A simple quantitative model of macromolecular crowding effects on protein folding: Application to the murine prion protein(121-231)

Chemical Physics Letters

Volumn 574, Issue , 2013, Pages 112-115

  Bergasa Caceres, Fernando ^a   Rabitz, Herschel A ^a  

^a PRINCETON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIFFERENTIAL EFFECT; FOLDING DYNAMICS; MACROMOLECULAR CROWDING; MACROMOLECULAR CROWDING EFFECTS; PROTEIN FOLDING KINETICS; PROTEIN FOLDING RATES; PROTEIN TOPOLOGY; QUANTITATIVE MODELS;

PROTEIN FOLDING; PROTEINS; TOPOLOGY;

MACROMOLECULES;

EID: 84878595500     PISSN: 00092614     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cplett.2013.04.056     Document Type: Article

References (47)

1. L. Huang FASEB J. 9 2010 3536
2. Z. Zhou J. Biol. Chem. 284 44 2009 30148
3. S. Ghaemmaghami, and T.G. Oas Nat. Struct. Biol. 8 2001 879
4. A.P. Minton Biopolymers 20 1981 2093
5. A.P. Minton Curr. Opin. Biotechnol. 8 1997 65
6. A.P. Minton Biophys. J. 78 2000 101
7. Y. Qu, and D.W. Bolen Biophys. Chem. 101-102 2002 155
8. N. Tokuriri, M. Kinjo, S. Negi, M. Hoshino, Y. Goto, I. Urabe, and T. Yomo Prot. Sci. 13 2004 125
9. B. Van den Berg, R. Wain, C.M. Dobson, and R.J. Ellis EMBO J. 19 15 2000 3870
10. D.D.L. Minh, C-e. Chang, J. Tryslka, V. Tozzini, and J.A. McCammon J. Am. Chem. Soc. 128 2006 6006
11. M. Bokvist, and G. Gröbner J. Am. Chem. Soc. 129 2007 14848
12. X. Ai, Z. Zhou, and Y. Bai J. Am. Chem. Soc. 128 12 2006 3916
13. W.D. Van Horn, M.E. Ogilvie, and P.F. Flynn J. Am. Chem. Soc. 131 2009 8030
14. L. Stagg, A. Christiansen, and P. Wittung-Stafshede J. Am. Chem. Soc. 133 2010 646
15. L.A. Munishkina, E.M. Cooper, V.N. Uversky, and A.L. Fink J. Mol. Recognit. 17 2004 456
16. J.R. Ellis, and A.P. Minton Biol. Chem. 387 2006 485
17. J. Mittal, and R.B. Best Biophys. J. 98 2010 315
18. V.N. Uversky, E.M. Cooper, K.S. Bower, J. Li, and A.L. Fink FEBS Lett. 515 2002 99
19. M.D. Shtilerman, T.T. Ding, and P.T. Lansbury Jr. Biochemistry 41 2002 3855
20. J.C. Lee, B.T. Lai, J.J. Kozak, H.B. Gray, and J.R. Winkler J. Phys. Chem. B 111 2007 2107
21. F. Bergasa-Caceres, and H.A. Rabitz Chem. Phys. Lett. 376 2003 612
22. F. Bergasa-Caceres, and H.A. Rabitz J. Phys. Chem. B 107 2003 12874
23. G. Wildegger, and R. Glockshuber Nat. Struct. Biol. 6 1999 550
24. K.W. Plaxco, C. Lawrence, Personal communication of internal computational results.
25. A.C. Apetri, K. Maki, H. Roder, and W.K. Surewicz J. Am. Chem. Soc. 128 2006 11673
26. S.M. Martins, A. Chapeaurouge, and S.T. Ferreira J. Biol. Chem. 278 2003 50449
27. K.W. Plaxco, K.T. Simons, I. Ruczinski, and D. Baker Biochemistry 39 37 2000 11177
28. D. Baker, at http://depts.washington.edu/bakerpg/.
29. Y.W. Yang, and M. Gruebele Nature 423 2003 193
30. D.P. Goldenberg J. Mol. Biol. 326 2003 1615
31. J.R. Ellis Curr. Opin. Struct. Biol. 11 2001 114
32. Z. Huang, J.-M. Gabriel, M.A. Baldwin, R.J. Fletterick, S.B. Prusiner, and F.E. Cohen Proc. Natl. Acad. Sci. USA 91 1994 7139
33. T.L. James Proc. Natl. Acad. Sci. USA 94 1997 10086
34. K.J. Knaus, M. Morillas, W. Swietnicki, M. Malone, W.K. Surewicz, and V.C. Yee Nat. Struct. Biol. 8 2001 770
35. I. Melhorn Biochemistry 35 1996 5528
36. K. Kaneko J. Mol. Biol. 270 1997 574
37. F. Bergasa-Caceres, and H.A. Rabitz J. Phys. Chem. B 114 2010 6978
38. S.B. Prusiner Prion Biology and Diseases 2004 Cold Spring Harbor Press p. 244
39. R. Engel, A.H. Westphal, D.H.E.W. Huberts, S.M. Nabuurs, S. Lindhoud, A.J.W.G. Visser, and C.P.M. Van Mierlo J. Biol. Chem. 41 2008 27383
40. T. Scheibel, and S. Lindquist Nat. Struct. Biol. 8 2001 958
41. M. Sekijima, C. Motono, S. Yamasaki, K. Kaneko, and Y. Akiyama Biophys. J. 85 2 2003 1176
42. A. Barducci, R. Chelli, P. Procacci, and V. Schettino Biophys. J. 88 2005 1334
43. A. Barducci, R. Chelli, P. Procacci, V. Schettino, F.L. Gervasio, and M. Parrinello J. Am. Chem. Soc. 128 2006 2705
44. J.W. Kelly Proc. Natl. Acad. Sci. USA 95 1998 930
45. D.O.V. Alonso, S.J. DeArmond, F.E. Cohen, and V. Daggett Proc. Natl. Acad. Sci. USA 98 6 2001 2985
46. L. Nielsen, R. Khurana, A. Coats, S. Frokjaer, J. Brange, S. Vyas, V.N. Uversky, and A.L. Fink Biochemistry 40 2001 6036
47. D. Hamada, and C.M. Dobson Prot. Sci. 11 2002 2417