Insights into piezophily from genetic studies on the deep-sea bacterium, Photobacterium profundum SS9

Annals of the New York Academy of Sciences

Volumn 1189, Issue , 2010, Pages 143-148

  El Hajj, Ziad W ^a   Allcock, David ^a,b   Tryfona, Theodora ^a   Lauro, Federico M ^c   Sawyer, Lindsay ^a   Bartlett, Douglas H ^c   Ferguson, Gail P ^b  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b UNIVERSITY OF ABERDEEN   (United Kingdom)

^c UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

Cell envelope; DNA replication; H NS; Piezophily; RecD

Indexed keywords

BACTERIAL CELL WALL; BACTERIAL GENOME; BACTERIAL GROWTH; COLD ACCLIMATIZATION; CONFERENCE PAPER; DEEP SEA; DNA REPLICATION; HYPERBARISM; NONHUMAN; PHOTOBACTERIUM PHOSPHOREUM; PIEZOPHILY;

BACTERIA (MICROORGANISMS); PHOTOBACTERIUM PROFUNDUM;

EID: 77949284153     PISSN: 00778923     EISSN: 17496632     Source Type: Book Series    
DOI: 10.1111/j.1749-6632.2009.05178.x     Document Type: Conference Paper

References (30)

1. Abe, F. 8c K. Horikoshi. 2001. The biotechnological potential of piezophiles. Trends Biotechnol. 19:102-108.
2. Bartlett, D., M. Wright, A.A. Yayanos 8c M. Silverman. 1989. Isolation of a gene regulated by hydrostatic pressure in a deep-sea bacterium. Nature 342: 572-574.
3. DeLong, E.R 1986. Adaptations of deep-sea bacteria to the abyssal environment. Ph.D. thesis, University of California, San Diego.
4. Allen, E.E. 8c D.H. Bartlett. 2000. FabF is required for piezoregulation of cis-vaccenic acid levels and piezophilic growth of the deep-sea bacterium Photobacterium profundum strain SS9. J. Bacteriol 182: 1264-1271.
5. Allen, E.E., D. Facciotti 8c D.H. Bartlet. 1999. Monounsaturated but not polyunsaturated fatty acids are required for growth of the deep-sea bacterium Photobacterium profundum SS9 at high pressure and low temperature. Appl. Environ. Microbiol. 65:1710-1720.
6. Bidle, K. 8c D.H. Bartlett. 1999. RecD function is required for high-pressure growth of a deep-sea bacterium. J. Bacteriol. 181: 2330-2337.
7. Chi, E. 8c D.H. Bartlett. 1993. Use of a reporter gene to follow high-pressure signal transduction in the deepsea bacterium Photobacterium sp. strain SS9. J. Bacteriol. 175: 7533-7540.
8. Chi, E. 8c D.H. Bartlett. 1995. An rpof-like locus controls outer membrane protein synthesis and growth at cold temperatures and high pressures in the deep-sea bacterium Photobacterium sp. strain SS9. Mol Microbiol 17:713-726.
9. Lauro, F.M., E.A. Eloe, N. Liverani, G. Bertoloni 8c D.H. Bartlett. 2005. Conjugal vectors for cloning, expression, and insertional mutagenesis in Gram-negative bacteria. BioTechniques 38: 708-712.
10. Lauro, F.M., K. Tran, A. Vezzi, et al. 2008. Large-scale transposon mutagenesis of Photobacterium profundum SS9 reveals new genetic loci important for growth at low temperature and high pressure. J. Bacteriol. 190: 1699-1709
11. 11. Vezzi, A., S. Campanaro, M. D'Angelo, et al. 2005. Life at depth: Photobacterium profundum genome sequence and expression analysis. Science 307: 1459-1461. (Pubitemid 40321941)
12. Campanaro, S., A. Vezzi, N. Vitulo, et al. 2005. Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains. BMC Genomics 6: 122-136. (Pubitemid 41372418)
13. Welch, TJ., A. Farewell, FC Neidhardt 8c D.H. Bartlett. 1993. Stress response of Escherichia coli to elevated hydrostatic pressure. J. Bacteriol. 175: 7170-7177.
14. Smith, G.R. 1990. RecBCD enzyme. In Nucleic Acids and Molecular Biology. R Eckstein 8c D.M.J. Lilley, Eds.: 78-98. Springer-Verlag. Berlin.
15. Taylor, A.F. 8c G.R. Smith. 2003. RecBCD enzyme is a DNA helicase with fast and slow motors of opposite polarity. Nature 423: 889-893.
16. Egan, E.S. 8c M.K. Waldor. 2003. Distinct replication requirements for the two Vibrio cholerae chromosomes. Cell 114: 521-530.
17. Ishida, T., N. Akimitsu, T. Kashioka, et al. 2004. DiaA, a novel DnaA-binding protein, ensures the timely initiation of Escherichia coli chromosome replication. J. Biol. Chem. 279:45546-45555. (Pubitemid 39491541)
18. Keyamura, K., N. Fujikawa, T. Ishida, et al. 2007. The interaction of DiaA and DnaA regulates the replication cycle in E. coli by directly promoting ATP DnaA-specific initiation complexes. Genes Dev. 21: 2083-2099. (Pubitemid 47267293)
19. Duigou, S., K.G. Knudsen, O. Skovgaard, et al. 2006. Independent control of replication initiation of the two Vibrio cholerae chromosomes by DnaA and RctB. J. Bacteriol. 188: 6419-6424. (Pubitemid 44448586)
20. Nievera, C., J.J. Torgue, J.E. Grimwade 8c A.C. Leonard. 2006. SeqA blocking of DnaA- oriC interactions ensures staged assembly of the E co/tpre-RC Mol. Cell. 24:581592.
21. Luijsterburg, M.S., M.C. Noom, G.J. Wuite &R.T. Dame. 2006. The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: a molecular perspective. J. Struct. Biol. 156:262-272.
22. Hommais, F., E. Krin, C Laurent-Winter, et al. 2001. Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS. Mol Microbiol. 40:20-36. (Pubitemid 32322859)
23. Hayden, J.D. 8c S.E. Ades. 2008. The extracytoplasmic stress factor, sigmaE, is required to maintain cell envelope integrity in Escherichia coli. PLoS ONE 3: el573-el585.
24. Wollmann, P. 8c K. Zeth. 2007. The structure of RseB: a sensor in periplasmic stress response of £ coli. J. Mol Biol. 372: 927-941.
25. Allen, E.E. 8c D.H. Bartlett. 2002. Structure and regulation of the omega-3 polyunsaturated fatty acid synthase genes from the deep-sea bacterium Photobacterium profundum strain SS9. Microbiology 148:1903-1913.
26. Raetz, C.R.H. & C Whitfield. 2002. Lipopolysaccharide endotoxins. Ann. Rev. Biochem. 71: 635-700.
27. Rahn, A., K. Beis, J.H. Naismith 8c C Whitfield. 2003. A novel outer membrane protein, Wzi, is involved in surface assembly of the Escherichia coli K30 group 1 capsule. J. Bacteriol. 185: 5882-5890.
28. Reen, F.J., S. Almagro-Moreno, D. Ussery 8c E.R Boyd. 2006. The genomic code: inferring Vibrionaceae niche specialization. Nat. Rev. Microbiol. 4: 697-704.
29. Masui, N. 8c C Kato. 1999. New method of screening for pressure-sensitive mutants at high hydrostatic pressure. Biosci. Biotechnol. Biochem. 63:235-237.
30. Messer, W. 2002. The bacterial replication initiator DnaA. DnaA and oriC, the bacterial mode to initiate DNA replication. FEMS Microbiol. Rev. 26: 355-374. (Pubitemid 35284468)