3
    • 0033677426 scopus 로고    scopus 로고
    • Algorithms for extracting structured motifs using a suffix tree with an application to promoter and regulatory site consensus identification
    • Marsan,L. and Sagot,M.F. (2000) Algorithms for extracting structured motifs using a suffix tree with an application to promoter and regulatory site consensus identification. [i#J. Comput. Biol.#1i], [b#7#1b] 345-362.
    • (2000) J. Comput. Biol. , vol.7 , pp. 345-362
    • Marsan, L.1    Sagot, M.F.2
  • 6
    • 0025008168 scopus 로고
    • Sequence logos: A new way to display consensus sequence
    • Schneider,T.D. and Stephens,R.M. (1990) Sequence logos: A new way to display consensus sequence. [i#Nucleic Acids Res.#1i], [b#18#1b], 6097-6100.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 9
    • 0043123063 scopus 로고    scopus 로고
    • Gibbs Recursive Sampler: Finding transcription factor binding sites
    • Thompson,W., Rouchka,E. and Lawrence,C. (2003) Gibbs Recursive Sampler: finding transcription factor binding sites. [i#Nucleic Acids Res.#1i], [b#31#1b], 3580-3585.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3580-3585
    • Thompson, W.1    Rouchka, E.2    Lawrence, C.3
  • 10
    • 0030986188 scopus 로고    scopus 로고
    • The hardwiring of development: Organization and function of genomic regulatory systems
    • Arnone,M.I. and Davidson,E.H. (1997) The hardwiring of development: organization and function of genomic regulatory systems. [i#Development#1i] [b#124#1b], 1851-1864.
    • (1997) Development , vol.124 , pp. 1851-1864
    • Arnone, M.I.1    Davidson, E.H.2
  • 11
    • 0028416938 scopus 로고
    • Independent component analysis: A new concept?
    • Comon,P. (1994) Independent component analysis: A new concept? [i#Signal Processing#1i], [b#36#1b], 287-314.
    • (1994) Signal Processing , vol.36 , pp. 287-314
    • Comon, P.1
  • 12
    • 0003994516 scopus 로고    scopus 로고
    • Ensemble Learning for Independent Component Analysis
    • PhD Thesis, Astrophysics Group, Cavendish Laboratory, University of Cambridge, Cambridge, UK
    • Miskin,J. (2000) Ensemble Learning for Independent Component Analysis PhD Thesis, Astrophysics Group, Cavendish Laboratory, University of Cambridge, Cambridge, UK.
    • (2000)
    • Miskin, J.1
  • 14
    • 0026502711 scopus 로고
    • Over- and under-representation of short oligonucleotides in DNA sequences
    • Burge,C., Campbell,A.M. and Karlin,S. (1992) Over- and under-representation of short oligonucleotides in DNA sequences. [i#Proc. Natl Acad. Sci. USA#1i], [b#89#1b], 1358-1362.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 1358-1362
    • Burge, C.1    Campbell, A.M.2    Karlin, S.3
  • 15
    • 0036137323 scopus 로고    scopus 로고
    • A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling
    • Thijs,G., Lescot,M., Marchal,K., Rombauts,S., De Moor,B., Rouze,P. and Moreau,Y. (2001) A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling. [i#Bioinformatics#1i], [b#17#1b], 1113-1122.
    • (2001) Bioinformatics , vol.17 , pp. 1113-1122
    • Thijs, G.1    Lescot, M.2    Marchal, K.3    Rombauts, S.4    De Moor, B.5    Rouze, P.6    Moreau, Y.7
  • 18
    • 0347125328 scopus 로고    scopus 로고
    • JASPAR: An open-access database for eukaryotic transcription factor binding profiles
    • Sandelin,A., Alkema,W., Engstrm,P., Wasserman,W.W. and Lenhard,B. (2004) JASPAR: An open-access database for eukaryotic transcription factor binding profiles. [i#Nucleic Acids Res.#1i], [b#32#1b], D91-D94.
    • (2004) Nucleic Acids Res. , vol.32
    • Sandelin, A.1    Alkema, W.2    Engstrm, P.3    Wasserman, W.W.4    Lenhard, B.5
  • 19
    • 0032562789 scopus 로고    scopus 로고
    • Identification of regulatory regions which confer muscle-specific gene expression
    • Wasserman,W.W. and Fickett,J.W. (1998) Identification of regulatory regions which confer muscle-specific gene expression. [i#J. Mol. Biol.#1i] [b#278#1b], 167-181.
    • (1998) J. Mol. Biol. , vol.278 , pp. 167-181
    • Wasserman, W.W.1    Fickett, J.W.2
  • 20
    • 0037109192 scopus 로고    scopus 로고
    • Additivity in protein-DNA interactions: How good an approximation is it?
    • Benos,P.V., Bulyk,M.L. and Stormo,G.D. (2002) Additivity in protein-DNA interactions: How good an approximation is it? [i#Nucleic Acids Res.#1i], [b#30#1b], 4442-4451.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 4442-4451
    • Benos, P.V.1    Bulyk, M.L.2    Stormo, G.D.3
  • 22
    • 3242884167 scopus 로고    scopus 로고
    • Weeder Web: Discovery of transcription factor binding sites in a set of sequences from co-regulated genes
    • Bavesi,G., Mereghetti,P., Mauri,G. and Pesole,G. (2004) Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes. [i#Nucleic Acids Res.#1i], [b#32#1b], W199-W203.
    • (2004) Nucleic Acids Res. , vol.32
    • Bavesi, G.1    Mereghetti, P.2    Mauri, G.3    Pesole, G.4
  • 23
    • 17444402501 scopus 로고    scopus 로고
    • Drosophila DNase I footprint database: A systematic genome annotation of transcription factor binding sites in the fruitfly, D.melanogaster
    • November 30, doi:10.1093/bioinformatics/bti173
    • Bergman,C.M., Carlson,J.W. and Celniker,S.E. (November 30, 2004) [i#Drosophila#1i] DNase I footprint database: A systematic genome annotation of transcription factor binding sites in the fruitfly, [i#D.melanogaster. Bioinformatics#1i], doi:10.1093/bioinformatics/bti173.
    • (2004) Bioinformatics
    • Bergman, C.M.1    Carlson, J.W.2    Celniker, S.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.