-
1
-
-
77949284153
-
Insights into piezophily from genetic studies on the deep-sea bacterium, Photobacterium profundum SS9
-
El-Hajj ZW, Allcock D, Tryfona T, Lauro FM, Sawyer L, et al. (2010) Insights into piezophily from genetic studies on the deep-sea bacterium, Photobacterium profundum SS9. Ann N Y Acad Sci 1189: 143-148.
-
(2010)
Ann N Y Acad Sci
, vol.1189
, pp. 143-148
-
-
El-Hajj, Z.W.1
Allcock, D.2
Tryfona, T.3
Lauro, F.M.4
Sawyer, L.5
-
2
-
-
77949281139
-
Introduction to high-pressure bioscience and biotechnology
-
Bartlett DH, (2010) Introduction to high-pressure bioscience and biotechnology. Ann N Y Acad Sci 1189: 1-5.
-
(2010)
Ann N Y Acad Sci
, vol.1189
, pp. 1-5
-
-
Bartlett, D.H.1
-
3
-
-
0028895181
-
High pressure influences on gene and protein expression
-
Bartlett DH, Kato C, Horikoshi K, (1995) High pressure influences on gene and protein expression. Res Microbiol 146: 697-706.
-
(1995)
Res Microbiol
, vol.146
, pp. 697-706
-
-
Bartlett, D.H.1
Kato, C.2
Horikoshi, K.3
-
4
-
-
25444509003
-
Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains
-
Campanaro S, Vezzi A, Vitulo N, Lauro FM, D'Angelo M, et al. (2005) Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains. BMC Genomics 6: 122.
-
(2005)
BMC Genomics
, vol.6
, pp. 122
-
-
Campanaro, S.1
Vezzi, A.2
Vitulo, N.3
Lauro, F.M.4
D'Angelo, M.5
-
5
-
-
79952097439
-
Diversity and impact of prokaryotic toxins on aquatic environments: a review
-
Valerio E, Chaves S, Tenreiro R, (2010) Diversity and impact of prokaryotic toxins on aquatic environments: a review. Toxins (Basel) 2: 2359-2410.
-
(2010)
Toxins (Basel)
, vol.2
, pp. 2359-2410
-
-
Valerio, E.1
Chaves, S.2
Tenreiro, R.3
-
6
-
-
20044393188
-
Life at depth: Photobacterium profundum genome sequence and expression analysis
-
Vezzi A, Campanaro S, D'Angelo M, Simonato F, Vitulo N, et al. (2005) Life at depth: Photobacterium profundum genome sequence and expression analysis. Science 307: 1459-1461.
-
(2005)
Science
, vol.307
, pp. 1459-1461
-
-
Vezzi, A.1
Campanaro, S.2
D'Angelo, M.3
Simonato, F.4
Vitulo, N.5
-
7
-
-
0028831045
-
ompH gene expression is regulated by multiple environmental cues in addition to high pressure in the deep-sea bacterium Photobacterium species strain SS9
-
Bartlett DH, Welch TJ, (1995) ompH gene expression is regulated by multiple environmental cues in addition to high pressure in the deep-sea bacterium Photobacterium species strain SS9. J Bacteriol 177: 1008-1016.
-
(1995)
J Bacteriol
, vol.177
, pp. 1008-1016
-
-
Bartlett, D.H.1
Welch, T.J.2
-
8
-
-
0024981678
-
Isolation of a gene regulated by hydrostatic pressure in a deep-sea bacterium
-
Bartlett D, Wright M, Yayanos AA, Silverman M, (1989) Isolation of a gene regulated by hydrostatic pressure in a deep-sea bacterium. Nature 342: 572-574.
-
(1989)
Nature
, vol.342
, pp. 572-574
-
-
Bartlett, D.1
Wright, M.2
Yayanos, A.A.3
Silverman, M.4
-
9
-
-
54949088268
-
The deep-sea bacterium Photobacterium profundum SS9 utilizes separate flagellar systems for swimming and swarming under high-pressure conditions
-
Eloe EA, Lauro FM, Vogel RF, Bartlett DH, (2008) The deep-sea bacterium Photobacterium profundum SS9 utilizes separate flagellar systems for swimming and swarming under high-pressure conditions. Appl Environ Microbiol 74: 6298-6305.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 6298-6305
-
-
Eloe, E.A.1
Lauro, F.M.2
Vogel, R.F.3
Bartlett, D.H.4
-
10
-
-
13844311068
-
Integrated transcriptome and proteome data: the challenges ahead
-
Hack CJ, (2004) Integrated transcriptome and proteome data: the challenges ahead. Brief Funct Genomic Proteomic 3: 212-219.
-
(2004)
Brief Funct Genomic Proteomic
, vol.3
, pp. 212-219
-
-
Hack, C.J.1
-
11
-
-
0033016717
-
Correlation between protein and mRNA abundance in yeast
-
Gygi SP, Rochon Y, Franza BR, Aebersold R, (1999) Correlation between protein and mRNA abundance in yeast. Mol Cell Biol 19: 1720-1730.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 1720-1730
-
-
Gygi, S.P.1
Rochon, Y.2
Franza, B.R.3
Aebersold, R.4
-
12
-
-
0032694167
-
A sampling of the yeast proteome
-
Futcher B, Latter GI, Monardo P, McLaughlin CS, Garrels JI, (1999) A sampling of the yeast proteome. Mol Cell Biol 19: 7357-7368.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 7357-7368
-
-
Futcher, B.1
Latter, G.I.2
Monardo, P.3
McLaughlin, C.S.4
Garrels, J.I.5
-
14
-
-
77955462279
-
Addressing accuracy and precision issues in iTRAQ quantitation
-
Karp NA, Huber W, Sadowski PG, Charles PD, Hester SV, et al. (2010) Addressing accuracy and precision issues in iTRAQ quantitation. Mol Cell Proteomics 9: 1885-1897.
-
(2010)
Mol Cell Proteomics
, vol.9
, pp. 1885-1897
-
-
Karp, N.A.1
Huber, W.2
Sadowski, P.G.3
Charles, P.D.4
Hester, S.V.5
-
15
-
-
3543093198
-
The reproducible acquisition of comparative liquid chromatography/tandem mass spectrometry data from complex biological samples
-
Stewart, II, Zhao L, Le Bihan T, Larsen B, Scozzaro S, et al. (2004) The reproducible acquisition of comparative liquid chromatography/tandem mass spectrometry data from complex biological samples. Rapid Commun Mass Spectrom 18: 1697-1710.
-
(2004)
Rapid Commun Mass Spectrom
, vol.18
, pp. 1697-1710
-
-
Stewart, I.I.1
Zhao, L.2
Le Bihan, T.3
Larsen, B.4
Scozzaro, S.5
-
16
-
-
10744233766
-
Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards
-
Wang W, Zhou H, Lin H, Roy S, Shaler TA, et al. (2003) Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards. Anal Chem 75: 4818-4826.
-
(2003)
Anal Chem
, vol.75
, pp. 4818-4826
-
-
Wang, W.1
Zhou, H.2
Lin, H.3
Roy, S.4
Shaler, T.A.5
-
17
-
-
11144334589
-
Definition and characterization of a "trypsinosome" from specific peptide characteristics by nano-HPLC-MS/MS and in silico analysis of complex protein mixtures
-
Le Bihan T, Robinson MD, Stewart, II, Figeys D, (2004) Definition and characterization of a "trypsinosome" from specific peptide characteristics by nano-HPLC-MS/MS and in silico analysis of complex protein mixtures. J Proteome Res 3: 1138-1148.
-
(2004)
J Proteome Res
, vol.3
, pp. 1138-1148
-
-
Le Bihan, T.1
Robinson, M.D.2
Stewart, I.I.3
Figeys, D.4
-
18
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox J, Mann M, (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol 26: 1367-1372.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
19
-
-
35348965139
-
SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling
-
Mueller LN, Rinner O, Schmidt A, Letarte S, Bodenmiller B, et al. (2007) SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling. Proteomics 7: 3470-3480.
-
(2007)
Proteomics
, vol.7
, pp. 3470-3480
-
-
Mueller, L.N.1
Rinner, O.2
Schmidt, A.3
Letarte, S.4
Bodenmiller, B.5
-
20
-
-
79551500036
-
Less label, more free: approaches in label-free quantitative mass spectrometry
-
Neilson KA, Ali NA, Muralidharan S, Mirzaei M, Mariani M, et al. (2011) Less label, more free: approaches in label-free quantitative mass spectrometry. Proteomics 11: 535-553.
-
(2011)
Proteomics
, vol.11
, pp. 535-553
-
-
Neilson, K.A.1
Ali, N.A.2
Muralidharan, S.3
Mirzaei, M.4
Mariani, M.5
-
21
-
-
0027436748
-
Use of a reporter gene to follow high-pressure signal transduction in the deep-sea bacterium Photobacterium sp. strain SS9
-
Chi E, Bartlett DH, (1993) Use of a reporter gene to follow high-pressure signal transduction in the deep-sea bacterium Photobacterium sp. strain SS9. J Bacteriol 175: 7533-7540.
-
(1993)
J Bacteriol
, vol.175
, pp. 7533-7540
-
-
Chi, E.1
Bartlett, D.H.2
-
22
-
-
0032914127
-
Monounsaturated but not polyunsaturated fatty acids are required for growth of the deep-sea bacterium Photobacterium profundum SS9 at high pressure and low temperature
-
Allen EE, Facciotti D, Bartlett DH, (1999) Monounsaturated but not polyunsaturated fatty acids are required for growth of the deep-sea bacterium Photobacterium profundum SS9 at high pressure and low temperature. Appl Environ Microbiol 65: 1710-1720.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 1710-1720
-
-
Allen, E.E.1
Facciotti, D.2
Bartlett, D.H.3
-
23
-
-
70350445583
-
Importance of proteins controlling initiation of DNA replication in the growth of the high-pressure-loving bacterium Photobacterium profundum SS9
-
El-Hajj ZW, Tryfona T, Allcock DJ, Hasan F, Lauro FM, et al. (2009) Importance of proteins controlling initiation of DNA replication in the growth of the high-pressure-loving bacterium Photobacterium profundum SS9. J Bacteriol 191: 6383-6393.
-
(2009)
J Bacteriol
, vol.191
, pp. 6383-6393
-
-
El-Hajj, Z.W.1
Tryfona, T.2
Allcock, D.J.3
Hasan, F.4
Lauro, F.M.5
-
24
-
-
77949903861
-
Quantitative analysis of low-abundance peptides in HeLa cell cytoplasm by targeted liquid chromatography/mass spectrometry and stable isotope dilution: emphasising the distinction between peptide detection and peptide identification
-
Le Bihan T, Grima R, Martin S, Forster T, Le Bihan Y, (2010) Quantitative analysis of low-abundance peptides in HeLa cell cytoplasm by targeted liquid chromatography/mass spectrometry and stable isotope dilution: emphasising the distinction between peptide detection and peptide identification. Rapid Commun Mass Spectrom 24: 1093-1104.
-
(2010)
Rapid Commun Mass Spectrom
, vol.24
, pp. 1093-1104
-
-
Le Bihan, T.1
Grima, R.2
Martin, S.3
Forster, T.4
Le Bihan, Y.5
-
25
-
-
80052028934
-
Shotgun proteomic analysis of the unicellular alga Ostreococcus tauri
-
Le Bihan T, Martin SF, Chirnside ES, van Ooijen G, Barrios-Llerena ME, et al. (2011) Shotgun proteomic analysis of the unicellular alga Ostreococcus tauri. J Proteomics 74: 2060-2070.
-
(2011)
J Proteomics
, vol.74
, pp. 2060-2070
-
-
Le Bihan, T.1
Martin, S.F.2
Chirnside, E.S.3
van Ooijen, G.4
Barrios-Llerena, M.E.5
-
26
-
-
77954199597
-
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
-
Yu NY, Wagner JR, Laird MR, Melli G, Rey S, et al. (2010) PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics 26: 1608-1615.
-
(2010)
Bioinformatics
, vol.26
, pp. 1608-1615
-
-
Yu, N.Y.1
Wagner, J.R.2
Laird, M.R.3
Melli, G.4
Rey, S.5
-
27
-
-
33746218840
-
Prediction of protein subcellular localization
-
Yu CS, Chen YC, Lu CH, Hwang JK, (2006) Prediction of protein subcellular localization. Proteins 64: 643-651.
-
(2006)
Proteins
, vol.64
, pp. 643-651
-
-
Yu, C.S.1
Chen, Y.C.2
Lu, C.H.3
Hwang, J.K.4
-
28
-
-
84875767525
-
High sequence variability, diverse subcellular localizations, and ecological implications of alkaline phosphatase in dinoflagellates and other eukaryotic phytoplankton
-
Lin X, Zhang H, Cui Y, Lin S, (2012) High sequence variability, diverse subcellular localizations, and ecological implications of alkaline phosphatase in dinoflagellates and other eukaryotic phytoplankton. Front Microbiol 3: 235.
-
(2012)
Front Microbiol
, vol.3
, pp. 235
-
-
Lin, X.1
Zhang, H.2
Cui, Y.3
Lin, S.4
-
29
-
-
79959986975
-
KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
-
Xie C, Mao X, Huang J, Ding Y, Wu J, et al. (2011) KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases. Nucleic Acids Res 39: W316-322.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Xie, C.1
Mao, X.2
Huang, J.3
Ding, Y.4
Wu, J.5
-
30
-
-
67650484732
-
PRIDE Converter: making proteomics data-sharing easy
-
Barsnes H, Vizcaino JA, Eidhammer I, Martens L, (2009) PRIDE Converter: making proteomics data-sharing easy. Nat Biotechnol 27: 598-599.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 598-599
-
-
Barsnes, H.1
Vizcaino, J.A.2
Eidhammer, I.3
Martens, L.4
-
31
-
-
0037171156
-
Pressure effects on in vivo microbial processes
-
Bartlett DH, (2002) Pressure effects on in vivo microbial processes. Biochim Biophys Acta 1595: 367-381.
-
(2002)
Biochim Biophys Acta
, vol.1595
, pp. 367-381
-
-
Bartlett, D.H.1
-
32
-
-
0031779823
-
Identification of a regulatory protein required for pressure-responsive gene expression in the deep-sea bacterium Photobacterium species strain SS9
-
Welch TJ, Bartlett DH, (1998) Identification of a regulatory protein required for pressure-responsive gene expression in the deep-sea bacterium Photobacterium species strain SS9. Mol Microbiol 27: 977-985.
-
(1998)
Mol Microbiol
, vol.27
, pp. 977-985
-
-
Welch, T.J.1
Bartlett, D.H.2
-
33
-
-
84878602481
-
-
Carbon cycle modelling; Bolin B, editor. New York: Wiley
-
Takahashi T, Broecker W, AE B (1981) Carbon cycle modelling; Bolin B, editor. New York: Wiley.
-
(1981)
-
-
Takahashi, T.1
Broecker, W.2
Ae, B.3
-
35
-
-
77953590873
-
Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments
-
Aono E, Baba T, Ara T, Nishi T, Nakamichi T, et al. (2010) Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments. Mol Biosyst 6: 1216-1226.
-
(2010)
Mol Biosyst
, vol.6
, pp. 1216-1226
-
-
Aono, E.1
Baba, T.2
Ara, T.3
Nishi, T.4
Nakamichi, T.5
-
36
-
-
0033170609
-
Pressure response in deep-sea piezophilic bacteria
-
Kato C, Qureshi MH, (1999) Pressure response in deep-sea piezophilic bacteria. J Mol Microbiol Biotechnol 1: 87-92.
-
(1999)
J Mol Microbiol Biotechnol
, vol.1
, pp. 87-92
-
-
Kato, C.1
Qureshi, M.H.2
-
37
-
-
79957798844
-
Piezotolerance of the respiratory terminal oxidase activity of the piezophilic Shewanella violacea DSS12 as compared with non-piezophilic Shewanella species
-
Tamegai H, Ota Y, Haga M, Fujimori H, Kato C, et al. (2011) Piezotolerance of the respiratory terminal oxidase activity of the piezophilic Shewanella violacea DSS12 as compared with non-piezophilic Shewanella species. Biosci Biotechnol Biochem 75: 919-924.
-
(2011)
Biosci Biotechnol Biochem
, vol.75
, pp. 919-924
-
-
Tamegai, H.1
Ota, Y.2
Haga, M.3
Fujimori, H.4
Kato, C.5
-
38
-
-
77954809358
-
The structure of cbb3 cytochrome oxidase provides insights into proton pumping
-
Buschmann S, Warkentin E, Xie H, Langer JD, Ermler U, et al. (2010) The structure of cbb3 cytochrome oxidase provides insights into proton pumping. Science 329: 327-330.
-
(2010)
Science
, vol.329
, pp. 327-330
-
-
Buschmann, S.1
Warkentin, E.2
Xie, H.3
Langer, J.D.4
Ermler, U.5
-
39
-
-
42149150462
-
The phosphate regulon and bacterial virulence: a regulatory network connecting phosphate homeostasis and pathogenesis
-
Lamarche MG, Wanner BL, Crepin S, Harel J, (2008) The phosphate regulon and bacterial virulence: a regulatory network connecting phosphate homeostasis and pathogenesis. FEMS Microbiol Rev 32: 461-473.
-
(2008)
FEMS Microbiol Rev
, vol.32
, pp. 461-473
-
-
Lamarche, M.G.1
Wanner, B.L.2
Crepin, S.3
Harel, J.4
-
40
-
-
33847706072
-
The oceanic phosphorus cycle
-
Paytan A, McLaughlin K, (2007) The oceanic phosphorus cycle. Chem Rev 107: 563-576.
-
(2007)
Chem Rev
, vol.107
, pp. 563-576
-
-
Paytan, A.1
McLaughlin, K.2
-
41
-
-
0033056563
-
The biochemical diversity of life near and above 100 degrees C in marine environments
-
Adams MW, (1998) The biochemical diversity of life near and above 100 degrees C in marine environments. J Appl Microbiol 85Suppl 1: 108S-117S.
-
(1998)
J Appl Microbiol
, vol.85
-
-
Adams, M.W.1
-
42
-
-
0025348918
-
Pressure-induced dissociation of tight couple ribosomes
-
Gross M, Jaenicke R, (1990) Pressure-induced dissociation of tight couple ribosomes. FEBS Lett 267: 239-241.
-
(1990)
FEBS Lett
, vol.267
, pp. 239-241
-
-
Gross, M.1
Jaenicke, R.2
-
43
-
-
0014211189
-
Induction, transcription and translation in Escherichia coli: a hydrostatic pressure study
-
Landau JV, (1967) Induction, transcription and translation in Escherichia coli: a hydrostatic pressure study. Biochim Biophys Acta 149: 506-512.
-
(1967)
Biochim Biophys Acta
, vol.149
, pp. 506-512
-
-
Landau, J.V.1
-
44
-
-
0141535337
-
Evaluation of high hydrostatic pressure sensitivity of Staphylococcus aureus and Escherichia coli O157:H7 by differential scanning calorimetry
-
Alpas H, Lee J, Bozoglu F, Kaletunc G, (2003) Evaluation of high hydrostatic pressure sensitivity of Staphylococcus aureus and Escherichia coli O157:H7 by differential scanning calorimetry. Int J Food Microbiol 87: 229-237.
-
(2003)
Int J Food Microbiol
, vol.87
, pp. 229-237
-
-
Alpas, H.1
Lee, J.2
Bozoglu, F.3
Kaletunc, G.4
-
45
-
-
27744544657
-
Transcriptional response reveals translation machinery as target for high pressure in Lactobacillus sanfranciscensis
-
Pavlovic M, Hormann S, Vogel RF, Ehrmann MA, (2005) Transcriptional response reveals translation machinery as target for high pressure in Lactobacillus sanfranciscensis. Arch Microbiol 184: 11-17.
-
(2005)
Arch Microbiol
, vol.184
, pp. 11-17
-
-
Pavlovic, M.1
Hormann, S.2
Vogel, R.F.3
Ehrmann, M.A.4
-
46
-
-
39749129718
-
Large-scale transposon mutagenesis of Photobacterium profundum SS9 reveals new genetic loci important for growth at low temperature and high pressure
-
Lauro FM, Tran K, Vezzi A, Vitulo N, Valle G, et al. (2008) Large-scale transposon mutagenesis of Photobacterium profundum SS9 reveals new genetic loci important for growth at low temperature and high pressure. J Bacteriol 190: 1699-1709.
-
(2008)
J Bacteriol
, vol.190
, pp. 1699-1709
-
-
Lauro, F.M.1
Tran, K.2
Vezzi, A.3
Vitulo, N.4
Valle, G.5
-
47
-
-
33748749355
-
Piezophilic adaptation: a genomic point of view
-
Simonato F, Campanaro S, Lauro FM, Vezzi A, D'Angelo M, et al. (2006) Piezophilic adaptation: a genomic point of view. J Biotechnol 126: 11-25.
-
(2006)
J Biotechnol
, vol.126
, pp. 11-25
-
-
Simonato, F.1
Campanaro, S.2
Lauro, F.M.3
Vezzi, A.4
D'Angelo, M.5
-
48
-
-
84865594221
-
Transcriptome and proteome dynamics of a light-dark synchronized bacterial cell cycle
-
Waldbauer JR, Rodrigue S, Coleman ML, Chisholm SW, (2012) Transcriptome and proteome dynamics of a light-dark synchronized bacterial cell cycle. PLoS One 7: e43432.
-
(2012)
PLoS One
, vol.7
-
-
Waldbauer, J.R.1
Rodrigue, S.2
Coleman, M.L.3
Chisholm, S.W.4
|