Importance of proteins controlling initiation of DNA replication in the growth of the high-pressure-loving bacterium Photobacterium profundum SS9

Journal of Bacteriology

Volumn 191, Issue 20, 2009, Pages 6383-6393

  El Hajj, Ziad W ^a   Tryfona, Theodora ^a,d   Allcock, David J ^a,b   Hasan, Fariha ^a,e   Lauro, Federico M ^c,f   Sawyer, Lindsay ^a   Bartlett, Douglas H ^c   Ferguson, Gail P ^b  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b UNIVERSITY OF ABERDEEN   (United Kingdom)

^c UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

^d UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^e QUAID I AZAM UNIVERSITY   (Pakistan)

^f UNIVERSITY OF NEW SOUTH WALES   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

REPLICATION INITIATOR PROTEIN DNAA;

ARTICLE; COLD SENSITIVITY; DNA REPLICATION; GENETIC ORGANIZATION; NONHUMAN; PHOTOBACTERIUM PHOSPHOREUM; PRIORITY JOURNAL;

BACTERIAL PROTEINS; COLD TEMPERATURE; DNA REPLICATION; ESCHERICHIA COLI; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; LIPOPOLYSACCHARIDES; MUTATION; PHOTOBACTERIUM; PLASMIDS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; PHOTOBACTERIUM PROFUNDUM;

EID: 70350445583     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00576-09     Document Type: Article

References (26)

1. Allen, E. E., D. Facciotti, and D. H. Bartlett. 1999. Monounsaturated but not polyunsaturated fatty acids are required for growth of the deep-sea bacterium Photobacterium profundum SS9 at high pressure and low temperature. Appl. Environ. Microbiol. 65:1710-1720.
2. Baba, T., T. Ara, M. Hasegawa, Y. Takai, Y. Okumura, M. Baba, K. A. Datsenko, M. Tomita, B. L. Wanner, and H. Mori. 21 February 2006, posting date. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2:2006.0008. doi:10.1038/msb4100050.
3. Bartlett, D. H., G. P. Ferguson, and G. Valle (ed.). 2008. Adaptations of the psychrotolerant piezophile Photobacterium profundum strain SS9, p. 319-337. In C. Michiels, D. H. Bartlett, and A. Aertsen (ed.), High-pressure microbiology. ASM Press Washington, DC.
4. Brooke, J. S., and M. A. Valvano. 1996. Biosynthesis of inner core lipopolysaccharide in enteric bacteria identification and characterization of a conserved phosphoheptose isomerase. J. Biol. Chem. 271:3608-3614.
5. Campanaro, S., A. Vezzi, N. Vitulo, F. M. Lauro, M. D'Angelo, F. Simonato, A. Cestaro, G. Malacrida, G. Bertoloni, G. Valle, and D. H. Bartlett. 2005. Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains. BMC Genomics 6:122.
6. Campbell, G. R. O., L. A. Sharypova, H. Scheidle, K. M. Jones, K. Niehaus, A. Becker, and G. C. Walker. 2003. Striking complexity of lipopolysaccharide defects in a collection of Sinorhizobium meliloti mutants. J. Bacteriol. 185:3853-3862.
7. Chi, E., and D. H. Bartlett. 1993. Use of a reporter gene to follow high-pressure signal transduction in the deep-sea bacterium Photobacterium sp. strain SS9. J. Bacteriol. 175:7533-7540.
8. DeLong, E. F. 1986. Adaptations of deep-sea bacteria to the abyssal environment. Ph.D. dissertation. University of California, San Diego.
9. Ditta, G., T. Schmidhauser, E. Yakobson, P. Lu, X.-W. Liang, D. R. Finlay, D. Guiney, and D. R. Helinski. 1985. Plasmids related to the broad host range vector, pRK290, useful for gene cloning and for monitoring gene expression. Plasmid 13:149-153. (Pubitemid 15110380)
10. Duigou, S., K. G. Knudsen, O. Skovgaard, E. S. Egan, A. Lobner-Olesen, and M. K. Waldor. 2006. Independent control of replication initiation of the two Vibrio cholerae chromosomes by DnaA and RctB. J. Bacteriol. 188:6419-6424.
11. Egan, E. S., and M. K. Waldor. 2003. Distinct replication requirements for the two Vibrio cholerae chromosomes. Cell 114:521-530.
12. Finan, T. M., B. Kunkel, G. F. de Vos, and E. R. Signer. 1986. Second symbiotic megaplasmid in Rhizobium meliloti carrying exopolysaccharide and thiamine synthesis genes. J. Bacteriol. 167:66-72.
13. Hanahan, D. 1983. Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol. 166:557-580.
14. Ishida, T., N. Akimitsu, T. Kashioka, M. Hatano, T. Kubota, Y. Ogata, K. Sekimizu, and T. Katayama. 2004. DiaA, a novel DnaA-binding protein, ensures the timely initiation of Escherichia coli chromosome replication. J. Biol. Chem. 279:45546-45555.
15. Katayama, T. 1994. The mutant DnaAcos protein which overinitiates replication of the Escherichia coli chromosome is inert to negative regulation for initiation. J. Biol. Chem. 269:22075-22079.
16. Kellenberger-Gujer, G., A. J. Podhajska, and L. Caro. 1978. A cold sensitive dnaA mutant of E. coli which overinitiates chromosome replication at low temperature. Mol. Gen. Genet. 162:9-16.
17. Keyamura, K., N. Fujikawa, T. Ishida, S. Ozaki, M. Su'etsugu, K. Fujimitsu, W. Kagawa, S. Yokoyama, H. Kurumizaka, and T. Katayama. 2007. The interaction of DiaA and DnaA regulates the replication cycle in E. coli by directly promoting ATP DnaA-specific initiation complexes. Genes Dev. 21:2083-2099.
18. Lauro, F. M., E. A. Eloe, N. Liverani, G. Bertoloni, and D. H. Bartlett. 2005. Conjugal vectors for cloning, expression, and insertional mutagenesis in gram-negative bacteria. BioTechniques 38:708-712.
19. Lauro, F. M., K. Tran, A. Vezzi, N. Vitulo, G. Valle, and D. H. Bartlett. 2008. Large-scale transposon mutagenesis of Photobacterium profundum SS9 reveals new genetic loci important for growth at low temperature and high pressure. J. Bacteriol. 190:1699-1709.
20. Lu, M., J. L. Campbell, E. Boye, and N. Kleckner. 1994. SeqA: a negative modulator of replication initiation in E. coli. Cell 77:413-426. (Pubitemid 24145202)
21. Masui, N., and C. Kato. 1999. New method of screening for pressure-sensitive mutants at high hydrostatic pressure. Biosci. Biotechnol. Biochem. 63:235-237.
22. Newman, J. R., and C. Fuqua. 1999. Broad-host-range expression vectors that carry the -L-arabinose-inducible Escherichia coli araBAD promoter and the araC regulator. Gene 227:197-203.
23. Raetz, C. R. H., and C. Whitfield. 2002. Lipopolysaccharide endotoxins. Annu. Rev. Biochem. 71:635-700.
24. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1982. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
25. Stevenson, G., B. Neal, D. Liu, M. Hobbs, N. H. Packer, M. Batley, J. W. Redmond, L. Lindquist, and P. Reeves. 1994. Structure of the O antigen of Escherichia coli K-12 and the sequence of its rfb gene cluster. J. Bacteriol. 176:4144-4156. (Pubitemid 24191300)
26. Vezzi, A., S. Campanaro, M. D'Angelo, F. Simonato, N. Vitulo, F. M. Lauro, A. Cestaro, G. Malacrida, B. Simionati, N. Cannata, C. Romualdi, D. H. Bartlett, and G. Valle. 2005. Life at depth: Photobacterium profundum genome sequence and expression analysis. Science 307:1459-1461.