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Volumn 3, Issue , 2013, Pages

Transcriptome sequencing of neonatal thymic epithelial cells

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Indexed keywords

BIOLOGICAL MARKER;

EID: 84878730343     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep01860     Document Type: Article
Times cited : (60)

References (60)
  • 1
    • 79955483094 scopus 로고    scopus 로고
    • Design principles of adaptive immune systems
    • Boehm, T. Design principles of adaptive immune systems. Nat. Rev. Immunol. 11, 307-317 (2011).
    • (2011) Nat. Rev. Immunol. , vol.11 , pp. 307-317
    • Boehm, T.1
  • 2
    • 42149180562 scopus 로고    scopus 로고
    • Why T cells of thymic versus extrathymic origin are functionally different
    • Blais, M. E. et al. Why T cells of thymic versus extrathymic origin are functionally different. J. Immunol. 180, 2299-2312 (2008).
    • (2008) J. Immunol. , vol.180 , pp. 2299-2312
    • Blais, M.E.1
  • 3
    • 84861664303 scopus 로고    scopus 로고
    • Evolutionof lymphoid tissues
    • Boehm, T., Hess, I. & Swann, J. B. Evolutionof lymphoid tissues. Trends Immunol 33, 315-321 (2012).
    • (2012) Trends Immunol , vol.33 , pp. 315-321
    • Boehm, T.1    Hess, I.2    Swann, J.B.3
  • 4
    • 1842579504 scopus 로고    scopus 로고
    • Do thymically and strictly extrathymically developing T cells generate similar immune responses?
    • Blais, M. E. et al. Do thymically and strictly extrathymically developing T cells generate similar immune responses? Blood 103, 3102-3110 (2004).
    • (2004) Blood , vol.103 , pp. 3102-3110
    • Blais, M.E.1
  • 5
    • 57349119343 scopus 로고    scopus 로고
    • Development and functional propertiesof thymic and extrathymic T lymphocytes
    • Heinonen, K.M. & Perreault, C. Development and functional propertiesof thymic and extrathymic T lymphocytes. Crit. Rev. Immunol. 28, 441-466 (2008).
    • (2008) Crit. Rev. Immunol. , vol.28 , pp. 441-466
    • Heinonen, K.M.1    Perreault, C.2
  • 6
    • 84861656218 scopus 로고    scopus 로고
    • Thymic epithelial cells: Working class heroes for T cell development and repertoire selection
    • Anderson, G. & Takahama, Y. Thymic epithelial cells: working class heroes for T cell development and repertoire selection. Trends Immunol 33 (2012).
    • (2012) Trends Immunol , vol.33
    • Anderson, G.1    Takahama, Y.2
  • 7
    • 36448949476 scopus 로고    scopus 로고
    • Generating intrathymic microenvironments to establish T-cell tolerance
    • DOI 10.1038/nri2187, PII NRI2187
    • Anderson, G., Lane, P. J. & Jenkinson, E. J. Generating intrathymic microenvironments to establish T-cell tolerance. Nat Rev Immunol 7, 954-963 (2007). (Pubitemid 350166055)
    • (2007) Nature Reviews Immunology , vol.7 , Issue.12 , pp. 954-963
    • Anderson, G.1    Lane, P.J.L.2    Jenkinson, E.J.3
  • 8
    • 34247882592 scopus 로고    scopus 로고
    • Zoned out: Functional mapping of stromal signaling microenvironments in the thymus
    • DOI 10.1146/annurev.immunol.23.021704.115715
    • Petrie, H. T. & Zuniga-Pflucker, J. C. Zoned out: functional mapping of stromal signaling microenvironments in the thymus. Annu. Rev. Immunol. 25, 649-679 (2007). (Pubitemid 46697920)
    • (2007) Annual Review of Immunology , vol.25 , pp. 649-679
    • Petrie, H.T.1    Zuniga-Pflucker, J.C.2
  • 9
    • 71749103257 scopus 로고    scopus 로고
    • Spatial mapping of thymic stromal microenvironments reveals unique features influencing T lymphoid differentiation
    • Griffith, A. V. et al. Spatial mapping of thymic stromal microenvironments reveals unique features influencing T lymphoid differentiation. Immunity 31, 999-1009 (2009).
    • (2009) Immunity , vol.31 , pp. 999-1009
    • Griffith, A.V.1
  • 10
    • 38449106709 scopus 로고    scopus 로고
    • The thymus as an inductive site for T lymphopoiesis
    • Ciofani, M. & Zuniga-Pflucker, J. C. The thymus as an inductive site for T lymphopoiesis. Annu. Rev Cell Dev. Biol 23, 463-493 (2007).
    • (2007) Annu. Rev Cell Dev. Biol , vol.23 , pp. 463-493
    • Ciofani, M.1    Zuniga-Pflucker, J.C.2
  • 11
    • 79959646651 scopus 로고    scopus 로고
    • Signal integration and crosstalk during thymocyte migration and emigration
    • Love, P. E. & Bhandoola, A. Signal integration and crosstalk during thymocyte migration and emigration. Nat. Rev. Immunol. 11, 469-477 (2011).
    • (2011) Nat. Rev. Immunol. , vol.11 , pp. 469-477
    • Love, P.E.1    Bhandoola, A.2
  • 13
    • 72949104779 scopus 로고    scopus 로고
    • Antigen presentation in the thymus for positive selection and central tolerance induction
    • Klein, L., Hinterberger, M., Wirnsberger, G. & Kyewski, B. Antigen presentation in the thymus for positive selection and central tolerance induction. Nat. Rev. Immunol. 9, 833-844 (2009).
    • (2009) Nat. Rev. Immunol. , vol.9 , pp. 833-844
    • Klein, L.1    Hinterberger, M.2    Wirnsberger, G.3    Kyewski, B.4
  • 14
    • 84855931651 scopus 로고    scopus 로고
    • The thymic epithelial microRNA network elevates the threshold for infection-associated thymic involution via miR-29a mediated suppression of the IFN-alpha receptor
    • Papadopoulou, A. S. et al. The thymic epithelial microRNA network elevates the threshold for infection-associated thymic involution via miR-29a mediated suppression of the IFN-alpha receptor. Nat. Immunol. 13, 181-187 (2011).
    • (2011) Nat. Immunol. , vol.13 , pp. 181-187
    • Papadopoulou, A.S.1
  • 15
    • 84867287351 scopus 로고    scopus 로고
    • MicroRNAs control the maintenance of thymic epithelia and their competence for T lineage commitment and thymocyte selection
    • Zuklys, S. et al. MicroRNAs control the maintenance of thymic epithelia and their competence for T lineage commitment and thymocyte selection. J Immunol. 189, 3894-3904 (2012).
    • (2012) J Immunol. , vol.189 , pp. 3894-3904
    • Zuklys, S.1
  • 16
    • 78049276268 scopus 로고    scopus 로고
    • Thymopoiesis in mice depends on a Foxn1-positive thymic epithelial cell lineage
    • Corbeaux, T. et al. Thymopoiesis in mice depends on a Foxn1-positive thymic epithelial cell lineage. Proc. Natl. Acad. Sci. U. S. A. 107, 16613-16618 (2010).
    • (2010) Proc. Natl. Acad. Sci. U. S. A. , vol.107 , pp. 16613-16618
    • Corbeaux, T.1
  • 17
    • 81755183079 scopus 로고    scopus 로고
    • Foxn1 regulates lineage progression in cortical and medullary thymic epithelial cells but is dispensable for medullary sublineage divergence
    • Nowell, C. S. et al. Foxn1 regulates lineage progression in cortical and medullary thymic epithelial cells but is dispensable for medullary sublineage divergence. PLoS. Genet. 7, e1002348 (2011).
    • (2011) PLoS. Genet. , vol.7
    • Nowell, C.S.1
  • 18
    • 81055126764 scopus 로고    scopus 로고
    • Wnt4 regulates thymic cellularity through the expansion of thymic epithelial cells and early thymic progenitors
    • Heinonen, K. M. et al. Wnt4 regulates thymic cellularity through the expansion of thymic epithelial cells and early thymic progenitors. Blood 118, 5163-5173 (2011).
    • (2011) Blood , vol.118 , pp. 5163-5173
    • Heinonen, K.M.1
  • 20
    • 84860351016 scopus 로고    scopus 로고
    • Molecular control over thymic involution: From cytokines and microRNA to aging and adipose tissue. Eur
    • Dooley, J. & Liston, A. Molecular control over thymic involution: From cytokines and microRNA to aging and adipose tissue. Eur. J Immunol. 42, 1073-1079 (2012).
    • (2012) J Immunol. , vol.42 , pp. 1073-1079
    • Dooley, J.1    Liston, A.2
  • 21
    • 84855862448 scopus 로고    scopus 로고
    • Persistent degenerative changes in thymic organ function revealed by an inducible model of organ regrowth
    • Griffith, A. V., Fallahi, M., Venables, T. & Petrie, H. T. Persistent degenerative changes in thymic organ function revealed by an inducible model of organ regrowth. Aging Cell 11, 169-177 (2012).
    • (2012) Aging Cell , vol.11 , pp. 169-177
    • Griffith, A.V.1    Fallahi, M.2    Venables, T.3    Petrie, H.T.4
  • 22
    • 78650539308 scopus 로고    scopus 로고
    • From RNA-seq reads to differential expression results
    • Oshlack, A., Robinson, M. D. & Young, M. D. From RNA-seq reads to differential expression results. Genome Biol. 11, 220 (2010).
    • (2010) Genome Biol. , vol.11 , pp. 220
    • Oshlack, A.1    Robinson, M.D.2    Young, M.D.3
  • 23
    • 78751483481 scopus 로고    scopus 로고
    • RNA-seq analysis of 2 closely related leukemia clones that differ in their self-renewal capacity
    • Wilhelm, B. T. et al. RNA-seq analysis of 2 closely related leukemia clones that differ in their self-renewal capacity. Blood 117, e27-e38 (2011).
    • (2011) Blood , vol.117
    • Wilhelm, B.T.1
  • 24
    • 0035545301 scopus 로고    scopus 로고
    • An improved method for culture of epidermal keratinocytes from newborn mouse skin
    • DOI 10.1023/A:1016385109922
    • Hakkinen, L., Koivisto, L. & Larjava, H. An improved method for culture of epidermal keratinocytes from newborn mouse skin. Methods Cell Sci. 23, 189-196 (2001). (Pubitemid 34863291)
    • (2001) Methods in Cell Science , vol.23 , Issue.4 , pp. 189-196
    • Hakkinen, L.1    Koivisto, L.2    Larjava, H.3
  • 25
    • 34247868281 scopus 로고    scopus 로고
    • Medullary thymic epithelial cells expressing Aire represent a unique lineage derived from cells expressing claudin
    • DOI 10.1038/ni1438, PII NI1438
    • Hamazaki, Y. et al. Medullary thymic epithelial cells expressing Aire represent a unique lineage derived from cells expressing claudin. Nat. Immunol. 8, 304-311 (2007). (Pubitemid 46745380)
    • (2007) Nature Immunology , vol.8 , Issue.3 , pp. 304-311
    • Hamazaki, Y.1    Fujita, H.2    Kobayashi, T.3    Choi, Y.4    Scott, H.S.5    Matsumoto, M.6    Minato, N.7
  • 26
    • 33745594603 scopus 로고    scopus 로고
    • Lhx2 maintains stem cell character in hair follicles
    • DOI 10.1126/science.1128004
    • Rhee, H., Polak, L. & Fuchs, E. Lhx2 maintains stem cell character in hair follicles. Science 312, 1946-1949 (2006). (Pubitemid 43993720)
    • (2006) Science , vol.312 , Issue.5782 , pp. 1946-1949
    • Rhee, H.1    Polak, L.2    Fuchs, E.3
  • 27
    • 57649212322 scopus 로고    scopus 로고
    • Galectin-7 in the control of epidermal homeostasis after injury
    • Gendronneau, G. et al. Galectin-7 in the control of epidermal homeostasis after injury. Mol. Biol. Cell 19, 5541-5549 (2008).
    • (2008) Mol. Biol. Cell , vol.19 , pp. 5541-5549
    • Gendronneau, G.1
  • 28
    • 84862670103 scopus 로고    scopus 로고
    • Loss of hairless confers susceptibility to UVB-induced tumorigenesis via disruption of NF-kappaB signaling
    • Kim, H. et al. Loss of hairless confers susceptibility to UVB-induced tumorigenesis via disruption of NF-kappaB signaling. PLoS One 7, e39691 (2012).
    • (2012) PLoS One , vol.7
    • Kim, H.1
  • 29
    • 84873562874 scopus 로고    scopus 로고
    • Keratin 1 maintains skin integrity and participates in an inflammatory network in skin through interleukin-18
    • Roth, W. et al. Keratin 1 maintains skin integrity and participates in an inflammatory network in skin through interleukin-18. J Cell Sci. 125, 5269-5279 (2012).
    • (2012) J Cell Sci. , vol.125 , pp. 5269-5279
    • Roth, W.1
  • 30
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • DOI 10.1038/nmeth.1226, PII NMETH.1226
    • Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L. & Wold, B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5, 621-628 (2008). (Pubitemid 351911867)
    • (2008) Nature Methods , vol.5 , Issue.7 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 32
    • 40849083439 scopus 로고    scopus 로고
    • Rac mediates TNF-induced cytokine production via modulation of NF-kappaB
    • Williams, L. M. et al. Rac mediates TNF-induced cytokine production via modulation of NF-kappaB. Mol. Immunol 45, 2446-2454 (2008).
    • (2008) Mol. Immunol , vol.45 , pp. 2446-2454
    • Williams, L.M.1
  • 33
    • 84863561591 scopus 로고    scopus 로고
    • Oncogenic PI3K mutations lead to NF-kappaB-dependent cytokine expression following growth factor deprivation
    • Hutti, J. E. et al. Oncogenic PI3K mutations lead to NF-kappaB-dependent cytokine expression following growth factor deprivation. Cancer Res. 72, 3260-3269 (2012).
    • (2012) Cancer Res. , vol.72 , pp. 3260-3269
    • Hutti, J.E.1
  • 34
    • 84872172303 scopus 로고    scopus 로고
    • TNF receptor family signaling in the development and functions of medullary thymic epithelial cells
    • Akiyama, T., Shinzawa, M. & Akiyama, N. TNF receptor family signaling in the development and functions of medullary thymic epithelial cells. Front Immunol 3, 278 (2012).
    • (2012) Front Immunol , vol.3 , pp. 278
    • Akiyama, T.1    Shinzawa, M.2    Akiyama, N.3
  • 35
    • 77957245870 scopus 로고    scopus 로고
    • Conserved F-actin dynamics and force transmission at cell adhesions
    • Maruthamuthu, V., Aratyn-Schaus, Y. & Gardel, M. L. Conserved F-actin dynamics and force transmission at cell adhesions. Curr. Opin. Cell Biol. 22, 583-588 (2010).
    • (2010) Curr. Opin. Cell Biol. , vol.22 , pp. 583-588
    • Maruthamuthu, V.1    Aratyn-Schaus, Y.2    Gardel, M.L.3
  • 36
    • 84865740818 scopus 로고    scopus 로고
    • HDAC inhibitors augmented cell migration and metastasis through induction of PKCs leading to identification of low toxicity modalities for combination cancer therapy
    • Lin, K. T. et al. HDAC inhibitors augmented cell migration and metastasis through induction of PKCs leading to identification of low toxicity modalities for combination cancer therapy. Clin. Cancer Res. 18, 4691-4701 (2012).
    • (2012) Clin. Cancer Res. , vol.18 , pp. 4691-4701
    • Lin, K.T.1
  • 37
    • 75749155892 scopus 로고    scopus 로고
    • From signaling pathways to microtubule dynamics: The key players
    • Etienne-Manneville, S. From signaling pathways to microtubule dynamics: the key players. Curr. Opin. Cell Biol. 22, 104-111 (2010).
    • (2010) Curr. Opin. Cell Biol. , vol.22 , pp. 104-111
    • Etienne-Manneville, S.1
  • 38
    • 84855602576 scopus 로고    scopus 로고
    • Interplay between microtubule dynamics and intracellular organization
    • de Forges, H., Bouissou, A. & Perez, F. Interplay between microtubule dynamics and intracellular organization. Int. J Biochem. Cell Biol. 44, 266-274 (2012).
    • (2012) Int. J Biochem. Cell Biol. , vol.44 , pp. 266-274
    • De Forges, H.1    Bouissou, A.2    Perez, F.3
  • 39
    • 70450239488 scopus 로고    scopus 로고
    • Kinesin-1 regulates microtubule dynamics via a c-Jun N-terminal kinase-dependent mechanism
    • Daire, V. et al. Kinesin-1 regulates microtubule dynamics via a c-Jun N-terminal kinase-dependent mechanism. J Biol. Chem. 284, 31992-32001 (2009).
    • (2009) J Biol. Chem. , vol.284 , pp. 31992-32001
    • Daire, V.1
  • 40
    • 50849127509 scopus 로고    scopus 로고
    • PI3-K and GSK-3: Akt-ing together with microtubules
    • Buttrick, G. J. & Wakefield, J. G. PI3-K and GSK-3: Akt-ing together with microtubules. Cell Cycle 7, 2621-2625 (2008).
    • (2008) Cell Cycle , vol.7 , pp. 2621-2625
    • Buttrick, G.J.1    Wakefield, J.G.2
  • 41
    • 46749097841 scopus 로고    scopus 로고
    • The signaling protein Wnt4 enhances thymopoiesis and expands multipotent hematopoietic progenitors through b-catenin-independent signaling
    • Louis, J. et al. The signaling protein Wnt4 enhances thymopoiesis and expands multipotent hematopoietic progenitors through b-catenin-independent signaling. Immunity 29, 57-67 (2008).
    • (2008) Immunity , vol.29 , pp. 57-67
    • Louis, J.1
  • 42
    • 60749109846 scopus 로고    scopus 로고
    • Cell cycle, CDKs and cancer:A changing paradigm
    • Malumbres, M. & Barbacid, M. Cell cycle, CDKs and cancer:a changing paradigm. Nat Rev Cancer 9, 153-166 (2009).
    • (2009) Nat Rev Cancer , vol.9 , pp. 153-166
    • Malumbres, M.1    Barbacid, M.2
  • 43
    • 8644219655 scopus 로고    scopus 로고
    • Living with or without cyclins and cyclin-dependent kinases
    • DOI 10.1101/gad.1256504
    • Sherr, C. J. & Roberts, J. M. Living with or without cyclins and cyclin-dependent kinases. Genes Dev. 18, 2699-2711 (2004). (Pubitemid 39507762)
    • (2004) Genes and Development , vol.18 , Issue.22 , pp. 2699-2711
    • Sherr, C.J.1    Roberts, J.M.2
  • 44
    • 73549084505 scopus 로고    scopus 로고
    • Histone h3 exerts a key function in mitotic checkpoint control
    • Luo, J. et al. Histone h3 exerts a key function in mitotic checkpoint control. Mol. Cell Biol. 30, 537-549 (2010).
    • (2010) Mol. Cell Biol. , vol.30 , pp. 537-549
    • Luo, J.1
  • 45
    • 78649835035 scopus 로고    scopus 로고
    • A small GTPase molecular switch regulates epigenetic centromere maintenance by stabilizing newly incorporated CENP-A
    • Lagana, A. et al. A small GTPase molecular switch regulates epigenetic centromere maintenance by stabilizing newly incorporated CENP-A. Nat Cell Biol. 12, 1186-1193 (2010).
    • (2010) Nat Cell Biol. , vol.12 , pp. 1186-1193
    • Lagana, A.1
  • 46
    • 34447115130 scopus 로고    scopus 로고
    • Histone deacetylase inhibitors induce premature sister chromatid separation and override the mitotic spindle assembly checkpoint
    • DOI 10.1158/0008-5472.CAN-06-3012
    • Magnaghi-Jaulin, L., Eot-Houllier, G., Fulcrand, G. & Jaulin, C. Histone deacetylase inhibitors induce premature sister chromatid separation and override the mitotic spindle assembly checkpoint. Cancer Res. 67, 6360-6367 (2007). (Pubitemid 47037519)
    • (2007) Cancer Research , vol.67 , Issue.13 , pp. 6360-6367
    • Magnaghi-Jaulin, L.1    Eot-Houllier, G.2    Fulcrand, G.3    Jaulin, C.4
  • 47
    • 67649472398 scopus 로고    scopus 로고
    • Novel anticancer targets: Revisiting ERBB2 and discovering ERBB3
    • Baselga, J. & Swain, S. M. Novel anticancer targets: revisiting ERBB2 and discovering ERBB3. Nat Rev Cancer 9, 463-475 (2009).
    • (2009) Nat Rev Cancer , vol.9 , pp. 463-475
    • Baselga, J.1    Swain, S.M.2
  • 48
    • 77952523404 scopus 로고    scopus 로고
    • MYCN oncoprotein targets and their therapeutic potential
    • Bell, E. et al. MYCN oncoprotein targets and their therapeutic potential. Cancer Lett. 293, 144-157 (2010).
    • (2010) Cancer Lett. , vol.293 , pp. 144-157
    • Bell, E.1
  • 50
    • 4444243096 scopus 로고    scopus 로고
    • Tumor-specific shared antigenic peptides recognized by human T cells
    • van der Bruggen, P. et al. Tumor-specific shared antigenic peptides recognized by human T cells. Immunol. Rev. 188, 51-64 (2002).
    • (2002) Immunol. Rev. , vol.188 , pp. 51-64
    • Van Der Bruggen, P.1
  • 52
    • 77958126305 scopus 로고    scopus 로고
    • Transcriptional regulationofthymus organogenesis and thymic epithelial cell differentiation
    • Manley, N.R. & Condie, B.G. Transcriptional regulationofthymus organogenesis and thymic epithelial cell differentiation. Prog. Mol. Biol. Transl. Sci. 92, 103-120 (2010).
    • (2010) Prog. Mol. Biol. Transl. Sci. , vol.92 , pp. 103-120
    • Manley, N.R.1    Condie, B.G.2
  • 53
    • 84859208234 scopus 로고    scopus 로고
    • Synergistic context-dependent, and hierarchical functions of epithelial components in thymic microenvironments
    • Calderon, L. & Boehm, T. Synergistic, context-dependent, and hierarchical functions of epithelial components in thymic microenvironments. Cell 149, 159-172 (2012).
    • (2012) Cell , vol.149 , pp. 159-172
    • Calderon, L.1    Boehm, T.2
  • 54
    • 77950407764 scopus 로고    scopus 로고
    • CCR7 and CCR9 together recruit hematopoietic progenitors to the adult thymus
    • Zlotoff, D. A. et al. CCR7 and CCR9 together recruit hematopoietic progenitors to the adult thymus. Blood 115, 1897-1905 (2010).
    • (2010) Blood , vol.115 , pp. 1897-1905
    • Zlotoff, D.A.1
  • 57
    • 79958263078 scopus 로고    scopus 로고
    • Strategies for homeostatic stem cell self-renewal in adult tissues
    • Simons, B. D. & Clevers, H. Strategies for homeostatic stem cell self-renewal in adult tissues. Cell 145, 851-862 (2011).
    • (2011) Cell , vol.145 , pp. 851-862
    • Simons, B.D.1    Clevers, H.2
  • 58
    • 84866496377 scopus 로고    scopus 로고
    • Purified enzymes improve isolation and characterization of the adult thymic epithelium
    • Seach, N., Wong, K., Hammett, M., Boyd, R. L. & Chidgey, A. P. Purified enzymes improve isolation and characterization of the adult thymic epithelium. J Immunol Methods 385, 23-34 (2012).
    • (2012) J Immunol Methods , vol.385 , pp. 23-34
    • Seach, N.1    Wong, K.2    Hammett, M.3    Boyd, R.L.4    Chidgey, A.P.5
  • 60
    • 33747894577 scopus 로고    scopus 로고
    • TM4 microarray software suite
    • Saeed, A. I. et al. TM4 microarray software suite. Methods Enzymol. 411, 134-193 (2006).
    • (2006) Methods Enzymol. , vol.411 , pp. 134-193
    • Saeed, A.I.1


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